| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Takeshi Arikuma, Sumi Yoshikawa, Ryuzo Azuma, Kentaro Watanabe, Kazumi Matsumura, Akihiko Konagaya |
Drug interaction prediction using ontology-driven hypothetical assertion framework for pathway generation followed by numerical simulation.  |
BMC Bioinformatics  |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Chun-Hsi Huang, Akihiko Konagaya, Vincenzo Lanza, Peter M. A. Sloot |
Guest Editorial Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid. |
IEEE Transactions on Information Technology in Biomedicine |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Shingo Masuno, Tsutomu Maruyama, Yoshiki Yamaguchi, Akihiko Konagaya |
Multiple Sequence Alignment Based on Dynamic Programming Using FPGA. |
IEICE Transactions |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Yoshiki Yamaguchi, Tsutomu Maruyama, Ryuzo Azuma, Moritoshi Yasunaga, Akihiko Konagaya |
Mesoscopic-level Simulation of Dynamics and Interactions of Biological Molecules Using Monte Carlo Simulation. |
VLSI Signal Processing |
2007 |
DBLP DOI BibTeX RDF |
signal transduction pathways, FPGA, Monte Carlo simulation |
| 1 | Akihiko Konagaya, Richard O. Sinnott, Peter W. Arzberger |
Life Science Grid. |
New Generation Comput. |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Ryuzo Azuma, Ryo Umetsu, Shingo Ohki, Fumikazu Konishi, Sumi Yoshikawa, Akihiko Konagaya, Kazumi Matsumura |
Discovering Dynamic Characteristics of Biochemical Pathways using Geometric Patterns among Parameter-Parameter Dependencies in Differential Equations. |
New Generation Comput. |
2007 |
DBLP DOI BibTeX RDF |
Pharmacokinetics, Simulation, Visualization, Grid Computing, Mathematical Models |
| 1 | Yoshiki Yamaguchi, Tsutomu Maruyama, Fumikazu Konishi, Akihiko Konagaya |
High speed tablation system using an FPGA designed for distribution tables of frequent DNA subsequences. |
FPL |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Shingo Masuno, Tsutomu Maruyama, Yoshiki Yamaguchi, Akihiko Konagaya |
An FPGA Implementation of Multiple Sequence Alignment Based on Carrillo-Lipman Method. |
FPL |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Fumikazu Konishi, Manabu Ishii, Shingo Ohki, Ryo Umetsu, Akihiko Konagaya |
RABC: A Conceptual Design of Pervasive Infrastructure for Browser Computing based on Ajax technologies. |
CCGRID |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Hiroshi Kobayashi, Ryuzo Azuma, Akihiko Konagaya |
Kinetic Analysis of Ligand-Receptor Complex Formation with the Aid of Computer Simulation. |
AINA Workshops |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Takeshi Arikuma, Sumi Yoshikawa, Kentaro Watanabe, Akihiko Konagaya |
Ontology-Driven Hypothetic Assertion (OHA) for Drug Interaction Prediction. |
IMSCCS |
2007 |
DBLP DOI BibTeX RDF |
Drug Interaction, Pharmacokinetics, Web Ontology Language (OWL), Biomedical Ontology, Metabolic Pathway |
| 1 | Ryuzo Azuma, Tetsuji Kitagawa, Hiroshi Kobayashi, Akihiko Konagaya |
Particle simulation approach for subcellular dynamics and interactions of biological molecules. |
BMC Bioinformatics |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Akihiko Konagaya |
Trends in life science grid: from computing grid to knowledge grid. |
BMC Bioinformatics |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Shigeru Takasaki, Yoshihiro Kawamura, Akihiko Konagaya |
Selecting effective siRNA sequences by using radial basis function network and decision tree learning. |
BMC Bioinformatics |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Shigeru Takasaki, Yoshihiro Kawamura, Akihiko Konagaya |
Selecting effective siRNA sequences based on the self-organizing map and statistical techniques. |
Computational Biology and Chemistry |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Craig A. Stewart, Michael Schroeder, Concettina Guerra, Akihiko Konagaya |
Topic 17: High-Performance Bioinformatics. |
Euro-Par |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Fumikazu Konishi, Manabu Ishii, Shingo Ohki, Yusuke Hamano, Shuichi Fukuda, Akihiko Konagaya |
Improving the Research Environment of High Performance Computing for Non-cluster Experts Based on Knoppix Instant Computing Technology. |
Euro-Par |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Shingo Masuno, Tsutomu Maruyama, Yoshiki Yamaguchi, Akihiko Konagaya |
Multidimensional Dynamic Programming for Homology Search on Distributed Systems. |
Euro-Par |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Akihiko Konagaya |
OBIGrid: Towards the 'Ba' for Sharing Resources, Services and Knowledge for Bioinformatics. |
CCGRID |
2006 |
DBLP DOI BibTeX RDF |
Ontology I, Web Services, Grid Computing, Workflow, Bioinformatics |
| 1 | Ryuzo Azuma, Tetsuji Kitagawa, Hiroshi Kobayashi, Akihiko Konagaya |
Particle Simulation Approach for Sub-cellular Dynamics and Interactions of Biological Molecules. |
IMSCCS |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Mitsuhiro Okada, Yutaro Sugimoto, Sumi Yoshikawa, Akihiko Konagaya |
Drug Interaction Ontology (DIO) and the Resource-Sensitive Logical Inferences. |
Essays Dedicated to Joseph A. Goguen |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Shuhei Kimura, Kaori Ide, Aiko Kashihara, Makoto Kano, Mariko Hatakeyama, Ryoji Masui, Noriko Nakagawa, Shigeyuki Yokoyama, Seiki Kuramitsu, Akihiko Konagaya |
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. |
Bioinformatics |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Eli Kaminuma, Naohiko Heida, Yuko Tsumoto, Miki Nakazawa, Nobuharu Goto, Akihiko Konagaya, Minami Matsui, Tetsuro Toyoda |
Three-dimensional Definition of Leaf Morphological Traits of arabidopsis in Silico Phenotypic Analysis. |
J. Bioinformatics and Computational Biology |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Tetsuya Sakurai, Masakazu Satou, Kenji Akiyama, Kei Iida, Motoaki Seki, Takashi Kuromori, Takuya Ito, Akihiko Konagaya, Tetsuro Toyoda, Kazuo Shinozaki |
RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome. |
Nucleic Acids Research |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Shingo Masuno, Tsutomu Maruyama, Yoshiki Yamaguchi, Akihiko Konagaya |
Multidimensional Dynamic Programming for Homology Search. |
FPL |
2005 |
DBLP BibTeX RDF |
|
| 1 | Yoshiki Yamaguchi, Tsutomu Maruyama, Ryuzo Azuma, Akihiko Konagaya |
Spatiotemporal Simulation of a Single Living Cell. |
FPT |
2005 |
DBLP BibTeX RDF |
|
| 1 | Aki Hasegawa, Kazumi Kuriyama-Matsumura, Xiaomei Yu, Mariko Hatakeyama, Akihiko Konagaya |
Software-Aided Mass Spectrometry Analysis for Identification of Protein-Protein Interaction in Signal Transduction Pathways. |
ICDE Workshops |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Akihiko Konagaya, Kenji Satou (eds.) |
Grid Computing in Life Science, First International Workshop on Life Science Grid, LSGRID 2004, Kanazawa, Japan, May 31 - June 1, 2004, Revised Selected andInvited Papers |
LSGRID |
2005 |
DBLP BibTeX RDF |
|
| 1 | Tetsuo Shibuya, Hisashi Kashima, Akihiko Konagaya |
Efficient filtering methods for clustering cDNAs with spliced sequence alignment. |
Bioinformatics |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Shuhei Kimura, Takuji Kawasaki, Mariko Hatakeyama, Takashi Naka, Fumikazu Konishi, Akihiko Konagaya |
OBIYagns: a grid-based biochemical simulator with a parameter estimator. |
Bioinformatics |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Kaoru Yamamoto, Taku Kudo, Akihiko Konagaya, Yuji Matsumoto |
Use of morphological analysis in protein name recognition. |
Journal of Biomedical Informatics |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Takeshi Nagashima, Hideo Matsuda, Diego G. Silva, Nikolai Petrovsky, Akihiko Konagaya, Christian Schönbach |
FREP: a database of functional repeats in mouse cDNAs. |
Nucleic Acids Research |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Akihiko Konagaya, Fumikazu Konishi, Mariko Hatakeyama, Kenji Satou |
The Superstructure toward Open Bioinformatics Grid. |
New Generation Comput. |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Peter W. Arzberger, Abbas Farazdel, Akihiko Konagaya, Larry Ang, Shinji Shimojo, Rick L. Stevens |
Life Sciences and Cyberinfrastructure: Dual and Interacting Revolutions that will Drive Future Science. |
New Generation Comput. |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Yoshiki Yamaguchi, Tsutomu Maruyama, Akihiko Konagaya |
Three-Dimensional Dynamic Programming for Homology Search. |
FPL |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Akinobu Fukuzaki, Takeshi Nagashima, Kaori Ide, Fumikazu Konishi, Mariko Hatakeyama, Shigeyuki Yokoyama, Seiki Kuramitsu, Akihiko Konagaya |
Genome-Wide Functional Annotation Environment forin OBIGrid. |
LSGRID |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Fumikazu Konishi, Akihiko Konagaya |
The Architectural Design of High-Throughput BLAST Services on OBIGrid. |
LSGRID |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Kenji Satou, Yasuhiko Nakashima, Shin'ichi Tsuji, Xavier Défago, Akihiko Konagaya |
An Integrated System for Distributed Bioinformatics Environment on Grids. |
LSGRID |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Naohiko Heida, Yoshikazu Hasegawa, Yoshiki Mochizuki, Katsura Hirosawa, Akihiko Konagaya, Tetsuro Toyoda |
TraitMap: an XML-based genetic-map database combining multigenic loci and biomolecular networks. |
ISMB/ECCB (Supplement of Bioinformatics) |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Shouji Tatsumoto, Kenji Satou, Akihiko Konagaya |
Prediction of Protein Secondary Structure from PDB Structure Information Based on Sequence Segments Homology Searching. |
METMBS |
2004 |
DBLP BibTeX RDF |
|
| 1 | Tetsuro Toyoda, Yoshiki Mochizuki, Akihiko Konagaya |
GSCope: a clipped fisheye viewer effective for highly complicated biomolecular network graphs. |
Bioinformatics |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Tetsuro Toyoda, Akihiko Konagaya |
KnowledgeEditor: a new tool for interactive modeling and analyzing biological pathways based on microarray data. |
Bioinformatics |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Makoto Taiji, Tetsu Narumi, Yousuke Ohno, Noriyuki Futatsugi, Atsushi Suenaga, Naoki Takada, Akihiko Konagaya |
Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. |
SC |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Junko Hosaka, Judice L. Y. Koh, Akihiko Konagaya |
Effect of utilizing terminology on extraction of protein-protein interaction information from biomedical literature. |
EACL |
2003 |
DBLP BibTeX RDF |
|
| 1 | Shuhei Kimura, Mariko Hatakeyama, Akihiko Konagaya |
Inference of S-system models of genetic networks using a genetic local search. |
IEEE Congress on Evolutionary Computation |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Makoto Taiji, Tetsu Narumi, Yousuke Ohno, Akihiko Konagaya |
MDGRAPE-3: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. |
PARCO |
2003 |
DBLP BibTeX RDF |
|
| 1 | Shouji Tatsumoto, Kenji Satou, Akihiko Konagaya, Jun'ichi Kurita, Hideto Shimahara, Shin-ichi Tate |
Development of Support Tool for NMR Spectrum Analysis. |
METMBS |
2003 |
DBLP BibTeX RDF |
|
| 1 | Yohei Minakuchi, Kenji Satou, Akihiko Konagaya |
Prediction of Protein-Protein Interaction Sites Using Support Vector Machines. |
METMBS |
2003 |
DBLP BibTeX RDF |
|
| 1 | Sumi Yoshikawa, Akihiko Konagaya |
DIO: Drug Interaction Ontology - Application to Inferences in Possible Drug-Drug Interactions. |
METMBS |
2003 |
DBLP BibTeX RDF |
|
| 1 | Yoshiki Yamaguchi, Yosuke Miyajima, Tsutomu Maruyama, Akihiko Konagaya |
High Speed Homology Search Using Run-Time Reconfiguration. |
FPL |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Yoshiki Yamaguchi, Tsutomu Maruyama, Akihiko Konagaya |
High Speed Homology Search with FPGAs. |
Pacific Symposium on Biocomputing |
2002 |
DBLP BibTeX RDF |
|
| 1 | Akihiko Konagaya |
OBIGrid: Towards a New Distributed Platform for Bioinformatics. |
SRDS |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Xavier Défago, Akihiko Konagaya |
Circle formation for oblivious anonymous mobile robots with no common sense of orientation. |
POMC |
2002 |
DBLP DOI BibTeX RDF |
anonymous computations, circle formation, cooperative mobile robotics, geometric pattern formation, oblivious computations, distributed algorithms, computational geometry, self-stabilization |
| 1 | Minoru Asogawa, Yukiko Fujiwara, Akihiko Konagaya |
A combination of a functional motif model and a structural motif model for a database validation. |
HICSS |
1995 |
DBLP DOI BibTeX RDF |
functional motif model, structural motif model, database validation, leucine zipper motif, twisted alpha helix sequences, DNA binding site, alpha helix region, Swiss Protein database, helical structures, PDB database, neural network, hidden Markov models, HMM, hidden Markov model, database management systems, neural nets, DNA, genetics, biology computing, subsequence |
| 1 | Yukiko Fujiwara, Minoru Asogawa, Akihiko Konagaya |
Stochastic Motif Extraction Using Hidden Markov Model. |
ISMB |
1994 |
DBLP BibTeX RDF |
|
| 1 | Tsutomu Maruyama, Tetsuya Hirose, Akihiko Konagaya |
A Fine-Grained Parallel Genetic Algorithm for Distributed Parallel Systems. |
ICGA |
1993 |
DBLP BibTeX RDF |
|
| 1 | Hidetoshi Tanaka, Masato Ishikawa, Kiyoshi Asai, Akihiko Konagaya |
Hidden Markov Models and Iterative Aligners: Study of Their Equivalence and Possibilities. |
ISMB |
1993 |
DBLP BibTeX RDF |
|
| 1 | Tsutomu Maruyama, Akihiko Konagaya, Koichi Konishi |
An Asynchronous Fine-Grained Parallel Genetic Algorithm. |
PPSN |
1992 |
DBLP BibTeX RDF |
|
| 1 | Koichi Konishi, Tsutomu Maruyama, Akihiko Konagaya, Kaoru Yoshida, Takashi Chikayama |
Implementing Streams on Parallel Machines with Distributed Memory. |
FGCS |
1992 |
DBLP BibTeX RDF |
|
| 1 | Akihiko Konagaya |
A Stochastic Approach to Genetic Information Processing. |
ALT |
1992 |
DBLP DOI BibTeX RDF |
|
| 1 | Kenji Yamanishi, Akihiko Konagaya |
Learning Stochastic Motifs from Genetic Sequences. |
ML |
1991 |
DBLP BibTeX RDF |
|
| 1 | Atsushi Atarashi, Akihiko Konagaya, Shinichi Habata, Minoru Yokota |
Implementation and Evaluation of Dynamic Predicates on the Sequential Inference Machine CHI. |
ICCL |
1990 |
DBLP BibTeX RDF |
|
| 1 | Akihiko Konagaya, Shinichi Habata, Atsushi Atarashi, Minoru Yokota |
Performance Evaluation of a Sequential Inference Machine CHI. |
NACLP |
1989 |
DBLP BibTeX RDF |
|
| 1 | Hidenori Itoh, Hidetoshi Monoi, Shigeki Shibayama, Nobuyoshi Miyazaki, Haruo Yokota, Akihiko Konagaya |
Knowledge Base System in Logic Programming Paradigm. |
FGCS |
1988 |
DBLP BibTeX RDF |
|
| 1 | Akihiko Konagaya, Ryosei Nakazaki, Mamoru Umemura |
A Co-Operative Programming Environment for a Back-End Type Sequential Inference Machine CHI. |
Parallel Algorithms and Architectures |
1987 |
DBLP DOI BibTeX RDF |
|
| 1 | Ryosei Nakazaki, Akihiko Konagaya, Shinichi Habata, Hideo Shimazu, Mamoru Umemura, Masahiro Yamamoto, Minoru Yokota, Takashi Chikayama |
Design of a High-speed Prolog Machine (HPM). |
ISCA |
1985 |
DBLP DOI BibTeX RDF |
|
| 1 | Akihiko Konagaya, Mamoru Umemura |
Knowledge Information Processing Language: ShapeUp. |
New Generation Comput. |
1984 |
DBLP DOI BibTeX RDF |
|
| 1 | Tetsuo Ida, Akihiko Konagaya |
Comparison of Closure Reduction and Combinatory Reduction Schemes. |
RIMS Symposia on Software Science and Engineering |
1984 |
DBLP DOI BibTeX RDF |
|
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