Search results for "Biology and genetics"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Azzedine Boukerche, Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi	A Hardware Accelerator for the Fast Retrieval of DIALIGN Biological Sequence Alignments in Linear Space.	IEEE Trans. Computers	2010	DBLP DOI BibTeX RDF	dynamic programming, Biology and genetics, special-purpose and application-based systems
1	Jaroslaw Zola, Maneesha Aluru, Abhinav Sarje, Srinivas Aluru	Parallel Information-Theory-Based Construction of Genome-Wide Gene Regulatory Networks.	IEEE Trans. Parallel Distrib. Syst.	2010	DBLP DOI BibTeX RDF	Parallel algorithms, biology and genetics
1	David A. Stephens	Complexity in Systems Level Biology and Genetics: Statistical Perspectives.	Encyclopedia of Complexity and Systems Science	2009	DBLP DOI BibTeX RDF
1	Ana Arribas-Gil, Dirk Metzler, Jean-Louis Plouhinec	Statistical Alignment with a Sequence Evolution Model Allowing Rate Heterogeneity along the Sequence.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	mathematics and statistics, sequence evolution, Markov processes, probabilistic algorithms, biology and genetics
1	David Bryant, Mike A. Steel	Computing the Distribution of a Tree Metric.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	discrete mathematics applications, Robinson-Foulds distance, Poisson approximation, trees, Biology and genetics, phylogenetics, normalization constant
1	Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente	Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	Trees, Graph algorithms, Biology and genetics
1	Stefan Grünewald, Vincent Moulton	Maximum Parsimony for Tree Mixtures.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	Applications, Biology and genetics
1	Marc Hulsman, Marcel J. T. Reinders, Dick de Ridder	Evolutionary Optimization of Kernel Weights Improves Protein Complex Comembership Prediction.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	biology and genetics, Classifier design and evaluation, evolutionary computing and genetic algorithms
1	Kevin Liu, Serita M. Nelesen, Sindhu Raghavan, C. Randal Linder, Tandy Warnow	Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	Markov processes, Biology and genetics
1	Bui Quang Minh, Fabio Pardi, Steffen Klaere, Arndt von Haeseler	Budgeted Phylogenetic Diversity on Circular Split Systems.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	Optimization, Biology and genetics
1	Elchanan Mossel, Sébastien Roch, Mike A. Steel	Shrinkage Effect in Ancestral Maximum Likelihood.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	Markov processes, Biology and genetics
1	Sridharakumar Narasimhan, Raghunathan Rengaswamy, Rajanikanth Vadigepalli	Structural Properties of Gene Regulatory Networks: Definitions and Connections.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	Graph Theory, Data Analysis, System Identification, Network Models, Biology and genetics
1	Yongjin Park, Stanley Shackney, Russell Schwartz	Network-Based Inference of Cancer Progression from Microarray Data.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	machine learning, trees, Biology and genetics, graphs and networks
1	Yanni Sun, Jeremy Buhler	Designing Patterns and Profiles for Faster HMM Search.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	bioinformatics databases, sequence similarity search, hidden Markov models, Biology and genetics
1	Matthias Bernt, Daniel Merkle, Martin Middendorf	Solving the Preserving Reversal Median Problem.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Biology and genetics, Permutations and combinations
1	Clare Bates Congdon, Joseph C. Aman, Gerardo M. Nava, H. Rex Gaskins, Carolyn J. Mattingly	An Evaluation of Information Content as a Metric for the Inference of Putative Conserved Noncoding Regions in DNA Sequences Using a Genetic Algorithms Approach.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Biology and genetics, Evolutionary computing and genetic algorithms
1	Loredana M. Genovese, Filippo Geraci, Marco Pellegrini	SpeedHap: An Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate andLow Coverage.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Algorithms, Biology and genetics
1	Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie	Shorelines of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Biology and genetics, Combinatorial algorithms, Complexity hierarchies
1	Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka	Improving Strand Pairing Prediction through Exploring Folding Cooperativity.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Biology and genetics, Combinatorial algorithms
1	Eagu Kim, John D. Kececioglu	Learning Scoring Schemes for Sequence Alignment from Partial Examples.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Linear programming, Pattern matching, Biology and genetics, Analysis of Algorithms and Problem Complexity
1	Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie-France Sagot	An Introduction to Metabolic Networks and Their Structural Analysis.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Introductory and Survey, modelling, Graph Theory, modularity, evolution, reconstruction, Biology and genetics, metabolic networks
1	Giuseppe Lancia, R. Ravi, Romeo Rizzi	Haplotyping for Disease Association: A Combinatorial Approach.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Biology and genetics, Combinatorics, Discrete Mathematics
1	Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson	Seeded Tree Alignment.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Graph Theory, Trees, Graph algorithms, Biology and genetics, Computer Applications, Discrete Mathematics, Life and Medical Sciences, Mathematics of Computing
1	Jesús P. Mena-Chalco, Helaine Carrer, Yossi Zana, Roberto M. Cesar	Identification of Protein Coding Regions Using the Modified Gabor-Wavelet Transform.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Pattern Recognition, Signal processing, Biology and genetics
1	Alexander Schliep, Roland Krause	Efficient Algorithms for the Computational Design of Optimal Tiling Arrays.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Graph Theory, Biology and genetics
1	Andreas Spillner, Binh T. Nguyen, Vincent Moulton	Computing Phylogenetic Diversity for Split Systems.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Biology and genetics, Life and Medical Sciences
1	Peggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe, Inbal Halperin-Landsberg, Russ B. Altman	Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Robotics, Biology and genetics
1	Wentao Zhao, Erchin Serpedin, Edward R. Dougherty	Inferring Connectivity of Genetic Regulatory Networks Using Information-Theoretic Criteria.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	information theory, Biology and genetics, DNA microarray, genetic regulatory network
1	Julien Lefevre, Sylvain Baillet	Optical Flow and Advection on 2-Riemannian Manifolds: A Common Framework.	IEEE Trans. Pattern Anal. Mach. Intell.	2008	DBLP DOI BibTeX RDF	Hyperbolic equations, Approximation of surfaces and contours, Time-varying imagery, Global optimization, Finite element methods, Partial Differential Equations, Biology and genetics, Data and knowledge visualization, Feature extraction or construction, Elliptic equations
1	Krzysztof Fujarewicz, Marek Kimmel, Tomasz Lipniacki, Andrzej Swierniak	Adjoint Systems for Models of Cell Signaling Pathways and their Application to Parameter Fitting.	IEEE/ACM Trans. Comput. Biology Bioinform.	2007	DBLP DOI BibTeX RDF	modeling, Biology and genetics, ordinary differential equations, parameter learning
1	Gergely Korodi, Ioan Tabus	Compression of Annotated Nucleotide Sequences.	IEEE/ACM Trans. Comput. Biology Bioinform.	2007	DBLP DOI BibTeX RDF	4 [Data]: Coding and Information Theory, F.4 [Theory of Computation]: Mathematical Logic and Formal Languages, G.3 [Mathematics of Computing]: Probability and Statistics, J.3 [Computer Applications]: Life and Medical Sciences, Nucleotide sequences, Annotation, Compression, Markov processes, Formal languages, Biology and genetics, Formal Grammars, Data compaction and compression
1	Frederick A. Matsen III	Optimization Over a Class of Tree Shape Statistics.	IEEE/ACM Trans. Comput. Biology Bioinform.	2007	DBLP DOI BibTeX RDF	Biology and genetics, Evolutionary computing and genetic algorithms
1	Nasimul Noman, Hitoshi Iba	Inferring Gene Regulatory Networks using Differential Evolution with Local Search Heuristics.	IEEE/ACM Trans. Comput. Biology Bioinform.	2007	DBLP DOI BibTeX RDF	Medicine and science, Gene regulatory system, Global optimization, Memetic algorithm, Inverse problems, Biology and genetics, Microarray data, Transcriptional regulation
1	Srinath Sridhar, Kedar Dhamdhere, Guy E. Blelloch, Eran Halperin, R. Ravi, Russell Schwartz	Algorithms for Efficient Near-Perfect Phylogenetic Tree Reconstruction in Theory and Practice.	IEEE/ACM Trans. Comput. Biology Bioinform.	2007	DBLP DOI BibTeX RDF	trees, biology and genetics, computations on discrete structures
1	Sébastien Roch	A Short Proof that Phylogenetic Tree Reconstruction by Maximum Likelihood Is Hard.	IEEE/ACM Trans. Comput. Biology Bioinform.	2006	DBLP DOI BibTeX RDF	probability and statistics, biology and genetics, Analysis of algorithms and problem complexity
1	Daniel G. Brown 0001, Ian M. Harrower	Integer Programming Approaches to Haplotype Inference by Pure Parsimony.	IEEE/ACM Trans. Comput. Biology Bioinform.	2006	DBLP DOI BibTeX RDF	integer programming, biology and genetics, haplotype inference, Computations on discrete structures
1	Samuel A. Danziger, Sanjay Joshua Swamidass, Jue Zeng, Lawrence R. Dearth, Qiang Lu, Jonathan H. Chen, Jianlin Cheng, Vinh P. Hoang, Hiroto Saigo, Ray Luo, Pierre Baldi, Rainer K. Brachmann, Richard H. Lathrop	Functional Census of Mutation Sequence Spaces: The Example of p53 Cancer Rescue Mutants.	IEEE/ACM Trans. Comput. Biology Bioinform.	2006	DBLP DOI BibTeX RDF	medicine and science, machine learning, Biology and genetics, feature extraction or construction
1	Matti Pirinen, Dario Gasbarra	Finding Consistent Gene Transmission Patterns on Large and Complex Pedigrees.	IEEE/ACM Trans. Comput. Biology Bioinform.	2006	DBLP DOI BibTeX RDF	sorting and searching, consistent genotype configuration, constraint satisfaction, biology and genetics, Backtracking, heuristic methods, pedigree
1	Petteri Sevon, Hannu Toivonen, Vesa Ollikainen	TreeDT: Tree Pattern Mining for Gene Mapping.	IEEE/ACM Trans. Comput. Biology Bioinform.	2006	DBLP DOI BibTeX RDF	nonnumerical algorithms and problems, Biology and genetics, nonparametric statistics
1	Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail	Islands of Tractability for Parsimony Haplotyping.	IEEE/ACM Trans. Comput. Biology Bioinform.	2006	DBLP DOI BibTeX RDF	graph algorithms, Biology and genetics, analysis of algorithms and problem complexity
1	Robert Henschel, Matthias S. Müller, Yannis Kalaidzidis	High Throughput Image Analysis on PetaFLOPS Systems.	Euro-Par Workshops	2006	DBLP DOI BibTeX RDF
1	Songlin Fei	Hotspot detection for chestnut oak regeneration.	DG.O	2005	DBLP DOI BibTeX RDF	ClusterSeer, SaTScan, forest health, oak regeneration, ranking, biology and genetics, classification tree
1	Riccardo Boscolo, Chiara Sabatti, James C. Liao, Vwani P. Roychowdhury	A Generalized Framework for Network Component Analysis.	IEEE/ACM Trans. Comput. Biology Bioinform.	2005	DBLP DOI BibTeX RDF	data analysis, System identification, network models, biology and genetics
1	Daniel G. Brown 0001	Optimizing Multiple Seeds for Protein Homology Search.	IEEE/ACM Trans. Comput. Biology Bioinform.	2005	DBLP DOI BibTeX RDF	Bioinformatics database applications, similarity measures, biology and genetics
1	Cesare Furlanello, Maria Serafini, Stefano Merler, Giuseppe Jurman	Semisupervised Learning for Molecular Profiling.	IEEE/ACM Trans. Comput. Biology Bioinform.	2005	DBLP DOI BibTeX RDF	bioinformatics databases, data mining, clustering, Machine learning, similarity measures, biology and genetics, pattern analysis, classifier design and evaluation, feature evaluation and selection
1	Mikael Gustafsson, Michael Hornquist, Anna Lombardi	Constructing and Analyzing a Large-Scale Gene-to-Gene Regulatory Network-Lasso-Constrained Inference and Biological Validation.	IEEE/ACM Trans. Comput. Biology Bioinform.	2005	DBLP DOI BibTeX RDF	outdegree, validation, time series analysis, Biology and genetics, gene network, Lasso, network problems, network inference, yeast
1	Samuel Kaski, Janne Nikkilä, Janne Sinkkonen, Leo Lahti, Juha E. A. Knuuttila, Christophe Roos	Associative Clustering for Exploring Dependencies between Functional Genomics Data Sets.	IEEE/ACM Trans. Comput. Biology Bioinform.	2005	DBLP DOI BibTeX RDF	contingency table analysis, clustering, machine learning, Biology and genetics, multivariate statistics
1	Hiroshi Mamitsuka	Essential Latent Knowledge for Protein-Protein Interactions: Analysis by an Unsupervised Learning Approach.	IEEE/ACM Trans. Comput. Biology Bioinform.	2005	DBLP DOI BibTeX RDF	data mining, machine learning, Biology and genetics, mining methods and algorithms
1	Susan L. Havre, Bobbie-Jo M. Webb-Robertson, Anuj R. Shah, Christian Posse, Banu Gopalan, Fred J. Brockman	Bioinformatic Insights from Metagenomics through Visualization.	CSB	2005	DBLP DOI BibTeX RDF	visualization, bioinformatics, categorical, metagenomics, nominal
1	Jens Gramm	A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns.	IEEE/ACM Trans. Comput. Biology Bioinform.	2004	DBLP DOI BibTeX RDF	Pattern matching, biology and genetics, algorithm design and analysis
1	Stefanie Scheid, Rainer Spang	A Stochastic Downhill Search Algorithm for Estimating the Local False Discovery Rate.	IEEE/ACM Trans. Comput. Biology Bioinform.	2004	DBLP DOI BibTeX RDF	Local false discovery rates, stochastic search algorithms, biology and genetics, microarray analysis
1	Eric J. Glover, David M. Pennock, Steve Lawrence, Robert Krovetz	Inferring hierarchical descriptions.	CIKM	2002	DBLP DOI BibTeX RDF	cluster naming, hierarchical relationships, feature selection, statistical models, web analysis
1	Ross D. King, Andreas Karwath, Amanda Clare, Luc Dehaspe	Genome scale prediction of protein functional class from sequence using data mining.	KDD	2000	DBLP DOI BibTeX RDF	data mining, learning, biology and genetics, concept learning, database applications, life and medical sciences
1	Dominic A. Clark, Christopher J. Rawlings, Jack Shirazi	Applications of Parallel Constraint Logic Programming to Molecular Biology and Genetics.	HPCN	1994	DBLP DOI BibTeX RDF
1	Gérard A. Langlet	Towards the Ultimate APL-TOE.	APL	1992	DBLP DOI BibTeX RDF	Fibonacci, T.O.E., binary algebra, periodic systems, APL, APL, integrals, topology, dynamical systems, symmetry, automata, fractals, chaos, genetics, propagation, holography, parity
1	S. Barron, M. Witten, R. Harkness, J. Driver	A bibliography on computational algorithms in molecular biology and genetics.	Computer Applications in the Biosciences	1991	DBLP DOI BibTeX RDF