Search results for "Alfonso Valencia"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Thilo Muth, Juan A. García-Martín, Antonio Rausell, David de Juan, Alfonso Valencia, Florencio Pazos	JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Hanchuan Peng, Alex Bateman, Alfonso Valencia, Jonathan D. Wren	Bioimage informatics: a new category in Bioinformatics.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Iman Hajirasouliha, Alexander Schönhuth, David de Juan, Alfonso Valencia, Süleyman Cenk Sahinalp	Mirroring co-evolving trees in the light of their topologies.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Dorota Herman, David Ochoa, David de Juan, Daniel Lopez, Alfonso Valencia, Florencio Pazos	Selection of organisms for the co-evolution-based study of protein interactions.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Olli-P. Kallioniemi, Lodewyk F. A. Wessels, Alfonso Valencia	On the organization of bioinformatics core services in biology-based research institutes.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Iman Hajirasouliha, Alexander Schönhuth, David de Juan, Alfonso Valencia, Süleyman Cenk Sahinalp	Mirroring co-evolving trees in the light of their topologies	CoRR	2011	DBLP BibTeX RDF
1	Gonzalo López, Paolo Maietta, Jose Manuel Rodriguez, Alfonso Valencia, Michael L. Tress	firestar - advances in the prediction of functionally important residues.	Nucleic Acids Research	2011	DBLP DOI BibTeX RDF
1	Miguel P. Rocha, Juan M. Corchado Rodríguez, Florentino Fdez-Riverola, Alfonso Valencia (eds.)	5th International Conference on Practical Applications of Computational Biology & Bioinformatics, PACBB 2011, April 6-8, 2011, Salamanca, Spain	PACBB	2011	DBLP DOI BibTeX RDF
1	Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Alfonso Valencia	Extending pathways and processes using molecular interaction networks to analyse cancer genome data.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Alfonso Valencia	TopoGSA: network topological gene set analysis.	Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Florian Leitner, Scott A. Mardis, Martin Krallinger, Gianni Cesareni, Lynette Hirschman, Alfonso Valencia	An Overview of BioCreative II.5.	IEEE/ACM Trans. Comput. Biology Bioinform.	2010	DBLP DOI BibTeX RDF
1	José M. Fernández, Robert Hoffmann, Alfonso Valencia	iHOP Web Services Family.	JBI	2010	DBLP DOI BibTeX RDF
1	José M. Fernández, Alfonso Valencia	Bioinformatic Software Developments in Spain.	JBI	2010	DBLP DOI BibTeX RDF
1	Jaume Bacardit, Michael Stout, Jonathan D. Hirst, Alfonso Valencia, Robert Elliott Smith, Natalio Krasnogor	Automated Alphabet Reduction for Protein Datasets.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Martin Krallinger, José M. G. Izarzugaza, Carlos Rodríguez Penagos, Alfonso Valencia	Extraction of human kinase mutations from literature, databases and genotyping studies.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	José M. G. Izarzugaza, Anja Baresic, Lisa E. M. McMillan, Corin Yeats, Andrew B. Clegg, Christine A. Orengo, Andrew C. R. Martin, Alfonso Valencia	An integrated approach to the interpretation of Single Amino Acid Polymorphisms within the framework of CATH and Gene3D.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Eduardo Andrés León, Iakes Ezkurdia, Beatriz García, Alfonso Valencia, David de Juan	EcID. A database for the inference of functional interactions in E. coli.	Nucleic Acids Research	2009	DBLP DOI BibTeX RDF
1	Martin Krallinger, Carlos Rodríguez Penagos, Ashish V. Tendulkar, Alfonso Valencia	PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction.	Nucleic Acids Research	2009	DBLP DOI BibTeX RDF
1	Guillermo Carbajosa, Almudena Trigo, Alfonso Valencia, Ildefonso Cases	Bionemo: molecular information on biodegradation metabolism.	Nucleic Acids Research	2009	DBLP DOI BibTeX RDF
1	Iakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, Michael L. Tress	Progress and challenges in predicting protein-protein interaction sites.	Briefings in Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Johannes Starlinger, Florian Leitner, Alfonso Valencia, Ulf Leser	SOA-Based Integration of Text Mining Services.	SERVICES I	2009	DBLP DOI BibTeX RDF
1	Angela del Pozo, Florencio Pazos, Alfonso Valencia	Defining functional distances over Gene Ontology.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	José M. G. Izarzugaza, David de Juan, Carles Pons, Florencio Pazos, Alfonso Valencia	Enhancing the prediction of protein pairings between interacting families using orthology information.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Michael L. Tress, Jan-Jaap Wesselink, Adam Frankish, Gonzalo López, Nick Goldman, Ari Löytynoja, Tim Massingham, Fabio Pardi, Simon Whelan, Jennifer Harrow, Alfonso Valencia	Determination and validation of principal gene products.	Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Alfonso Valencia	Protein Interactions Extracted from Genomes and Papers.	APBC	2008	DBLP BibTeX RDF
1	Zhang-Zhi Hu, K. Bretonnel Cohen, Lynette Hirschman, Alfonso Valencia, Hongfang Liu, Michelle G. Giglio, Cathy H. Wu	iProLINK: A Framework for Linking Text Mining with Ontology and Systems Biology.	BIBM	2008	DBLP DOI BibTeX RDF
1	Alfonso Valencia, Ildefonso Cases	Editorial.	ISMB	2008	DBLP DOI BibTeX RDF
1	Alfonso Valencia	Text mining in genomics and systems biology.	DTMBIO	2008	DBLP DOI BibTeX RDF	text mining
1	Alfonso Valencia, Alex Bateman	Editorial.	Bioinformatics	2007	DBLP DOI BibTeX RDF
1	José M. Fernández, Robert Hoffmann, Alfonso Valencia	iHOP web services.	Nucleic Acids Research	2007	DBLP DOI BibTeX RDF
1	Gonzalo López, Alfonso Valencia, Michael L. Tress	FireDB - a database of functionally important residues from proteins of known structure.	Nucleic Acids Research	2007	DBLP DOI BibTeX RDF
1	Gonzalo López, Alfonso Valencia, Michael L. Tress	firestar - prediction of functionally important residues using structural templates and alignment reliability.	Nucleic Acids Research	2007	DBLP DOI BibTeX RDF
1	Ildefonso Cases, David G. Pisano, Eduardo Andrés León, Angel Carro, José María Fernández, Gonzalo Gómez-López, Jose Manuel Rodriguez, Jaime F. Vera, Alfonso Valencia, Ana María Rojas	CARGO: a web portal to integrate customized biological information.	Nucleic Acids Research	2007	DBLP DOI BibTeX RDF
1	Michael L. Tress, Domenico Cozzetto, Anna Tramontano, Alfonso Valencia	An analysis of the Sargasso Sea resource and the consequences for database composition.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Alfonso Valencia, Alex Bateman	Software patents in Bioinformatics.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Trey Ideker, Alfonso Valencia	Bioinformatics in the human interactome project.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Udo Hahn, Alfonso Valencia	Semantic Mining in Biomedicine (Introduction to the papers selected from the SMBM 2005 Symposium, Hinxton, U.K., April 2005).	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Alex Bateman, Alfonso Valencia	Structural genomics meets computational biology.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Victor de Lorenzo, Luis Serrano, Alfonso Valencia	Synthetic Biology: challenges ahead.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Florencio Pazos, Antonio Rausell, Alfonso Valencia	Phylogeny-independent detection of functional residues.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	José M. G. Izarzugaza, David de Juan, Carles Pons, Juan A. G. Ranea, Alfonso Valencia, Florencio Pazos	TSEMA: interactive prediction of protein pairings between interacting families.	Nucleic Acids Research	2006	DBLP DOI BibTeX RDF
1	Angel Carro, Michael L. Tress, David de Juan, Florencio Pazos, Pedro Lopez-Romero, Antonio del Sol, Alfonso Valencia, Ana María Rojas	TreeDet: a web server to explore sequence space.	Nucleic Acids Research	2006	DBLP DOI BibTeX RDF
1	Martin Krallinger, Maria Padron, Alfonso Valencia	A sentence sliding window approach to extract protein annotations from biomedical articles.	BMC Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Christian Blaschke, Eduardo Andrés León, Martin Krallinger, Alfonso Valencia	Evaluation of BioCreAtIvE assessment of task 2.	BMC Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Lynette Hirschman, Alexander S. Yeh, Christian Blaschke, Alfonso Valencia	Overview of BioCreAtIvE: critical assessment of information extraction for biology.	BMC Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Alfonso Valencia, Alex Bateman	Increasing the Impact of Bioinformatics.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Christian Blaschke, Alexander S. Yeh, Evelyn Camon, Marc E. Colosimo, Rolf Apweiler, Lynette Hirschman, Alfonso Valencia	Do you do text?	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Alex Bateman, Alfonso Valencia	An update from the Bioinformatics Editors.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Florencio Pazos, David Guijas, Alfonso Valencia, Victor de Lorenzo	MetaRouter: bioinformatics for bioremediation.	Nucleic Acids Research	2005	DBLP DOI BibTeX RDF
1	Osvaldo Graña, Volker A. Eyrich, Florencio Pazos, Burkhard Rost, Alfonso Valencia	EVAcon: a protein contact prediction evaluation service.	Nucleic Acids Research	2005	DBLP DOI BibTeX RDF
1	Robert Hoffmann, Joaquín Dopazo, Juan C. Cigudosa, Alfonso Valencia	HCAD, closing the gap between breakpoints and genes.	Nucleic Acids Research	2005	DBLP DOI BibTeX RDF
1	Manuel Gómez, Ramón Alonso-Allende, Florencio Pazos, Osvaldo Graña, David de Juan, Alfonso Valencia	Accessible Protein Interaction Data for Network Modeling. Structure of the Information and Available Repositories.	T. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
1	David de Juan, Mario Mellado, José Miguel Rodríguez-Frade, Patricia Hernanz-Falcón, Antonio Serrano, Antonio del Sol, Alfonso Valencia, Carlos Martínez-A, Ana María Rojas	A framework for computational and experimental methods: Identifying dimerization residues in CCR chemokine receptors.	ECCB/JBI	2005	DBLP DOI BibTeX RDF
1	Roderic Guigó, Federico Morán, Alfonso Valencia, Josep F. Abril	ECCB/JBI 2005.	ECCB/JBI	2005	DBLP DOI BibTeX RDF
1	Robert Hoffmann, Alfonso Valencia	Implementing the iHOP concept for navigation of biomedical literature.	ECCB/JBI	2005	DBLP DOI BibTeX RDF
1	Luis Sánchez-Pulido, Ana María Rojas, Karel H. M. van Wely, Carlos Martínez-A, Alfonso Valencia	SPOC: A widely distributed domain associated with cancer, apoptosis and transcription.	BMC Bioinformatics	2004	DBLP DOI BibTeX RDF
1	José María Fernández, Alfonso Valencia	YAdumper: extracting and translating large information volumes from relational databases to structured flat files.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Alex Bateman, Alfonso Valencia	New Leadership for Bioinformatics.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Michael L. Tress, Osvaldo Graña, Alfonso Valencia	SQUARE-determining reliable regions in sequence alignments.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Eric W. Brown, William R. Hersh, Alfonso Valencia	SIGIR 2003 workshop on text analysis and search for bioinformatics.	SIGIR Forum	2004	DBLP DOI BibTeX RDF
1	Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler	IntAct: an open source molecular interaction database.	Nucleic Acids Research	2004	DBLP DOI BibTeX RDF
1	José María Fernández, Alfonso Valencia	XML Databases, are Ready for Bioinformatics?	Spanish Bioinformatics Conference	2004	DBLP BibTeX RDF
1	Ana María Rojas, Luis Sánchez-Pulido, Agnes Fütterer, Karel H. M. van Wely, Carlos Martínez-A, Alfonso Valencia	Bioinformatic Analyses of the Dio Family of Proteins.	Spanish Bioinformatics Conference	2004	DBLP BibTeX RDF
1	Florencio Pazos, David Guijas, Manuel J. Gomez, Almudena Trigo, Victor de Lorenzo, Alfonso Valencia	The Biodegradation Network, a New Scenario for Computational Systems Biology Research.	CMSB	2004	DBLP DOI BibTeX RDF
1	Christos A. Ouzounis, Alfonso Valencia	Early bioinformatics: the birth of a discipline - a personal view.	Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Alfonso Valencia	Meta, Metan and Cyber Servers.	Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vassilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis	Evaluation of annotation strategies using an entire genome sequence.	Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost	EVA: evaluation of protein structure prediction servers.	Nucleic Acids Research	2003	DBLP DOI BibTeX RDF
1	Alfonso Valencia	Bioinformatics: Biology by other means.	Bioinformatics	2002	DBLP DOI BibTeX RDF
1	Burkhard Rost, Barry Honig, Alfonso Valencia	Bioinformatics in structural genomics - Editorial.	Bioinformatics	2002	DBLP DOI BibTeX RDF
1	Federico Abascal, Alfonso Valencia	Clustering of proximal sequence space for the identification of protein families.	Bioinformatics	2002	DBLP DOI BibTeX RDF
1	Christian Blaschke, Lynette Hirschman, Alfonso Valencia	Information extraction in molecular biology.	Briefings in Bioinformatics	2002	DBLP DOI BibTeX RDF
1	Christian Blaschke, Alfonso Valencia	The Frame-Based Module of the SUISEKI Information Extraction System.	IEEE Intelligent Systems	2002	DBLP DOI BibTeX RDF	frame-based systems, SUISEKI, information extraction, protein interactions
1	Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost	EVA: continuous automatic evaluation of protein structure prediction servers.	Bioinformatics	2001	DBLP DOI BibTeX RDF
1	Javier Herrero, Alfonso Valencia, Joaquín Dopazo	A hierarchical unsupervised growing neural network for clustering gene expression patterns.	Bioinformatics	2001	DBLP DOI BibTeX RDF
1	Russ B. Altman, Alfonso Valencia, Satoru Miyano, Shoba Ranganathan	Challenges for Intelligent Systems in Biology.	IEEE Intelligent Systems	2001	DBLP DOI BibTeX RDF
1	Miguel A. Andrade, N. P. Brown, Christophe Leroy, S. Hörsch, Antoine de Daruvar, C. Reich, A. Franchini, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis, Chris Sander	Automated genome sequence analysis and annotation.	Bioinformatics	1999	DBLP DOI BibTeX RDF
1	Florencio Pazos, Burkhard Rost, Alfonso Valencia	A platform for integrating threading results with protein family analyses.	Bioinformatics	1999	DBLP DOI BibTeX RDF
1	Christian Blaschke, Miguel A. Andrade, Christos A. Ouzounis, Alfonso Valencia	Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions.	ISMB	1999	DBLP BibTeX RDF
1	Miguel A. Andrade, Alfonso Valencia	Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families.	Bioinformatics	1998	DBLP DOI BibTeX RDF
1	Javier Tamames, Christos A. Ouzounis, Georg Casari, Chris Sander, Alfonso Valencia	EUCLID: automatic classification of proteins in functional classes by their database annotations.	Bioinformatics	1998	DBLP DOI BibTeX RDF
1	Oswaldo Trelles, Miguel A. Andrade, Alfonso Valencia, Emilio L. Zapata, José María Carazo	Computational space reduction and parallelization of a new clustering approach for large groups of sequences.	Bioinformatics	1998	DBLP DOI BibTeX RDF
1	Miguel A. Andrade, Georg Casari, Antoine de Daruvar, Chris Sander, Reinhard Schneider, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis	Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function.	Computer Applications in the Biosciences	1997	DBLP DOI BibTeX RDF
1	Florencio Pazos, O. Olmea, Alfonso Valencia	A graphical interface for correlated mutations and other protein structure prediction methods.	Computer Applications in the Biosciences	1997	DBLP BibTeX RDF
1	Miguel A. Andrade, Georg Casari, Chris Sander, Alfonso Valencia	Classification of protein families and detection of the determinant residues with an improved self-organizing map.	Biological Cybernetics	1997	DBLP DOI BibTeX RDF
1	Florencio Pazos, Luis Sánchez-Pulido, Juan A. Garcia-Ranca, Miguel A. Andrade, Silvia Atrian, Alfonso Valencia	Comparative Analysis of Different Methods for the Detection of Specificity Regions in Protein Families.	BCEC	1997	DBLP BibTeX RDF
1	Terry Gaasterland, Peter D. Karp, Kevin Karplus, Christos A. Ouzounis, Chris Sander, Alfonso Valencia (eds.)	Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, Halkidiki, Greece, June 21-26, 1997	ISMB	1997	DBLP BibTeX RDF
1	Miguel A. Andrade, Alfonso Valencia	Automatic Annotation for Biological Sequences by Etraction of Keywords from MEDLINE Abstracts: Development of a Prototype System.	ISMB	1997	DBLP BibTeX RDF
1	Christos A. Ouzounis, Alfonso Valencia, Javier Tamames, Peer Bork, Chris Sander	The Functional Composition of Living Machines as a Design Principle for Artificial Organisms.	ECAL	1995	DBLP DOI BibTeX RDF
1	Michael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander	GeneQuiz: A Workbench for Sequence Analysis.	ISMB	1994	DBLP BibTeX RDF

Publications of "Alfonso Valencia" ( http://dblp.L3S.de/Authors/Alfonso_Valencia )