Search results for "Alexandros Stamatakis"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Robert K. Luecking, Brendan P. Hodkinson, Alexandros Stamatakis, Reed A. Cartwright	PICS-Ord: Unlimited Coding of Ambiguous Regions by Pairwise Identity and Cost Scores Ordination.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Simon A. Berger, Alexandros Stamatakis	Aligning short reads to reference alignments and trees.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Nikolaos Alachiotis, Alexandros Stamatakis	A Vector-Like Reconfigurable Floating-Point Unit for the Logarithm.	Int. J. Reconfig. Comp.	2011	DBLP DOI BibTeX RDF
1	Nicholas D. Pattengale, Andre J. Aberer, Krister M. Swenson, Alexandros Stamatakis, Bernard M. E. Moret	Uncovering Hidden Phylogenetic Consensus in Large Data Sets.	IEEE/ACM Trans. Comput. Biology Bioinform.	2011	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Fernando Izquierdo-Carrasco	Result verification, code verification and computation of support values in phylogenetics.	Briefings in Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis	Phylogenetics.	Encyclopedia of Parallel Computing	2011	DBLP DOI BibTeX RDF
1	Madeleine Seeland, Simon A. Berger, Alexandros Stamatakis, Stefan Kramer	Parallel Structural Graph Clustering.	ECML/PKDD	2011	DBLP DOI BibTeX RDF
1	Nikolaos Alachiotis, Alexandros Stamatakis	FPGA Acceleration of the Phylogenetic Parsimony Kernel?	FPL	2011	DBLP DOI BibTeX RDF	FPGA, performance analysis, SIMD, parsimony
1	Fernando Izquierdo-Carrasco, Alexandros Stamatakis	Computing the Phylogenetic Likelihood Function Out-of-Core.	IPDPS Workshops	2011	DBLP DOI BibTeX RDF
1	Nikolaos Alachiotis, Simon A. Berger, Alexandros Stamatakis	Accelerating Phylogeny-Aware Short DNA Read Alignment with FPGAs.	FCCM	2011	DBLP DOI BibTeX RDF
1	Andre J. Aberer, Alexandros Stamatakis	A Simple and Accurate Method for Rogue Taxon Identification.	BIBM	2011	DBLP DOI BibTeX RDF
1	Nikolaos Alachiotis, Alexandros Stamatakis	FPGA Optimizations for a Pipelined Floating-Point Exponential Unit.	ARC	2011	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Nikolaos Alachiotis	Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data.	Bioinformatics [ISMB]	2010	DBLP DOI BibTeX RDF
1	Andre J. Aberer, Nicholas D. Pattengale, Alexandros Stamatakis	Parallel computation of phylogenetic consensus trees.	Procedia CS	2010	DBLP DOI BibTeX RDF
1	Andre J. Aberer, Nicholas D. Pattengale, Alexandros Stamatakis	Parallelized phylogenetic post-analysis on multi-core architectures.	J. Comput. Science	2010	DBLP DOI BibTeX RDF
1	Nikolaos Alachiotis, Alexandros Stamatakis	Efficient floating-point logarithm unit for FPGAs.	IPDPS Workshops	2010	DBLP DOI BibTeX RDF
1	Wayne Pfeiffer, Alexandros Stamatakis	Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code.	IPDPS Workshops	2010	DBLP DOI BibTeX RDF
1	Nikolaos Alachiotis, Simon A. Berger, Alexandros Stamatakis	Efficient PC-FPGA Communication over Gigabit Ethernet.	CIT	2010	DBLP DOI BibTeX RDF	PC-FPGA communication, FPGA, Gigabit Ethernet, UDP/IP
1	Simon A. Berger, Alexandros Stamatakis	Accuracy of morphology-based phylogenetic fossil placement under Maximum Likelihood.	AICCSA	2010	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Zsolt Komornik, Simon A. Berger	Evolutionary placement of short sequence reads on multi-core architectures.	AICCSA	2010	DBLP DOI BibTeX RDF
1	Heinz Stockinger, Alexander F. Auch, Markus Göker, Jan P. Meier-Kolthoff, Alexandros Stamatakis	Large-Scale Co-Phylogenetic Analysis on the Grid.	IJGHPC	2009	DBLP BibTeX RDF
1	Simon A. Berger, Alexandros Stamatakis	Accuracy and Performance of Single versus Double Precision Arithmetics for Maximum Likelihood Phylogeny Reconstruction.	PPAM	2009	DBLP DOI BibTeX RDF
1	Nikolaos Alachiotis, Alexandros Stamatakis, Euripides Sotiriades, Apostolos Dollas	A reconfigurable architecture for the Phylogenetic Likelihood Function.	FPL	2009	DBLP DOI BibTeX RDF
1	Nikolaos Alachiotis, Euripides Sotiriades, Apostolos Dollas, Alexandros Stamatakis	Exploring FPGAs for accelerating the phylogenetic likelihood function.	IPDPS	2009	DBLP DOI BibTeX RDF
1	Frederico Pratas, Pedro Trancoso, Alexandros Stamatakis, Leonel Sousa	Fine-grain Parallelism Using Multi-core, Cell/BE, and GPU Systems: Accelerating the Phylogenetic Likelihood Function.	ICPP	2009	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Michael Ott	Load Balance in the Phylogenetic Likelihood Kernel.	ICPP	2009	DBLP DOI BibTeX RDF
1	Nicholas D. Pattengale, Masoud Alipour, Olaf R. P. Bininda-Emonds, Bernard M. E. Moret, Alexandros Stamatakis	How Many Bootstrap Replicates Are Necessary?	RECOMB	2009	DBLP DOI BibTeX RDF	Support Value, Bootstopping, Bootstrap, Maximum Likelihood, Stopping Criterion, Phylogenetic Inference
1	Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew D. Johnson, Daniel Janies, Alexandros Stamatakis	Large-scale phylogenetic analysis on current HPC architectures.	Scientific Programming	2008	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Michael Ott	Exploiting Fine-Grained Parallelism in the Phylogenetic Likelihood Function with MPI, Pthreads, and OpenMP: A Performance Study.	PRIB	2008	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Alexander F. Auch, Jan P. Meier-Kolthoff, Markus Göker	AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Filip Blagojevic, Dimitrios S. Nikolopoulos, Alexandros Stamatakis, Christos D. Antonopoulos, Matthew Curtis-Maury	Runtime scheduling of dynamic parallelism on accelerator-based multi-core systems.	Parallel Computing	2007	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Filip Blagojevic, Dimitrios S. Nikolopoulos, Christos D. Antonopoulos	Exploring New Search Algorithms and Hardware for Phylogenetics: RAxML Meets the IBM Cell.	VLSI Signal Processing	2007	DBLP DOI BibTeX RDF	RAxML, IBM cell, maximum likelihood, phylogenetic inference
1	Michael Ott, Jaroslaw Zola, Alexandros Stamatakis, Srinivas Aluru	Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L.	SC	2007	DBLP DOI BibTeX RDF	IBM BlueGene/L, RAxML, maximum likelihood, phylogenetic inference
1	Filip Blagojevic, Alexandros Stamatakis, Christos D. Antonopoulos, Dimitrios S. Nikolopoulos	RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine.	IPDPS	2007	DBLP DOI BibTeX RDF
1	Filip Blagojevic, Dimitrios S. Nikolopoulos, Alexandros Stamatakis, Christos D. Antonopoulos	Dynamic multigrain parallelization on the cell broadband engine.	PPOPP	2007	DBLP DOI BibTeX RDF	IBM-cell programming models, RAxML, process scheduling
1	Alexandros Stamatakis	RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	David A. Bader, Usman Roshan, Alexandros Stamatakis	Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions.	Advances in Computers	2006	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis	Phylogenetic models of rate heterogeneity: a high performance computing perspective.	IPDPS	2006	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier	RAxML-II: a program for sequential, parallel and distributed inference of large phylogenetic trees.	Concurrency and Computation: Practice and Experience	2005	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier	RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Markus Lindermeier, Michael Ott, Thomas Ludwig 0002, Harald Meier	DRAxML at home: a distributed program for computation of large phylogenetic trees.	Future Generation Comp. Syst.	2005	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis	An Efficient Program for Phylogenetic Inference Using Simulated Annealing.	IPDPS	2005	DBLP DOI BibTeX RDF
1	Adam Arvelakis, Martin Reczko, Alexandros Stamatakis, Alkiviadis Symeonidis, Ioannis G. Tollis	Using Treemaps to Visualize Phylogenetic Trees.	ISBMDA	2005	DBLP DOI BibTeX RDF
1	Z. Du, Alexandros Stamatakis, F. Lin, Usman Roshan, Luay Nakhleh	Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood.	HPCC	2005	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Michael Ott, Thomas Ludwig 0002	RAxML-OMP: An Efficient Program for Phylogenetic Inference on SMPs.	PaCT	2005	DBLP DOI BibTeX RDF
1	Maria Charalambous, Pedro Trancoso, Alexandros Stamatakis	Initial Experiences Porting a Bioinformatics Application to a Graphics Processor.	Panhellenic Conference on Informatics	2005	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis	Distributed and parallel algorithms and systems for inference of huge phylogenetic trees based on the maximum likelihood method.		2004	RDF
1	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier	The AxML program family for maximum likelihood-based phylogenetic tree inference.	Concurrency - Practice and Experience	2004	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier	Parallel Inference of a 10.000-Taxon Phylogeny with Maximum Likelihood.	Euro-Par	2004	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Harald Meier, Thomas Ludwig 0002	New Fast and Accurate Heuristics for Inference of Large Phylogenetic Trees.	IPDPS	2004	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier	A fast program for maximum likelihood-based inference of large phylogenetic trees.	SAC	2004	DBLP DOI BibTeX RDF	parallel & distributed computing, maximum likelihood, phylogenetic inference
1	Alexandros Stamatakis, Thomas Ludwig 0002	Phylogenetic Tree Inference on PC Architectures with AxML/PAxML.	IPDPS	2003	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Markus Lindermeier, Michael Ott, Thomas Ludwig 0002, Harald Meier	DAxML: A Program for Distributed Computation of Phylogenetic Trees Based on Load Managed CORBA.	PaCT	2003	DBLP DOI BibTeX RDF
1	Günther Rackl, Thomas Ludwig 0002, Markus Lindermeier, Alexandros Stamatakis	Efficiently building on-line tools for distributed heterogeneous environments.	Scientific Programming	2002	DBLP BibTeX RDF
1	Thomas Ludwig 0002, Markus Lindermeier, Alexandros Stamatakis, Günther Rackl	Tool environments in CORBA-based medical high-performance computing.	Future Generation Comp. Syst.	2002	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier, Marty J. Wolf	Accelerating parallel maximum likelihood-based phylogenetic tree calculations using subtree equality vectors.	SC	2002	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier, Marty J. Wolf	AxML: A Fast Program for Sequential and Parallel Phylogenetic Tree Calculations Based on the Maximum Likelihood Method.	CSB	2002	DBLP DOI BibTeX RDF
1	Thomas Ludwig 0002, Markus Lindermeier, Alexandros Stamatakis, Günther Rackl	Tool Environments in CORBA-Based Medical High Performance Computing.	PaCT	2001	DBLP DOI BibTeX RDF

Publications of "Alexandros Stamatakis" ( http://dblp.L3S.de/Authors/Alexandros_Stamatakis )