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Found 51 publication records. Showing 51 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Christophe Dessimoz, Toni Gabaldón, David S. Roos, Erik L. L. Sonnhammer, Javier Herrero |
Toward community standards in the quest for orthologs.  |
Bioinformatics  |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Andrey Alexeyenko, Thomas Schmitt, Andreas Tjärnberg, Dmitri Guala, Oliver Frings, Erik L. L. Sonnhammer |
Comparative interactomics with Funcoup 2.0. |
Nucleic Acids Research |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Marco Punta, Penny C. Coggill, Ruth Y. Eberhardt, Jaina Mistry, John G. Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman, Robert D. Finn |
The Pfam protein families database. |
Nucleic Acids Research |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Kristoffer Forslund, Isabella Pekkari, Erik L. L. Sonnhammer |
Domain architecture conservation in orthologs. |
BMC Bioinformatics |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Thomas Schmitt, David N. Messina, Fabian Schreiber, Erik L. L. Sonnhammer |
Letter to the Editor: SeqXML and OrthoXML: standards for sequence and orthology information. |
Briefings in Bioinformatics |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Kristoffer Forslund, Fabian Schreiber, Nattaphon Thanintorn, Erik L. L. Sonnhammer |
OrthoDisease: tracking disease gene orthologs across 100 species. |
Briefings in Bioinformatics |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Gabriel Östlund, Thomas Schmitt, Kristoffer Forslund, Tina Köstler, David N. Messina, Sanjit Roopra, Oliver Frings, Erik L. L. Sonnhammer |
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. |
Nucleic Acids Research |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Robert D. Finn, Jaina Mistry, John G. Tate, Penny C. Coggill, Andreas Heger, Joanne E. Pollington, O. Luke Gavin, Prasad Gunasekaran, Goran Ceric, Kristoffer Forslund, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman |
The Pfam protein families database. |
Nucleic Acids Research |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin Klammer, David N. Messina, Thomas Schmitt, Erik L. L. Sonnhammer |
MetaTM - a consensus method for transmembrane protein topology prediction. |
BMC Bioinformatics |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Kristoffer Forslund, Erik L. L. Sonnhammer |
Predicting protein function from domain content. |
Bioinformatics |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | David N. Messina, Erik L. L. Sonnhammer |
DASher: a stand-alone protein sequence client for DAS, the Distributed Annotation System. |
Bioinformatics |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Patrik Björkholm, Erik L. L. Sonnhammer |
Comparative analysis and unification of domain-domain interaction networks. |
Bioinformatics |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Kristoffer Forslund, Erik L. L. Sonnhammer |
Benchmarking homology detection procedures with low complexity filters. |
Bioinformatics |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Kristoffer Forslund, Erik L. L. Sonnhammer |
Predicting protein function from domain content. |
Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin Klammer, Sanjit Roopra, Erik L. L. Sonnhammer |
jSquid: a Java applet for graphical on-line network exploration. |
Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Kristoffer Forslund, Erik L. L. Sonnhammer |
Predicting protein function from domain content. |
Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Alistair M. Chalk, Erik L. L. Sonnhammer |
siRNA specificity searching incorporating mismatch tolerance data. |
Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Ann-Charlotte Berglund, Erik Sjölund, Gabriel Östlund, Erik L. L. Sonnhammer |
InParanoid 6: eukaryotic ortholog clusters with inparalogs. |
Nucleic Acids Research |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Robert D. Finn, John G. Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman |
The Pfam protein families database. |
Nucleic Acids Research |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Timo Lassmann, Erik L. L. Sonnhammer |
Automatic extraction of reliable regions from multiple sequence alignments. |
BMC Bioinformatics |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Volker Hollich, Erik L. L. Sonnhammer |
PfamAlyzer: domain-centric homology search. |
Bioinformatics |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer |
Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. |
Nucleic Acids Research |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Timo Lassmann, Erik L. L. Sonnhammer |
Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment. |
Nucleic Acids Research |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman |
Pfam: clans, web tools and services. |
Nucleic Acids Research |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Andrey Alexeyenko, Ivica Tamas, Gang Liu, Erik L. L. Sonnhammer |
Automatic clustering of orthologs and inparalogs shared by multiple proteomes. |
ISMB (Supplement of Bioinformatics) |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Timo Lassmann, Erik L. L. Sonnhammer |
Kalign - an accurate and fast multiple sequence alignment algorithm. |
BMC Bioinformatics |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Markus Wistrand, Erik L. L. Sonnhammer |
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER. |
BMC Bioinformatics |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Erik L. L. Sonnhammer, Volker Hollich |
Scoredist: A simple and robust protein sequence distance estimator. |
BMC Bioinformatics |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Kevin P. O'Brien, Maido Remm, Erik L. L. Sonnhammer |
Inparanoid: a comprehensive database of eukaryotic orthologs. |
Nucleic Acids Research |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Saraswathi Abhiman, Erik L. L. Sonnhammer |
FunShift: a database of function shift analysis on protein subfamilies. |
Nucleic Acids Research |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Alistair M. Chalk, Richard E. Warfinge, Patrick Georgii-Hemming, Erik L. L. Sonnhammer |
siRNAdb: a database of siRNA sequences. |
Nucleic Acids Research |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer |
An HMM posterior decoder for sequence feature prediction that includes homology information. |
ISMB (Supplement of Bioinformatics) |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Gustavo Camps-Valls, Alistair M. Chalk, Antonio J. Serrano-López, José David Martín-Guerrero, Erik L. L. Sonnhammer |
Profiled support vector machines for antisense oligonucleotide efficacy prediction. |
BMC Bioinformatics |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Sven Ekdahl, Erik L. L. Sonnhammer |
ChromoWheel: a new spin on eukaryotic chromosome visualization. |
Bioinformatics |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Alistair M. Chalk, Martin Wennerberg, Erik L. L. Sonnhammer |
Sfixem - graphical sequence feature display in Java. |
Bioinformatics |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Markus Wistrand, Erik L. L. Sonnhammer |
Transition Priors for Protein Hidden Markov Models: An Empirical Study towards Maximum Discrimination. |
Journal of Computational Biology |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy |
The Pfam protein families database. |
Nucleic Acids Research |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Christian E. V. Storm, Erik L. L. Sonnhammer |
Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. |
Bioinformatics |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Alistair M. Chalk, Erik L. L. Sonnhammer |
Computational antisense oligo prediction with a neural network model. |
Bioinformatics |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Volker Hollich, Christian E. V. Storm, Erik L. L. Sonnhammer |
OrthoGUI: graphical presentation of Orthostrapper results. |
Bioinformatics |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer |
The Pfam Protein Families Database. |
Nucleic Acids Research |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Christian E. V. Storm, Erik L. L. Sonnhammer |
NIFAS: visual analysis of domain evolution in proteins. |
Bioinformatics |
2001 |
DBLP DOI BibTeX RDF |
|
| 1 | Raf M. Podowski, Erik L. L. Sonnhammer |
MEDUSA: large scale automatic selection and visual assessment of PCR primer pairs. |
Bioinformatics |
2001 |
DBLP DOI BibTeX RDF |
|
| 1 | Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer |
The Pfam Protein Families Database. |
Nucleic Acids Research |
2000 |
DBLP DOI BibTeX RDF |
|
| 1 | Arne Elofsson, Erik L. L. Sonnhammer |
A comparison of sequence and structure protein domain families as a basis for structural genomics. |
Bioinformatics |
1999 |
DBLP DOI BibTeX RDF |
|
| 1 | Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer |
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. |
Nucleic Acids Research |
1999 |
DBLP DOI BibTeX RDF |
|
| 1 | Erik L. L. Sonnhammer, Sean R. Eddy, Ewan Birney, Alex Bateman, Richard Durbin |
Pfam: multiple sequence alignments and HMM-profiles of protein domains. |
Nucleic Acids Research |
1998 |
DBLP DOI BibTeX RDF |
|
| 1 | Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh |
A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. |
ISMB |
1998 |
DBLP BibTeX RDF |
|
| 1 | Erik L. L. Sonnhammer, Richard Durbin |
A workbench for large-scale sequence homology analysis. |
Computer Applications in the Biosciences |
1994 |
DBLP DOI BibTeX RDF |
|
| 1 | Erik L. L. Sonnhammer, Richard Durbin |
An Expert System for Processing Sequence Homology Data. |
ISMB |
1994 |
DBLP BibTeX RDF |
|
| 1 | H. J. Stoffers, Erik L. L. Sonnhammer, G. J. Blommestijn, N. J. Raat, H. V. Westerhoff |
METASIM: object-oriented modelling of cell regulation. |
Computer Applications in the Biosciences |
1992 |
DBLP DOI BibTeX RDF |
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