Search results for "DNA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
2	Elizabeth Goode, William DeLorbe	DNA Splicing Systems.	DNA	2007	DBLP DOI BibTeX RDF	splicing systems, limit languages, differential eqs, DNA
2	John S. Conery, Warner L. Peticolas, Thomas Rush III, Kesavan Shanmugam, Jose Dominguez	A parallel algorithm for calculating the potential energy in DNA.	HICSS	1995	DBLP DOI BibTeX RDF	bioelectric phenomena, potential energy, Dreiding force field, seven-term equation, bonded atoms, electrostatic interactions, nonbonded terms, MasPar MP-I, SGI workstation, long polymeric structure, deoxyribonucleic acid, parallel algorithms, parallel algorithm, execution time, DNA, DNA, biology computing, sequential program, molecule, molecular biophysics, data-parallel algorithm
2	Darren M. Platt, Trevor I. Dix	A model for comparing genomic restriction maps.	HICSS	1995	DBLP DOI BibTeX RDF	genomic restriction map comparison, genetic physical maps, genomic extracts, plausible maps, minimum message length principles, fragment length data, clone fingerprinting, sequence tagged sites, map structure, mapping program, error parameters, mapping process, uncertainties, statistical analysis, errors, DNA, DNA, genetics, biology computing, objective function, optimal solution
1	Tuomo Lempiäinen, Eugen Czeizler, Pekka Orponen	Synthesizing Small and Reliable Tile Sets for Patterned DNA Self-assembly.	DNA	2011	DBLP DOI BibTeX RDF
1	Jack H. Lutz	The Computer Science of Molecular Programming.	DNA	2011	DBLP DOI BibTeX RDF
1	Stavros Konstantinidis, Nicolae Santean	Computing Maximal Kleene Closures That Are Embeddable in a Given Constrained DNA Language.	DNA	2011	DBLP DOI BibTeX RDF
1	Robert Brijder, Joris J. M. Gillis, Jan Van den Bussche	Graph-Theoretic Formalization of Hybridization in DNA Sticker Complexes.	DNA	2011	DBLP DOI BibTeX RDF
1	Yasubumi Sakakibara, Yongli Mi (eds.)	DNA Computing and Molecular Programming - 16th International Conference, DNA 16, Hong Kong, China, June 14-17, 2010, Revised Selected Papers	DNA	2011	DBLP DOI BibTeX RDF
1	Harish Chandran, Nikhil Gopalkrishnan, Andrew Phillips, John H. Reif	Localized Hybridization Circuits.	DNA	2011	DBLP DOI BibTeX RDF
1	Luca Cardelli, William M. Shih (eds.)	DNA Computing and Molecular Programming - 17th International Conference, DNA 17, Pasadena, CA, USA, September 19-23, 2011. Proceedings	DNA	2011	DBLP DOI BibTeX RDF
1	Matthew J. Patitz, Robert T. Schweller, Scott M. Summers	Exact Shapes and Turing Universality at Temperature 1 with a Single Negative Glue.	DNA	2011	DBLP DOI BibTeX RDF
1	Hao Yan	Designer DNA Architectures for Bionanotechnology.	DNA	2011	DBLP DOI BibTeX RDF
1	Sunaina Surana, Souvik Modi, Yamuna Krishnan	An Autonomous DNA Nanodevice Captures pH Maps of Living Cells in Culture and in Vivo.	DNA	2011	DBLP DOI BibTeX RDF
1	Mark J. Olah, Darko Stefanovic	Multivalent Random Walkers - A Model for Deoxyribozyme Walkers.	DNA	2011	DBLP DOI BibTeX RDF
1	Vincent Danos, Heinz Koeppl, John Wilson-Kanamori	Cooperative Assembly Systems.	DNA	2011	DBLP DOI BibTeX RDF
1	Mark G. Arnold	An Improved DNA-Sticker Addition Algorithm and Its Application to Logarithmic Arithmetic.	DNA	2011	DBLP DOI BibTeX RDF
1	Anne Condon, Alan J. Hu, Ján Manuch, Chris Thachuk	Less Haste, Less Waste: On Recycling and Its Limits in Strand Displacement Systems.	DNA	2011	DBLP DOI BibTeX RDF
1	Nilesh Vaidya, Jessica Mellor, Niles Lehman	Cooperation in an All-RNA Network.	DNA	2011	DBLP DOI BibTeX RDF
1	Oleg Semenov, Mark J. Olah, Darko Stefanovic	Multiple Molecular Spiders with a Single Localized Source - The One-Dimensional Case - (Extended Abstract).	DNA	2011	DBLP DOI BibTeX RDF
1	Matthew R. Lakin, Andrew Phillips	Modelling, Simulating and Verifying Turing-Powerful Strand Displacement Systems.	DNA	2011	DBLP DOI BibTeX RDF
1	Erik D. Demaine, Sarah Eisenstat, Mashhood Ishaque, Andrew Winslow	One-Dimensional Staged Self-assembly.	DNA	2011	DBLP DOI BibTeX RDF
1	Alfonso Rodríguez-Patón, Iñaki Sainz de Murieta, Petr Sosík	Autonomous Resolution Based on DNA Strand Displacement.	DNA	2011	DBLP DOI BibTeX RDF
1	David Yu Zhang, Georg Seelig	DNA-Based Fixed Gain Amplifiers and Linear Classifier Circuits.	DNA	2010	DBLP DOI BibTeX RDF
1	Ehsan Chiniforooshan, David Doty, Lila Kari, Shinnosuke Seki	Scalable, Time-Responsive, Digital, Energy-Efficient Molecular Circuits Using DNA Strand Displacement.	DNA	2010	DBLP DOI BibTeX RDF
1	Lulu Qian, David Soloveichik, Erik Winfree	Efficient Turing-Universal Computation with DNA Polymers.	DNA	2010	DBLP DOI BibTeX RDF
1	Max H. Garzon, Tit-Yee Wong	Search and Validation of Short Genome-Wide Biomarkers for Bacterial Biological Phylogenies.	DNA	2010	DBLP DOI BibTeX RDF
1	David Doty, Lila Kari, Benoît Masson	Negative Interactions in Irreversible Self-assembly.	DNA	2010	DBLP DOI BibTeX RDF
1	Xingguo Liang, Toshio Mochizuki, Taiga Fujii, Hiromu Kashida, Hiroyuki Asanuma	Design of a Functional Nanomaterial with Recognition Ability for Constructing Light-Driven Nanodevices.	DNA	2010	DBLP DOI BibTeX RDF
1	Yuriy Brun	Improving Efficiency of 3-SAT-Solving Tile Systems.	DNA	2010	DBLP DOI BibTeX RDF
1	Rebecca Schulman, Erik Winfree	Simple Evolution of Complex Crystal Species.	DNA	2010	DBLP DOI BibTeX RDF
1	Lila Kari, Shinnosuke Seki, Zhi Xu	Triangular Tile Self-assembly Systems.	DNA	2010	DBLP DOI BibTeX RDF
1	David Yu Zhang	Towards Domain-Based Sequence Design for DNA Strand Displacement Reactions.	DNA	2010	DBLP DOI BibTeX RDF
1	Nikhil Gopalkrishnan, Harish Chandran, John H. Reif	High-Fidelity DNA Hybridization Using Programmable Molecular DNA Devices.	DNA	2010	DBLP DOI BibTeX RDF
1	Hiroto Sakai, Yusuke Ogura, Jun Tanida	Reversible Transition of Photonic DNA Automaton Using Hairpin-DNA Responding to a Single Kind of Photonic Signal.	DNA	2010	DBLP DOI BibTeX RDF
1	Ho-Lin Chen, Ming-Yang Kao	Optimizing Tile Concentrations to Minimize Errors and Time for DNA Tile Self-assembly Systems.	DNA	2010	DBLP DOI BibTeX RDF
1	Elton Graugnard, Amber Cox, Jeunghoon Lee, Cheryl Jorcyk, Bernard Yurke, William L. Hughes	Operation of a DNA-Based Autocatalytic Network in Serum.	DNA	2010	DBLP DOI BibTeX RDF
1	Mika Göös, Pekka Orponen	Synthesizing Minimal Tile Sets for Patterned DNA Self-assembly.	DNA	2010	DBLP DOI BibTeX RDF
1	Vamsi Kundeti, Sanguthevar Rajasekaran	Randomized Self Assembly of Rectangular Nano Structures.	DNA	2010	DBLP DOI BibTeX RDF
1	Aaron Sterling	Distributed Agreement in Tile Self-assembly.	DNA	2009	DBLP DOI BibTeX RDF
1	Luca Cardelli	Strand Algebras for DNA Computing.	DNA	2009	DBLP DOI BibTeX RDF
1	Urmi Majumder, John H. Reif	Design of a Biomolecular Device That Executes Process Algebra.	DNA	2009	DBLP DOI BibTeX RDF
1	David Doty, Matthew J. Patitz, Scott M. Summers	Limitations of Self-assembly at Temperature One.	DNA	2009	DBLP DOI BibTeX RDF
1	Hiroto Sakai, Yusuke Ogura, Jun Tanida	Positional State Representation and Its Transition Control for Photonic DNA Automaton.	DNA	2009	DBLP DOI BibTeX RDF
1	Ján Manuch, Chris Thachuk, Ladislav Stacho, Anne Condon	NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots.	DNA	2009	DBLP DOI BibTeX RDF
1	Ibuki Kawamata, Fumiaki Tanaka, Masami Hagiya	Automatic Design of DNA Logic Gates Based on Kinetic Simulation.	DNA	2009	DBLP DOI BibTeX RDF
1	Ashish Goel, Morteza Ibrahimi	Renewable, Time-Responsive DNA Logic Gates for Scalable Digital Circuits.	DNA	2009	DBLP DOI BibTeX RDF
1	Russell J. Deaton, Akira Suyama (eds.)	DNA Computing and Molecular Programming, 15th International Conference, DNA 15, Fayetteville, AR, USA, June 8-11, 2009, Revised Selected Papers	DNA	2009	DBLP DOI BibTeX RDF
1	Steven M. Kautz, James I. Lathrop	Self-assembly of the Discrete Sierpinski Carpet and Related Fractals.	DNA	2009	DBLP DOI BibTeX RDF
1	Ashish Goel, Friedrich C. Simmel, Petr Sosík (eds.)	DNA Computing, 14th International Meeting on DNA Computing, DNA 14, Prague, Czech Republic, June 2-9, 2008. Revised Selected Papers	DNA	2009	DBLP DOI BibTeX RDF
1	Max H. Garzon, Tit-Yee Wong, Vinhthuy T. Phan	DNA Chips for Species Identification and Biological Phylogenies.	DNA	2009	DBLP DOI BibTeX RDF	DNA codeword design, noncrosshybridizing oligonucleotide bases, genomic signatures, DNA chips, 16S rRNA tree of life, phylogenetic analysis
1	Paolo Bottoni, Anna Labella, Florin Manea, Victor Mitrana, José M. Sempere	Filter Position in Networks of Evolutionary Processors Does Not Matter: A Direct Proof.	DNA	2009	DBLP DOI BibTeX RDF
1	David Doty, Matthew J. Patitz	A Domain-Specific Language for Programming in the Tile Assembly Model.	DNA	2009	DBLP DOI BibTeX RDF
1	Yoko Sakai, Yoriko Mawatari, Kiyonari Yamasaki, Ko-ichiroh Shohda, Akira Suyama	Construction of AND Gate for RTRACS with the Capacity of Extension to NAND Gate.	DNA	2009	DBLP DOI BibTeX RDF	molecular computer, logic gate
1	Georg Seelig, David Soloveichik	Time-Complexity of Multilayered DNA Strand Displacement Circuits.	DNA	2009	DBLP DOI BibTeX RDF
1	M. Leigh Fanning, Joanne Macdonald, Darko Stefanovic	Advancing the Deoxyribozyme-Based Logic Gate Design Process.	DNA	2009	DBLP DOI BibTeX RDF
1	Ya Meng, Navin Kashyap	The Effect of Malformed Tiles on Tile Assemblies within kTAM.	DNA	2009	DBLP DOI BibTeX RDF
1	Sven Rahmann, Tobias Marschall, Frank Behler, Oliver Kramer	Modeling evolutionary fitness for DNA motif discovery.	GECCO	2009	DBLP DOI BibTeX RDF	ea, evolutionary algorithms, local search, evolution strategies, computational biology, dna, motif discovery, transcription factor, es
1	Jie Lv, Yan Zhang, Yunfeng Qi, Hongbo Liu, Jiang Zhu, Jianzhong Su, Ruijie Zhang	ChIP-seq Data Plays an Important Role in a Cytosine-Based DNA Methylation Prediction Model.	FSKD	2009	DBLP DOI BibTeX RDF	tissue-specific, model, DNA, methylation
1	Maik Hadorn, Peter Eggenberger Hotz	Multivesicular Assemblies as Real-World Testbeds for Embryogenic Evolutionary Systems.	ACAL	2009	DBLP DOI BibTeX RDF	Embryogenic evolution, real-world testbed, vesicles, hard sphere colloids, DNA, programmability, self-assembly
1	Max H. Garzon, Hao Yan (eds.)	DNA Computing, 13th International Meeting on DNA Computing, DNA13, Memphis, TN, USA, June 4-8, 2007, Revised Selected Papers	DNA	2008	DBLP BibTeX RDF
1	Xingguo Liang, Hidenori Nishioka, Nobutaka Takenaka, Hiroyuki Asanuma	Construction of Photon-Fueled DNA Nanomachines by Tethering Azobenzenes as Engines.	DNA	2008	DBLP DOI BibTeX RDF	DNA nanomachine, azobenzene, photoregulation, hybridization
1	Florent Becker, Eric Rémila, Nicolas Schabanel	Time Optimal Self-assembly for 2D and 3D Shapes: The Case of Squares and Cubes.	DNA	2008	DBLP DOI BibTeX RDF	Time Optimal Construction, 2D and 3D Discrete Geometry, Tilings, Self-assembling
1	Fumiaki Tanaka, Takashi Tsuda, Masami Hagiya	Towards DNA Comparator: The Machine That Compares DNA Concentrations.	DNA	2008	DBLP DOI BibTeX RDF
1	Sean Williams, Kyle Lund, Chenxiang Lin, Peter Wonka, Stuart Lindsay, Hao Yan	Tiamat: A Three-Dimensional Editing Tool for Complex DNA Structures.	DNA	2008	DBLP DOI BibTeX RDF	Structural DNA nanotechnology, DNA tile, 3D DNA structure display, DNA sequence design
1	Lulu Qian, Erik Winfree	A Simple DNA Gate Motif for Synthesizing Large-Scale Circuits.	DNA	2008	DBLP DOI BibTeX RDF
1	Matthew J. Patitz, Scott M. Summers	Self-assembly of Discrete Self-similar Fractals.	DNA	2008	DBLP DOI BibTeX RDF
1	Yusuke Nakagawa, Katsuyuki Yugi, Kenji Tsuge, Mitsuhiro Itaya, Hiroshi Yanagawa, Yasubumi Sakakibara	Operon Structure Optimization by Random Self-assembly.	DNA	2008	DBLP DOI BibTeX RDF
1	Stanislav Angelov, Sanjeev Khanna, Mirkó Visontai	Robust Self-assembly of Graphs.	DNA	2008	DBLP DOI BibTeX RDF
1	David Soloveichik, Georg Seelig, Erik Winfree	DNA as a Universal Substrate for Chemical Kinetics.	DNA	2008	DBLP DOI BibTeX RDF
1	Ken Komiya, Masayuki Yamamura, John A. Rose	Experimental Validation of Signal Dependent Operation in Whiplash PCR.	DNA	2008	DBLP DOI BibTeX RDF
1	Oscar H. Ibarra, Andrei Paun, Alfonso Rodríguez-Patón	Sequentiality Induced by Spike Number in SNP Systems.	DNA	2008	DBLP DOI BibTeX RDF
1	Chris Luhrs	Polyomino-Safe DNA Self-assembly via Block Replacement.	DNA	2008	DBLP DOI BibTeX RDF
1	Suguru Kawashimo, Yen Kaow Ng, Hirotaka Ono, Kunihiko Sadakane, Masafumi Yamashita	Speeding Up Local-Search Type Algorithms for Designing DNA Sequences under Thermodynamical Constraints.	DNA	2008	DBLP DOI BibTeX RDF	Statistical Thermodynamical Constraints, Local Search, DNA Sequence Design
1	Yuriy Brun, Dustin Reishus	Connecting the Dots: Molecular Machinery for Distributed Robotics.	DNA	2008	DBLP DOI BibTeX RDF
1	John H. Reif, Urmi Majumder	Isothermal Reactivating Whiplash PCR for Locally Programmable Molecular Computation.	DNA	2008	DBLP DOI BibTeX RDF
1	Erik Winfree	Toward molecular programming with DNA.	ASPLOS	2008	DBLP DOI BibTeX RDF	molecular programming, DNA
1	Mary V. Schorn	A unique insight into department of energy research accomplishments: a special collection.	JCDL	2008	DBLP DOI BibTeX RDF	accomplishments, achievements, aec, archaea, atomic energy commission, bubble chamber, buckyball, cancer therapy, computerized axial tomography, cosmic microwave background radiation, cyclotron, department of energy, energy research and development administration, erda, feynman diagrams, government documents, human genome, manhattan project, mri, neutron scattering, nobel prize, nuclear shell model, radioisotope thermoelectric generators, rtg, special collection, success stories, superconductivity, top quark, magnetic resonance imaging, atom, video game, research, history, discoveries, dna, science, positron emission tomography, results, cat, outcomes, solar energy, pet, economic impacts, doe
1	Dan Martin, Mohamad A. Eid, Abdulmotaleb El-Saddik	A Haptic Enabled DNA Model.	ISPAN	2008	DBLP DOI BibTeX RDF	Haptics, Distributed Virtual Environments, DNA
1	Leonardo G. Tavares, Heitor Silvério Lopes, Carlos R. Erig Lima	A Comparative Study of Machine Learning Methods for Detecting Promoters in Bacterial DNA Sequences.	ICIC	2008	DBLP DOI BibTeX RDF	Machine Learning, Bioinformatics, DNA, Data classification
1	Mahmood Akhtar, Eliathamby Ambikairajah, Julien Epps	Digital Signal Processing Techniques for Gene Finding in Eukaryotes.	ICISP	2008	DBLP DOI BibTeX RDF	signal boosting, discrete Fourier transforms, DNA, periodicity
1	Hiroyuki Sekiguchi, Ken Komiya, Daisuke Kiga, Masayuki Yamamura	A Realization of DNA Molecular Machine That Walks Autonomously by Using a Restriction Enzyme.	DNA	2007	DBLP DOI BibTeX RDF
1	Abraham Gutierrez, Luis Fernández, Fernando Arroyo, Santiago Alonso	Hardware and Software Architecture for Implementing Membrane Systems: A Case of Study to Transition P Systems.	DNA	2007	DBLP DOI BibTeX RDF	Transition P System, Software architecture, Hardware implementations, Natural Computing
1	Tetsuro Kitajima, Masahiro Takinoue, Ko-ichiroh Shohda, Akira Suyama	Design of Code Words for DNA Computers and Nanostructures with Consideration of Hybridization Kinetics.	DNA	2007	DBLP DOI BibTeX RDF
1	Matteo Cavaliere, Ömer Egecioglu, Oscar H. Ibarra, Mihai Ionescu, Gheorghe Paun, Sara Woodworth	Asynchronous Spiking Neural P Systems: Decidability and Undecidability.	DNA	2007	DBLP DOI BibTeX RDF
1	Benedek Nagy	On 5' --> 3' Sensing Watson-Crick Finite Automata.	DNA	2007	DBLP DOI BibTeX RDF
1	Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J. Burns, Qing Wu	Hardware Acceleration for Thermodynamic Constrained DNA Code Generation.	DNA	2007	DBLP DOI BibTeX RDF
1	Urmi Majumder, Thomas H. LaBean, John H. Reif	Activatable Tiles: Compact, Robust Programmable Assembly and Other Applications.	DNA	2007	DBLP DOI BibTeX RDF	DNA-assembly, error-correction, molecular computation
1	David Spetzler, Fusheng Xiong, Wayne D. Frasch	Heuristic Solution to a 10-City Asymmetric Traveling Salesman Problem Using Probabilistic DNA Computing.	DNA	2007	DBLP DOI BibTeX RDF	Ligation, Denaturing PAGE, Magnetic affinity, Traveling Salesman Problem, Hybridization, DNA computing
1	Artiom Alhazov, Ion Petre, Vladimir Rogojin	Solutions to Computational Problems Through Gene Assembly.	DNA	2007	DBLP DOI BibTeX RDF
1	Akio Nishikawa, Satsuki Yaegashi, Kazumasa Ohtake, Masami Hagiya	Multi-fueled Approach to DNA Nano-Robotics.	DNA	2007	DBLP DOI BibTeX RDF	DNA nano-robotics, multi-fueled approach, thermal fuel, pH fuel, light fuel, azobenzene, i-motif
1	Ashish Goel, Pablo Moisset de Espanés	Toward Minimum Size Self-Assembled Counters.	DNA	2007	DBLP DOI BibTeX RDF
1	Ken Komiya, Noriko Hirayama, Masayuki Yamamura	An Interface for a Computing Model Using Methylation to Allow Precise Population Control by Quantitative Monitoring.	DNA	2007	DBLP DOI BibTeX RDF
1	Clifford R. Johnson	Modeling Non-specific Binding in Gel-Based DNA Computers.	DNA	2007	DBLP DOI BibTeX RDF
1	Yuriy Brun	Constant-Size Tileset for Solving an NP-Complete Problem in Nondeterministic Linear Time.	DNA	2007	DBLP DOI BibTeX RDF
1	Atsushi Kameda, Satoshi Kashiwamura, Masahito Yamamoto, Azuma Ohuchi, Masami Hagiya	Combining Randomness and a High-Capacity DNA Memory.	DNA	2007	DBLP DOI BibTeX RDF	DNA memory, DNA ink, randomness, molecular memory
1	Marc García-Arnau, Daniel Manrique, Alfonso Rodríguez-Patón, Petr Sosík	Towards a Robust Biocomputing Solution of Intractable Problems.	DNA	2007	DBLP DOI BibTeX RDF	Incremental Strategy, DNA Computing, NP-Complete problem, Membrane Computing, Maximum Clique Problem
1	Lila Kari, Kalpana Mahalingam	Watson-Crick Conjugate and Commutative Words.	DNA	2007	DBLP DOI BibTeX RDF
1	Vincenzo Manca	Discrete Simulations of Biochemical Dynamics.	DNA	2007	DBLP DOI BibTeX RDF	Metabolism, Discrete Biological Models, P Systems
1	Koutaro Somei, Shohei Kaneda, Teruo Fujii, Satoshi Murata	Stepwise Assembly of DNA Tile on Surfaces.	DNA	2007	DBLP DOI BibTeX RDF	DNA tile, stepwise assembly, microfluidic device, self-assembly
1	Suguru Kawashimo, Hirotaka Ono, Kunihiko Sadakane, Masafumi Yamashita	Dynamic Neighborhood Searches for Thermodynamically Designing DNA Sequence.	DNA	2007	DBLP DOI BibTeX RDF	DNA Sequence Design Algorithm, Statistical Thermodynamical Constraints, Local Search