Search results for "Biomedical ontologies"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
2	Sine Zambach	A Formal Framework on the Semantics of Regulatory Relations and Their Presence as Verbs in Biomedical Texts.	FQAS	2009	DBLP DOI BibTeX RDF	Formal relations, domain analysis, biomedical ontologies, corpus analysis
2	Catia Pesquita, Tiago Grego, Francisco M. Couto	Identifying Gene Ontology Areas for Automated Enrichment.	IWANN	2009	DBLP DOI BibTeX RDF	ontology enrichment, text mining, ontology alignment, Biomedical ontologies
2	Francisco M. Carrero, José Carlos Cortizo, José María Gómez	Building a Spanish MMTx by Using Automatic Translation and Biomedical Ontologies.	IDEAL	2008	DBLP DOI BibTeX RDF	data pre and post processing, recommender systems, information filtering, Semantic techniques
2	Tharam S. Dillon, Elizabeth Chang, Maja Hadzic	Ontology Support for Biomedical Information Resources.	CBMS	2008	DBLP DOI BibTeX RDF	semantics, intelligent systems, biomedical ontologies
2	Clement Jonquet, Mark A. Musen, Nigam Shah	A System for Ontology-Based Annotation of Biomedical Data.	DILS	2008	DBLP DOI BibTeX RDF	biomedical data integration, semantic expansion, concept recognition, biomedical ontologies, ontology-based annotation
2	Harith Alani, Natasha Fridman Noy, Nigam Shah, Nigel Shadbolt, Mark A. Musen	Searching ontologies based on content: experiments in the biomedical domain.	K-CAP	2007	DBLP DOI BibTeX RDF	ontology searching, biomedical ontologies, ontology analysis
2	He Tan, Vaida Jakoniene, Patrick Lambrix, Johan Aberg, Nahid Shahmehri	Alignment of Biomedical Ontologies Using Life Science Literature.	KDLL	2006	DBLP DOI BibTeX RDF
2	Guang-Lei Song, Yu Qian, Ying Liu, Kang Zhang	Oasis: A Mapping and Integration Framework for Biomedical Ontologies.	CBMS	2006	DBLP DOI BibTeX RDF
2	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang	Protein Data Sources Management Using Semantics.	ASWC	2006	DBLP DOI BibTeX RDF	Knowledge Mana-gement, Information Retrieval, Data Integration, Data Semantics, Biomedical Ontologies, Protein Ontology
2	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang, Baldev S. Sidhu	OWL, Proteins and Data Integration.	Australian Conference on Artificial Intelligence	2005	DBLP DOI BibTeX RDF	Information Retrieval, Knowledge Representation, Data Integration, Biomedical Ontologies, Protein Ontology
2	David Pérez-Rey, Victor Maojo, Miguel García-Remesal, Raúl Alonso-Calvo	Biomedical Ontologies in Post-Genomic Information Systems.	BIBE	2004	DBLP DOI BibTeX RDF	Ontologies, information retrieval, decision support systems, knowledge discovery in databases, database integration, biomedical informatics
1	Watson Wei Khong Chua, Jung-Jae Kim	BOAT: Automatic alignment of biomedical ontologies using term informativeness and candidate selection.	Journal of Biomedical Informatics	2012	DBLP DOI BibTeX RDF
1	Martin Boeker, Ilinca Tudose, Janna Hastings, Daniel Schober, Stefan Schulz	Unintended consequences of existential quantifications in biomedical ontologies.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul Schofield, Georgios V. Gkoutos	A common layer of interoperability for biomedical ontologies based on OWL EL.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	James A. Overton, Cesare Romagnoli, Rethy Chhem	Open Biomedical Ontologies applied to prostate cancer.	Applied Ontology	2011	DBLP DOI BibTeX RDF
1	Vivian Santos Silva, Maria Luiza Machado Campos, João Carlos Pereira Silva, Maria Cláudia Cavalcanti	An Approach for the Alignment of Biomedical Ontologies based on Foundational Ontologies.	JIDM	2011	DBLP BibTeX RDF
1	K. Saruladha, G. Aghila, A. Bhuvaneswary	Information Content Based Semantic Similarity Approaches for Multiple Biomedical Ontologies.	ACC	2011	DBLP DOI BibTeX RDF
1	Arash Shaban-Nejad, Volker Haarslev	An enhanced graph-oriented approach for change management in distributed biomedical ontologies and linked data.	BIBM Workshops	2011	DBLP DOI BibTeX RDF
1	Pengfei Sun, Songmao Zhang	Using Rules to Investigate the Differences in Partonomy between Biomedical Ontologies.	BIBM	2011	DBLP DOI BibTeX RDF
1	Stefan Schulz, Pablo López-García	Modularity Issues in Biomedical Ontologies.	WoMO	2011	DBLP DOI BibTeX RDF
1	Juana María Ruiz-Martínez, Rafael Valencia-García, Rodrigo Martínez-Béjar	BioOntoVerb Framework: Integrating Top Level Ontologies and Semantic Roles to Populate Biomedical Ontologies.	NLDB	2011	DBLP DOI BibTeX RDF
1	Dimitra G. Alexopoulou	Word-sense disambiguation in biomedical ontologies.		2010	RDF
1	Halit Erdogan, Umut Öztok, Yelda Erdem, Esra Erdem	Querying Biomedical Ontologies in Natural Language using Answer Set	CoRR	2010	DBLP BibTeX RDF
1	Juana María Ruiz-Martínez, Rafael Valencia-García, Rodrigo Martínez-Béjar, Achim G. Hoffmann	Populating Biomedical Ontologies from Natural Language Texts.	KEOD	2010	DBLP BibTeX RDF
1	Martin J. O'Connor, Amar K. Das	A Lightweight Model for Representing and Reasoning with Temporal Information in Biomedical Ontologies.	HEALTHINF	2010	DBLP BibTeX RDF
1	Halit Erdogan, Umut Öztok, Yelda Erdem, Esra Erdem	Querying Biomedical Ontologies in Natural Language using Answer Set Programming.	SWAT4LS	2010	DBLP BibTeX RDF
1	Guo-Qiang Zhang, Olivier Bodenreider	Using SPARQL to Test for Lattices: Application to Quality Assurance in Biomedical Ontologies.	International Semantic Web Conference	2010	DBLP DOI BibTeX RDF
1	Ernesto Jiménez-Ruiz, Bernardo Cuenca Grau, Ian Horrocks, Rafael Berlanga Llavori	Towards a UMLS-based silver standard for matching biomedical ontologies.	OM	2010	DBLP BibTeX RDF
1	Boontawee Suntisrivaraporn	Polynomial time reasoning support for design and maintenance of large-scale biomedical ontologies.		2009	RDF
1	Catia Pesquita, Daniel Faria, André O. Falcão, Phillip Lord, Francisco M. Couto	Semantic Similarity in Biomedical Ontologies.	PLoS Computational Biology	2009	DBLP DOI BibTeX RDF
1	Troels Andreasen, Henrik Bulskov, Tine Lassen, Sine Zambach, Per Anker Jensen, Bodil Nistrup Madsen, Hanne Erdman Thomsen, Jørgen Fischer Nilsson, Bartlomiej Antoni Szymczak	SIABO - Semantic Information Access through Biomedical Ontologies.	KEOD	2009	DBLP BibTeX RDF
1	Giulio Napolitano, Alejandra González Beltrán, Colin Fox, Adele Marshall, Anthony Finkelstein, Peter McCarron	Biomedical Ontologies and Grid Computing - As New Resources for Cancer Registries.	HEALTHINF	2009	DBLP BibTeX RDF
1	Priyanka Sharad Prabhu, Shamkant B. Navathe, Stephen Tyler, Venu Dasigi, Neha Narkhede, Balaji Palanisamy	LITSEEK: public health literature search by metadata enhancement with external knowledge bases.	DTMBIO	2009	DBLP DOI BibTeX RDF	pharmacogenomics, information retrieval, search, text mining, knowledge bases, metadata integration
1	Manuel Möller, Sven Regel, Michael Sintek	RadSem: Semantic Annotation and Retrieval for Medical Images.	ESWC	2009	DBLP DOI BibTeX RDF
1	Toralf Kirsten, Michael Hartung, Anika Gross, Erhard Rahm	Efficient Management of Biomedical Ontology Versions.	OTM Workshops	2009	DBLP DOI BibTeX RDF	Ontology versioning, integration, management
1	Franz Baader, Barbara Morawska	Unification in the Description Logic EL.	RTA	2009	DBLP DOI BibTeX RDF
1	Saeed Hassanpour, Martin J. O'Connor, Amar K. Das	Exploration of SWRL Rule Bases through Visualization, Paraphrasing, and Categorization of Rules.	RuleML	2009	DBLP DOI BibTeX RDF	Rule Abstraction, Rule Patterns, Rule Visualization, Rule Paraphrasing, Rule Categorization, Knowledge Representation, OWL, SWRL, Rule Management
1	Amir Ghazvinian, Natalya Fridman Noy, Clement Jonquet, Nigam H. Shah, Mark A. Musen	What Four Million Mappings Can Tell You about Two Hundred Ontologies.	International Semantic Web Conference	2009	DBLP DOI BibTeX RDF
1	Arash Shaban-Nejad, Volker Haarslev	Bio-medical Ontologies Maintenance and Change Management.	Biomedical Data and Applications	2009	DBLP DOI BibTeX RDF
1	Illhoi Yoo, Min Song	Biomedical Ontologies and Text Mining for Biomedicine and Healthcare: A Survey.	JCSE	2008	DBLP BibTeX RDF
1	J. Stuart Aitken, Yin Chen, Jonathan Bard	OBO Explorer: an editor for open biomedical ontologies in OWL.	Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Bill Andreopoulos, Dimitra Alexopoulou, Michael Schroeder	Word Sense Disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering.	IJDMB	2008	DBLP DOI BibTeX RDF
1	Daniel L. Rubin, Nigam Shah, Natalya Fridman Noy	Biomedical ontologies: a functional perspective.	Briefings in Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Daniel L. Rubin, Dilvan A. Moreira, Pradip Kanjamala, Mark A. Musen	BioPortal: A Web Portal to Biomedical Ontologies.	AAAI Spring Symposium: Symbiotic Relationships between Semantic Web and Knowledge Engineering	2008	DBLP BibTeX RDF
1	Natalya Fridman Noy, Nigam Shah, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Michael Montegut, Daniel L. Rubin, Cherie Youn, Mark A. Musen	BioPortal: A Web Repository for Biomedical Ontologies and Data Resources.	International Semantic Web Conference (Posters & Demos)	2008	DBLP BibTeX RDF
1	Francisco M. Carrero, José Carlos Cortizo, José María Gómez, Manuel de Buenaga Rodríguez	In the development of a spanish metamap.	CIKM	2008	DBLP DOI BibTeX RDF	information filtering, data pre-processing, semantic techniques
1	He Tan	Knowledge-based gene symbol disambiguation.	DTMBIO	2008	DBLP DOI BibTeX RDF	gene symbol disambuguation, biomedical text mining
1	Francisco M. Carrero, José Carlos Cortizo, José María Gómez	Testing concept indexing in crosslingual medical text classification.	ICDIM	2008	DBLP DOI BibTeX RDF
1	Boontawee Suntisrivaraporn	Module Extraction and Incremental Classification: A Pragmatic Approach for Ontologies.	ESWC	2008	DBLP DOI BibTeX RDF
1	Arash Shaban-Nejad, Volker Haarslev	Incremental Biomedical Ontology Change Management through Learning Agents.	KES-AMSTA	2008	DBLP DOI BibTeX RDF	Bio-Ontologies, Learning, Multi-Agent, Change Management, Category Theory
1	Mathias Brochhausen, Gabriele Weiler, Luis Martín, Cristian Cocos, Holger Stenzhorn, Norbert M. Graf, Martin Doerr, Manolis Tsiknakis, Barry Smith	Applications of the ACGT Master Ontology on Cancer.	OTM Workshops	2008	DBLP DOI BibTeX RDF	mediation, biomedical ontology, clinical trials
1	Tharam S. Dillon	SWWS 2008 PC Co-chairs' Message.	OTM Workshops	2008	DBLP DOI BibTeX RDF
1	Paolo Romano 0001, Andrea Splendiani	Applications of Semantic Web Methodologies and Techniques to Biology and Bioinformatics.	Reasoning Web	2008	DBLP DOI BibTeX RDF	biological data integration, molecular biology databases, bio-ontologies, semantic web applications
1	Natalya Fridman Noy, Nicholas Griffith, Mark A. Musen	Collecting Community-Based Mappings in an Ontology Repository.	International Semantic Web Conference	2008	DBLP DOI BibTeX RDF
1	Robert Hoehndorf, Frank Loebe, Janet Kelso, Heinrich Herre	Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Thomas Bittner, Louis J. Goldberg	The qualitative and time-dependent character of spatial relations in biomedical ontologies.	Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Deendayal Dinakarpandian, Tuanjie Tong, Yugyung Lee	A pragmatic approach to mapping the open biomedical ontologies.	IJBRA	2007	DBLP DOI BibTeX RDF
1	Holger Stenzhorn, Elena Beisswanger, Stefan Schulz	Towards a Top-Domain Ontology for Linking Biomedical Ontologies.	MedInfo	2007	DBLP DOI BibTeX RDF
1	Kaustubh Supekar, Daniel L. Rubin, Natasha F. Noy, Mark A. Musen	Knowledge Zone: A Public Repository of Peer-Reviewed Biomedical Ontologies.	MedInfo	2007	DBLP DOI BibTeX RDF
1	Marie-Noëlle Terrasse, Marinette Savonnet, Eric Leclercq, George Becker, Eric Fourmentin, Damien Lariviere, Pierre Grenon, Magali Roux-Rouquie	Metamodeling Integration Architecture for Open Biomedical Ontologies: The GO Extensions' Case Study.	ER (Tutorials, Posters, Panels & Industrial Contributions)	2007	DBLP BibTeX RDF
1	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang	Protein Ontology Project in 2007: Looking Backward and Forward.	CBMS	2007	DBLP DOI BibTeX RDF	Protein Informatics, Data Integration, Bioinformatics, Proteomics, Data Semantics, Biomedical Ontologies, Protein Ontology
1	Ramez Elmasri, Jack Fu, Feng Ji	Multi-level Conceptual Modeling for Biomedical Data and Ontologies Integration.	CBMS	2007	DBLP DOI BibTeX RDF
1	He Tan, Patrick Lambrix	A Method for Recommending Ontology Alignment Strategies.	ISWC/ASWC	2007	DBLP DOI BibTeX RDF
1	Maureen Donnelly, Thomas Bittner, Cornelius Rosse	A formal theory for spatial representation and reasoning in biomedical ontologies.	Artificial Intelligence in Medicine	2006	DBLP DOI BibTeX RDF
1	Patrick Lambrix, He Tan	SAMBO - A system for aligning and merging biomedical ontologies.	J. Web Sem.	2006	DBLP DOI BibTeX RDF
1	Stefan Schulz, Anand Kumar, Thomas Bittner	Biomedical ontologies: What part-of is and isn't.	Journal of Biomedical Informatics	2006	DBLP DOI BibTeX RDF
1	Patryk Burek, Robert Hoehndorf, Frank Loebe, Johann Visagie, Heinrich Herre, Janet Kelso	A top-level ontology of functions and its application in the Open Biomedical Ontologies.	ISMB (Supplement of Bioinformatics)	2006	DBLP DOI BibTeX RDF
1	Gwenaëlle Marquet, Jean Mosser, Anita Burgun	Aligning biomedical ontologies using lexical methods and the UMLS: the case of Disease ontologies.	MIE	2006	DBLP DOI BibTeX RDF
1	Mathias Brochhausen	The Derives_From Relation in Biomedical Ontologies.	MIE	2006	DBLP DOI BibTeX RDF
1	Petr Kolesa, Petra Precková	Tools for Czech Biomedical Ontologies Creation.	MIE	2006	DBLP DOI BibTeX RDF
1	Andrew Dolbey, Michael Ellsworth, Jan Scheffczyk	BioFrameNet: A Domain-Specific FrameNet Extension with Links to Biomedical Ontologies.	KR-MED	2006	DBLP BibTeX RDF
1	Thomas Bittner, Louis J. Goldberg	The Qualitative and Time-Dependent Character of Spatial Relations in Biomedical Ontologies.	KR-MED	2006	DBLP BibTeX RDF
1	Mary E. Dolan, Judith A. Blake	Using Ontology Visualization to Coordinate Cross-species Functional Annotation for Human Disease Genes.	CBMS	2006	DBLP DOI BibTeX RDF
1	Farookh Khadeer Hussain, Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang	Engineering Trustworthy Ontologies: Case Study of Protein Ontology.	CBMS	2006	DBLP DOI BibTeX RDF
1	Amarnath Gupta, Simone Santini	On Querying OBO Ontologies Using a DAG Pattern Query Language.	DILS	2006	DBLP DOI BibTeX RDF
1	Ernesto Jiménez-Ruiz, Rafael Berlanga Llavori, Ismael Sanz, Richard McClatchey, Roxana Dánger, David Manset, Jordi Paraire, A. Rios	The Management and Integration of Biomedical Knowledge: Application in the Health-e-Child Project (Position Paper).	OTM Workshops	2006	DBLP DOI BibTeX RDF	Vertical Knowledge Integration, Ontology Views, Semantic Bridges, Approximate Queries
1	Andreas Doms, Vaida Jakoniene, Patrick Lambrix, Michael Schroeder, Thomas Wächter	Ontologies and Text Mining as a Basis for a Semantic Web for the Life Sciences.	Reasoning Web	2006	DBLP DOI BibTeX RDF
1	Alan L. Rector, Jeremy Rogers	Ontological and Practical Issues in Using a Description Logic to Represent Medical Concept Systems: Experience from GALEN.	Reasoning Web	2006	DBLP DOI BibTeX RDF
1	Stefan Schulz, Udo Hahn	Part-whole representation and reasoning in formal biomedical ontologies.	Artificial Intelligence in Medicine	2005	DBLP DOI BibTeX RDF
1	Hee-Joon Chung, Chan Hee Park, Mi Ryung Han, Seokho Lee, Jung Hun Ohn, Jihoon Kim, Jihun Kim, Ju Han Kim	ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics.	Nucleic Acids Research	2005	DBLP DOI BibTeX RDF
1	Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray	Session Introduction: Biomedical Ontologies.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
1	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang	Creating a Protein Ontology Resource.	CSB Workshops	2005	DBLP DOI BibTeX RDF	Protein Informatics, Biomedical Systems, Data Integration, Systems Biology, Biomedical Ontologies, Protein Ontology
1	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang, Baldev S. Sidhu	Protein Ontology: Vocabulary for Protein Data.	ICITA	2005	DBLP DOI BibTeX RDF	Protein Informatics, Biomedical Systems, Data Integration, Systems Biology, Biomedical Ontologies, Protein Ontology
1	Xiaohua Hu, Illhoi Yoo, Min Song, Yanqing Zhang, Il-Yeol Song	Mining undiscovered public knowledge from complementary and non-interactive biomedical literature through semantic pruning.	CIKM	2005	DBLP DOI BibTeX RDF	Swanson, automatic semantic pruning, text mining, MeSH, UMLS, biomedical ontology, Medline
1	Xiaohua Hu, Guangrong Li, Illhoi Yoo, Xiaodan Zhang, Xuheng Xu	A semantic-based approach for mining undiscovered public knowledge from biomedical literature.	GrC	2005	DBLP DOI BibTeX RDF
1	Sougata Mukherjea, Bhuvan Bamba, Pankaj Kankar	Information Retrieval and Knowledge Discovery Utilizing a BioMedical Patent Semantic Web.	IEEE Trans. Knowl. Data Eng.	2005	DBLP DOI BibTeX RDF	Semantic Web, information extraction, Biomedical information retrieval
1	Natalya Fridman Noy, Daniel L. Rubin, Mark A. Musen	Making Biomedical Ontologies and Ontology Repositories Work.	IEEE Intelligent Systems	2004	DBLP DOI BibTeX RDF	ontology repositories, Protégé, ontologies
1	Barry Smith, Jacob Köhler, Anand Kumar	On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology.	DILS	2004	DBLP DOI BibTeX RDF
1	Jude W. Shavlik	Scaling Up ILP: Experiences with Extracting Relations from Biomedical Text.	ILP	2004	DBLP DOI BibTeX RDF
1	Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray	Biomedical Ontologies - Session Introduction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
1	Anand Kumar, Barry Smith	The Universal Medical Language System and the Gene Ontology: Some Critical Reflections.	KI	2003	DBLP DOI BibTeX RDF