| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Leena Salmela, Veli Mäkinen, Niko Välimäki, Johannes Ylinen, Esko Ukkonen |
Fast scaffolding with small independent mixed integer programs.  |
Bioinformatics  |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Cinzia Pizzi, Pasi Rastas, Esko Ukkonen |
Finding Significant Matches of Position Weight Matrices in Linear Time. |
IEEE/ACM Trans. Comput. Biology Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Gregory Kucherov, Esko Ukkonen |
Editorial. |
J. Discrete Algorithms |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Jyrki Kivinen, Csaba Szepesvári, Esko Ukkonen, Thomas Zeugmann (eds.) |
Algorithmic Learning Theory - 22nd International Conference, ALT 2011, Espoo, Finland, October 5-7, 2011. Proceedings |
ALT |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Jyrki Kivinen, Csaba Szepesvári, Esko Ukkonen, Thomas Zeugmann |
Editors' Introduction. |
ALT |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Esko Ukkonen |
Geometric Point Pattern Matching in the Knuth-Morris-Pratt Way. |
J. UCS |
2010 |
DBLP BibTeX RDF |
|
| 1 | Morris Michael, François Nicolas, Esko Ukkonen |
On the complexity of finding gapped motifs. |
J. Discrete Algorithms |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Esko Ukkonen |
Maximal and minimal representations of gapped and non-gapped motifs of a string. |
Theor. Comput. Sci. |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | François Nicolas, Veli Mäkinen, Esko Ukkonen |
Efficient construction of maximal and minimal representations of motifs of a string. |
Theor. Comput. Sci. |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Janne Korhonen, Petri Martinmäki, Cinzia Pizzi, Pasi Rastas, Esko Ukkonen |
MOODS: fast search for position weight matrix matches in DNA sequences. |
Bioinformatics |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Gregory Kucherov, Esko Ukkonen (eds.) |
Combinatorial Pattern Matching, 20th Annual Symposium, CPM 2009, Lille, France, June 22-24, 2009, Proceedings |
CPM |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Esko Ukkonen |
Motif Construction from High-Throughput SELEX Data. |
ISBRA |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Esa Pitkänen, Arto Åkerlund, Ari Rantanen, Paula Jouhten, Esko Ukkonen |
ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis. |
J. Integrative Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Ari Rantanen, Juho Rousu, Paula Jouhten, Nicola Zamboni, Hannu Maaheimo, Esko Ukkonen |
An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments. |
BMC Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Cinzia Pizzi, Esko Ukkonen |
Fast profile matching algorithms - A survey. |
Theor. Comput. Sci. |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Morris Michael, François Nicolas, Esko Ukkonen |
On the complexity of finding gapped motifs |
CoRR |
2008 |
DBLP BibTeX RDF |
|
| 1 | Robert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron |
The BREW workshop series: a stimulating experience in PhD education. |
Briefings in Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Veli Mäkinen, Esko Ukkonen |
Point Pattern Matching. |
Encyclopedia of Algorithms |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Juha Kärkkäinen, Esko Ukkonen |
Multidimensional String Matching. |
Encyclopedia of Algorithms |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Esa Pitkänen, Ari Rantanen, Juho Rousu, Esko Ukkonen |
A Computational Method for Reconstructing Gapless Metabolic Networks. |
BIRD |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Samuel Kaski, Juho Rousu, Esko Ukkonen |
Probabilistic modeling and machine learning in structural and systems biology. |
BMC Bioinformatics |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Cinzia Pizzi, Pasi Rastas, Esko Ukkonen |
Fast Search Algorithms for Position Specific Scoring Matrices. |
BIRD |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Esko Ukkonen |
Structural Analysis of Gapped Motifs of a String. |
MFCS |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Pasi Rastas, Esko Ukkonen |
Haplotype Inference Via Hierarchical Genotype Parsing. |
WABI |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Hellis Tamm, Matti Nykänen, Esko Ukkonen |
On size reduction techniques for multitape automata. |
Theor. Comput. Sci. |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Ari Rantanen, Taneli Mielikäinen, Juho Rousu, Hannu Maaheimo, Esko Ukkonen |
Planning optimal measurements of isotopomer distributions for estimation of metabolic fluxes. |
Bioinformatics |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Taneli Mielikäinen, Esko Ukkonen |
The complexity of maximum matroid-greedoid intersection and weighted greedoid maximization, . |
Discrete Applied Mathematics |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Ari Rantanen, Hannu Maaheimo, Esa Pitkänen, Juho Rousu, Esko Ukkonen |
Equivalence of Metabolite Fragments and Flow Analysis of Isotopomer Distributions for Flux Estimation. |
T. Comp. Sys. Biology |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Kimmo Fredriksson, Gonzalo Navarro, Esko Ukkonen |
Sequential and indexed two-dimensional combinatorial template matching allowing rotations. |
Theor. Comput. Sci. |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Teemu Kivioja, Mikko Arvas, Markku Saloheimo, Merja Penttilä, Esko Ukkonen |
Optimization of cDNA-AFLP experiments using genomic sequence data. |
Bioinformatics |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Veli Mäkinen, Gonzalo Navarro, Esko Ukkonen |
Transposition invariant string matching. |
J. Algorithms |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Pasi Rastas, Mikko Koivisto, Heikki Mannila, Esko Ukkonen |
A Hidden Markov Technique for Haplotype Reconstruction. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Ari Rantanen, Taneli Mielikäinen, Juho Rousu, Esko Ukkonen |
Planning isotopomer measurements for estimation of metabolic fluxes. |
German Conference on Bioinformatics |
2005 |
DBLP BibTeX RDF |
|
| 1 | Esa Pitkänen, Ari Rantanen, Juho Rousu, Esko Ukkonen |
Finding Feasible Pathways in Metabolic Networks. |
Panhellenic Conference on Informatics |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Hellis Tamm, Matti Nykänen, Esko Ukkonen |
Size Reduction of Multitape Automata. |
CIAA |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Hellis Tamm, Esko Ukkonen |
Bideterministic automata and minimal representations of regular languages. |
Theor. Comput. Sci. |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Taneli Mielikäinen, Esko Ukkonen |
The Complexity of Maximum Matroid-Greedoid Intersection and Weighted Greedoid Maximization |
CoRR |
2004 |
DBLP BibTeX RDF |
|
| 1 | Taneli Mielikäinen, Janne Ravantti, Esko Ukkonen |
The Computational Complexity of Orientation Search Problems in Cryo-Electron Microscopy |
CoRR |
2004 |
DBLP BibTeX RDF |
|
| 1 | Taneli Mielikäinen, Janne Ravantti, Esko Ukkonen |
The Computational Complexity of Orientation Search in Cryo-Electron Microscopy. |
International Conference on Computational Science |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Mikko Koivisto, Pasi Rastas, Esko Ukkonen |
Recombination Systems. |
Theory Is Forever |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Mikko Koivisto, Teemu Kivioja, Heikki Mannila, Pasi Rastas, Esko Ukkonen |
Hidden Markov Modelling Techniques for Haplotype Analysis. |
ALT |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Hellis Tamm, Matti Nykänen, Esko Ukkonen |
Size Reduction of Multitape Automata. |
CIAA |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Stefan Burkhardt, Kimmo Fredriksson, Tuomas Ojamies, Janne Ravantti, Esko Ukkonen |
Local Approximate 3D Matching of Proteins in Viral Cryo-EM Density Maps. |
3DPVT |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Veli Mäkinen, Esko Ukkonen, Gonzalo Navarro |
Approximate Matching of Run-Length Compressed Strings. |
Algorithmica |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Gösta Grahne, Raul Hakli, Matti Nykänen, Hellis Tamm, Esko Ukkonen |
Design and implementation of a string database query language. |
Inf. Syst. |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Juha Kärkkäinen, Gonzalo Navarro, Esko Ukkonen |
Approximate string matching on Ziv-Lempel compressed text. |
J. Discrete Algorithms |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Esko Ukkonen, Kjell Lemström, Veli Mäkinen |
Geometric algorithms for transposition invariant content based music retrieval. |
ISMIR |
2003 |
DBLP BibTeX RDF |
|
| 1 | Kjell Lemström, Veli Mäkinen, Anna Pienimäki, M. Turkia, Esko Ukkonen |
The C-BRAHMS project. |
ISMIR |
2003 |
DBLP BibTeX RDF |
|
| 1 | Mikko Koivisto, Markus Perola, T. Varilo, W. Hennah, J. Ekelund, Margus Lukk, L. Peltonen, Esko Ukkonen, Heikki Mannila |
An MDL Method for Finding Haplotype Blocks and for Estimating the Strength of Haplotype Block Boundaries. |
Pacific Symposium on Biocomputing |
2003 |
DBLP BibTeX RDF |
|
| 1 | Veli Mäkinen, Gonzalo Navarro, Esko Ukkonen |
Algorithms for Transposition Invariant String Matching. |
STACS |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Juho Rousu, Ari Rantanen, Hannu Maaheimo, Esa Pitkänen, Katja Saarela, Esko Ukkonen |
A Method for Estimating Metabolic Fluxes from Incomplete Isotopomer Information. |
CMSB |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Esko Ukkonen, Kjell Lemström, Veli Mäkinen |
Sweepline the Music! |
Computer Science in Perspective |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Hellis Tamm, Esko Ukkonen |
Bideterministic Automata and Minimal Representations of Regular Languages. |
CIAA |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Amihood Amir, Gad M. Landau, Esko Ukkonen |
Online timestamped text indexing. |
Inf. Process. Lett. |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Matti Nykänen, Esko Ukkonen |
The Exact Path Length Problem. |
J. Algorithms |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Kimmo Palin, Esko Ukkonen, Alvis Brazma, Jaak Vilo |
Correlating gene promoters and expression in gene disruption experiments. |
ECCB |
2002 |
DBLP BibTeX RDF |
|
| 1 | Esko Ukkonen |
Finding Founder Sequences from a Set of Recombinants. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Kimmo Fredriksson, Gonzalo Navarro, Esko Ukkonen |
Optimal Exact and Fast Approximate Two Dimensional Pattern Matching Allowing Rotations. |
CPM |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Veli Mäkinen, Esko Ukkonen |
Local Similarity Based Point-Pattern Matching. |
CPM |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Teemu Kivioja, Mikko Arvas, Kari Kataja, Merja Penttilä, Hans Söderlund, Esko Ukkonen |
Assigning probes into a small number of pools separable by electrophoresis. |
ISMB |
2002 |
DBLP BibTeX RDF |
|
| 1 | Kimmo Fredriksson, Esko Ukkonen |
Faster template matching without FFT. |
ICIP |
2001 |
DBLP DOI BibTeX RDF |
|
| 1 | Taneli Mielikäinen, Esko Ukkonen |
The Complexity of Maximum Matroid-Greedoid Intersection. |
FCT |
2001 |
DBLP DOI BibTeX RDF |
|
| 1 | Veli Mäkinen, Gonzalo Navarro, Esko Ukkonen |
Approximate Matching of Run-Length Compressed Strings. |
CPM |
2001 |
DBLP BibTeX RDF |
|
| 1 | Esko Ukkonen |
Toward Complete Genome Data Mining in Computational Biology. |
SWAT |
2000 |
DBLP DOI BibTeX RDF |
|
| 1 | Kimmo Fredriksson, Gonzalo Navarro, Esko Ukkonen |
An Index for Two Dimensional String Matching Allowing Rotations. |
IFIP TCS |
2000 |
DBLP DOI BibTeX RDF |
|
| 1 | Juha Kärkkäinen, Gonzalo Navarro, Esko Ukkonen |
Approximate String Matching over Ziv-Lempel Compressed Text. |
CPM |
2000 |
DBLP DOI BibTeX RDF |
|
| 1 | Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen |
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data. |
ISMB |
2000 |
DBLP BibTeX RDF |
|
| 1 | Kimmo Fredriksson, Esko Ukkonen |
Combinatorial Methods for Approximate Pattern Matching under Rotations and Translations in 3D Arrays. (PDF / PS) |
SPIRE |
2000 |
DBLP DOI BibTeX RDF |
combinatorial methods, 3D arrays, three-dimensional pattern, three-dimensional volume, biological virus, pattern matching, translations, rotations, distance measures, voxels, incremental algorithms, minimum distance, three dimensional reconstruction, filtering algorithms, approximate pattern matching, real data |
| 1 | Gösta Grahne, Matti Nykänen, Esko Ukkonen |
Reasoning about Strings in Databases. |
J. Comput. Syst. Sci. |
1999 |
DBLP DOI BibTeX RDF |
|
| 1 | Juha Kärkkäinen, Esko Ukkonen |
Two- and Higher-Dimensional Pattern Matching in Optimal Expected Time. |
SIAM J. Comput. |
1999 |
DBLP DOI BibTeX RDF |
|
| 1 | Kimmo Fredriksson, Esko Ukkonen |
Combinatorial methods for approximate image matching under translations and rotations. |
Pattern Recognition Letters |
1999 |
DBLP DOI BibTeX RDF |
|
| 1 | Raul Hakli, Matti Nykänen, Hellis Tamm, Esko Ukkonen |
Implementing a Declarative String Query Language with String Restructuring. |
PADL |
1999 |
DBLP DOI BibTeX RDF |
|
| 1 | Matti Nykänen, Esko Ukkonen |
Finding Paths with the Right Cost. |
STACS |
1999 |
DBLP DOI BibTeX RDF |
|
| 1 | Kai Korpimies, Esko Ukkonen |
Term Frequency-Based Identification of FAQ-Articles. |
CoLIS |
1999 |
DBLP BibTeX RDF |
|
| 1 | Kimmo Fredriksson, Esko Ukkonen |
A Rotation Invariant Filter for Two-Dimensional String Matching. |
CPM |
1998 |
DBLP DOI BibTeX RDF |
|
| 1 | Kai Korpimies, Esko Ukkonen |
Searching for General Documents. |
FQAS |
1998 |
DBLP DOI BibTeX RDF |
|
| 1 | Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen |
Predicting gene regulatory elements from their expression data in the complete yeast genome. |
German Conference on Bioinformatics |
1998 |
DBLP BibTeX RDF |
|
| 1 | Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen |
Pattern Discovery in Biosequences. |
ICGI |
1998 |
DBLP DOI BibTeX RDF |
|
| 1 | Kai Korpimies, Esko Ukkonen |
Term Weighting in Query-Based Document Clustering (Extended Abstract). |
ADBIS |
1998 |
DBLP DOI BibTeX RDF |
|
| 1 | Enno Ohlebusch, Esko Ukkonen |
On the Equivalence Problem for E-Pattern Languages. |
Theor. Comput. Sci. |
1997 |
DBLP DOI BibTeX RDF |
|
| 1 | Alvis Brazma, Jaak Vilo, Esko Ukkonen, Kimmo Valtonen |
Data Mining for Regulatory Elements in Yeast Genome. |
ISMB |
1997 |
DBLP BibTeX RDF |
|
| 1 | Alvis Brazma, Jaak Vilo, Esko Ukkonen |
Finding transcription factor binding site combinations in the yeast genome. |
German Conference on Bioinformatics |
1997 |
DBLP BibTeX RDF |
|
| 1 | Petteri Jokinen, Jorma Tarhio, Esko Ukkonen |
A Comparison of Approximate String Matching Algorithms. |
Softw., Pract. Exper. |
1996 |
DBLP DOI BibTeX RDF |
|
| 1 | Enno Ohlebusch, Esko Ukkonen |
On the Equivalence Problem for E-Pattern Languages. |
MFCS |
1996 |
DBLP DOI BibTeX RDF |
|
| 1 | Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vilo |
Discovering Patterns and Subfamilies in Biosequences. |
ISMB |
1996 |
DBLP BibTeX RDF |
|
| 1 | Juha Kärkkäinen, Esko Ukkonen |
Sparse Suffix Trees. |
COCOON |
1996 |
DBLP DOI BibTeX RDF |
|
| 1 | Alvis Brazma, Esko Ukkonen, Jaak Vilo |
Discovering Unbounded Unions of Regular Pattern Languages from Positive Examples (Extended Abstract). |
ISAAC |
1996 |
DBLP DOI BibTeX RDF |
|
| 1 | Esko Ukkonen |
On-Line Construction of Suffix Trees. |
Algorithmica |
1995 |
DBLP DOI BibTeX RDF |
|
| 1 | Esko Ukkonen |
Editor's Foreword. |
Nord. J. Comput. |
1995 |
DBLP BibTeX RDF |
|
| 1 | Zvi Galil, Esko Ukkonen (eds.) |
Combinatorial Pattern Matching, 6th Annual Symposium, CPM 95, Espoo, Finland, July 5-7, 1995, Proceedings |
CPM |
1995 |
DBLP BibTeX RDF |
|
| 1 | Pekka Kilpeläinen, Heikki Mannila, Esko Ukkonen |
MDL learning of unions of simple pattern languages from positive examples. |
EuroCOLT |
1995 |
DBLP DOI BibTeX RDF |
|
| 1 | Matti Nykänen, Esko Ukkonen |
Finding Lowest Common Ancestors in Arbitrarily Directed Trees. |
Inf. Process. Lett. |
1994 |
DBLP DOI BibTeX RDF |
|
| 1 | Juha Kärkkäinen, Esko Ukkonen |
Two and Higher Dimensional Pattern Matching in Optimal Expected Time. |
SODA |
1994 |
DBLP DOI BibTeX RDF |
|
| 1 | Tapio Elomaa, Esko Ukkonen |
A Geometric Approach to Feature Selection. |
ECML |
1994 |
DBLP DOI BibTeX RDF |
|
| 1 | Jyrki Kivinen, Heikki Mannila, Esko Ukkonen, Jaak Vilo |
An ALgorithm for Learning Hierarchical Classifiers. |
ECML |
1994 |
DBLP DOI BibTeX RDF |
|
| 1 | Gösta Grahne, Matti Nykänen, Esko Ukkonen |
Reasoning about Strings in Databases. |
PODS |
1994 |
DBLP DOI BibTeX RDF |
|
| 1 | Esko Ukkonen, Derick Wood |
Approximate String Matching with Suffix Automata. |
Algorithmica |
1993 |
DBLP DOI BibTeX RDF |
|
| 1 | Jorma Tarhio, Esko Ukkonen |
Approximate Boyer-Moore String Matching. |
SIAM J. Comput. |
1993 |
DBLP DOI BibTeX RDF |
|
| 1 | Esko Ukkonen |
Approximate String-Matching over Suffix Trees. |
CPM |
1993 |
DBLP DOI BibTeX RDF |
|
| 1 | Esko Ukkonen |
Approximate String Matching with q-grams and Maximal Matches. |
Theor. Comput. Sci. |
1992 |
DBLP DOI BibTeX RDF |
|
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