Search results for "Graziano Pesole"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Paolo D'Onorio De Meo, Mattia D'Antonio, Francesca Griggio, Renato Lupi, Massimiliano Borsani, Giulio Pavesi, Tiziana Castrignanò, Graziano Pesole, Carmela Gissi	MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.	Nucleic Acids Research	2012	DBLP DOI BibTeX RDF
1	Ernesto Picardi, Mattia D'Antonio, Danilo Carrabino, Tiziana Castrignanò, Graziano Pesole	ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole	ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.	Nucleic Acids Research	2011	DBLP DOI BibTeX RDF
1	Giorgio Grillo, Antonio Turi, Flavio Licciulli, Flavio Mignone, Sabino Liuni, Sandro Banfi, Vincenzo Alessandro Gennarino, David Stephen Horner, Giulio Pavesi, Ernesto Picardi, Graziano Pesole	UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.	Nucleic Acids Research	2010	DBLP DOI BibTeX RDF
1	David Stephen Horner, Giulio Pavesi, Tiziana Castrignanò, Paolo D'Onorio De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole	Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.	Briefings in Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Vitoantonio Bevilacqua, Ernesto Picardi, Graziano Pesole, Daniele Ranieri, Vincenzo Stola, Vito Reno	New Tools for Expression Alternative Splicing Validation.	ICIC	2010	DBLP DOI BibTeX RDF
1	Ernesto Picardi, Flavio Mignone, Graziano Pesole	EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Matteo Re, Graziano Pesole, David Stephen Horner	Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Teresa Maria Creanza, David Stephen Horner, Annarita D'Addabbo, Rosalia Maglietta, Flavio Mignone, Nicola Ancona, Graziano Pesole	Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Federico Zambelli, Graziano Pesole, Giulio Pavesi	Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.	Nucleic Acids Research	2009	DBLP DOI BibTeX RDF
1	Graziano Pesole, Manuela Helmer-Citterich	Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Tiziana Castrignanò, Mattia D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, Anna Maria D'Erchia, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, A. Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole	ASPicDB: A database resource for alternative splicing analysis.	Bioinformatics	2008	DBLP DOI BibTeX RDF
1	David Stephen Horner, Walter Pirovano, Graziano Pesole	Correlated substitution analysis and the prediction of amino acid structural contacts.	Briefings in Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Paolo D'Onorio De Meo, Danilo Carrabino, Mattia D'Antonio, Annarita D'Addabbo, Sabino Liuni, Flavio Mignone, Graziano Pesole, Nicola Ancona	HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers.	CCGRID	2008	DBLP DOI BibTeX RDF	RLS classifiers, service-oriented architectures, microarray, high throughput
1	Tyler S. Alioto, Roderic Guigó, Ernesto Picardi, Graziano Pesole	GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts.	APBC	2008	DBLP BibTeX RDF
1	Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona	Selection of relevant genes in cancer diagnosis based on their prediction accuracy.	Artificial Intelligence in Medicine	2007	DBLP DOI BibTeX RDF
1	Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole	Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Elisabetta Sbisà, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Antonio Turi, Sabino Liuni, Graziano Pesole, Anna De Grassi, Mariano Francesco Caratozzolo, Anna Maria D'Erchia, Beatriz Navarro, Apollonia Tullo, Cecilia Saccone, Andreas Gisel	p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Giulio Pavesi, Federico Zambelli, Graziano Pesole	WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Rosalia Maglietta, Ada Piepoli, Domenico Catalano, Piepoli Licciulli, Massimo Carella, Sabino Liuni, Graziano Pesole, Francesco Perri, Nicola Ancona	Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data.	Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole	A high performance grid-web service framework for the identification of 'conserved sequence tags'.	Future Generation Comp. Syst.	2007	DBLP DOI BibTeX RDF
1	Nicola Ancona, Rosalia Maglietta, Ada Piepoli, Annarita D'Addabbo, R. Cotugno, M. Savino, Sabino Liuni, Massimo Carella, Graziano Pesole, Francesco Perri	On the statistical assessment of classifiers using DNA microarray data.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Tiziana Castrignanò, Paolo D'Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole	GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Giulio Pavesi, Paolo Mereghetti, Federico Zambelli, Marco Stefani, Giancarlo Mauri, Graziano Pesole	MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.	Nucleic Acids Research	2006	DBLP DOI BibTeX RDF
1	Tiziana Castrignanò, Raffaella Rizzi, Ivano Giuseppe Talamo, Paolo D'Onorio De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole	ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.	Nucleic Acids Research	2006	DBLP DOI BibTeX RDF
1	Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona	Classification error as a measure of gene relevance in cancer diagnosis.	IJCNN	2006	DBLP DOI BibTeX RDF
1	Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone	Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society.	BMC Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Nicola Ancona, Rosalia Maglietta, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole	Regularized Least Squares Cancer Classifiers from DNA microarray data.	BMC Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole	ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences.	BMC Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Angelo Boccia, Mauro Petrillo, Diego di Bernardo, Alessandro Guffanti, Flavio Mignone, Stefano Confalonieri, Lucilla Luzi, Graziano Pesole, Giovanni Paolella, Andrea Ballabio, Sandro Banfi	DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes.	Nucleic Acids Research	2005	DBLP DOI BibTeX RDF
1	Flavio Mignone, Giorgio Grillo, Flavio Licciulli, Michele Iacono, Sabino Liuni, Paul Kersey, Jorge Duarte, Cecilia Saccone, Graziano Pesole	UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.	Nucleic Acids Research	2005	DBLP DOI BibTeX RDF
1	Nicola Ancona, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole, Rosalia Maglietta	SVM and RLS Models for Cancer Classification.	Computational Intelligence	2005	DBLP BibTeX RDF
1	Flavio Mignone, David Stephen Horner, Graziano Pesole	WebVar: a resource for the rapid estimation of relative site variability from multiple sequence alignments.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Andreas Gisel, Maria Panetta, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Cecilia Saccone, Graziano Pesole	DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole	CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.	Nucleic Acids Research	2004	DBLP DOI BibTeX RDF
1	Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, Graziano Pesole	Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes.	Nucleic Acids Research	2004	DBLP DOI BibTeX RDF
1	Giulio Pavesi, Giancarlo Mauri, Graziano Pesole	An Algorithm for Finding Conserved Secondary Structure Motifs in Unaligned RNA Sequences.	J. Comput. Sci. Technol.	2004	DBLP DOI BibTeX RDF
1	Giulio Pavesi, Giancarlo Mauri, Graziano Pesole	In silico representation and discovery of transcription factor binding sites.	Briefings in Bioinformatics	2004	DBLP DOI BibTeX RDF
1	David Stephen Horner, Graziano Pesole	The estimation of relative site variability among aligned homologous protein sequences.	Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Elisabetta Sbisà, Graziano Pesole	PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences.	Nucleic Acids Research	2003	DBLP DOI BibTeX RDF
1	Cecilia Saccone, Graziano Pesole	Handbook of Comparative Genomics - Principles and Methodology.		2003	RDF
1	Paola Bonizzoni, Graziano Pesole, Raffaella Rizzi	A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence.	WABI	2003	DBLP DOI BibTeX RDF
1	Giulio Pavesi, Giancarlo Mauri, Graziano Pesole	Predicting Conserved Hairpin Motifs in Unaligned RNA Sequences.	ICTAI	2003	DBLP DOI BibTeX RDF
1	Marcella Attimonelli, Domenico Catalano, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Monica Santamaria, Graziano Pesole, Cecilia Saccone	MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002.	Nucleic Acids Research	2002	DBLP DOI BibTeX RDF
1	Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Flavio Mignone, Carmela Gissi, Cecilia Saccone	UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.	Nucleic Acids Research	2002	DBLP DOI BibTeX RDF
1	Alessandra Larizza, Wojciech Makalowski, Graziano Pesole, Cecilia Saccone	Evolutionary Dynamics of Mammalian MRNA Untranslated Regions by Comparative Analysis of Orthologous Human, Artiodactyl and Rodent Gene Pairs.	Computers & Chemistry	2002	DBLP DOI BibTeX RDF
1	Giulio Pavesi, Giancarlo Mauri, Graziano Pesole	Methods for Pattern Discovery in Unaligned Biological Sequences.	Briefings in Bioinformatics	2001	DBLP BibTeX RDF
1	Giulio Pavesi, Giancarlo Mauri, Graziano Pesole	An algorithm for finding signals of unknown length in DNA sequences.	ISMB (Supplement of Bioinformatics)	2001	DBLP BibTeX RDF
1	Graziano Pesole, Sabino Liuni, Mark D'Souza	PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance.	Bioinformatics	2000	DBLP DOI BibTeX RDF
1	Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone	UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs.	Nucleic Acids Research	2000	DBLP DOI BibTeX RDF
1	Graziano Pesole, Carmela Gissi, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marcella Attimonelli, Cecilia Saccone	MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins.	Nucleic Acids Research	2000	DBLP DOI BibTeX RDF
1	Graziano Pesole, Giorgio Grillo, Alessandra Larizza, Sabino Liuni	The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis.	Briefings in Bioinformatics	2000	DBLP DOI BibTeX RDF
1	Graziano Pesole, Sabino Liuni, Giorgio Grillo, Matilde Ippedico, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone	UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs.	Nucleic Acids Research	1999	DBLP DOI BibTeX RDF
1	Graziano Pesole, Sabino Liuni, Giorgio Grillo, Cecilia Saccone	UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs.	Nucleic Acids Research	1998	DBLP DOI BibTeX RDF
1	Giorgio Grillo, Marcella Attimonelli, Sabino Liuni, Graziano Pesole	CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases.	Computer Applications in the Biosciences	1996	DBLP DOI BibTeX RDF
1	Graziano Pesole, Giorgio Grillo, Sabino Liuni	Databases of MRNA Untranslated Regions for Metazoa.	Computers & Chemistry	1996	DBLP DOI BibTeX RDF
1	Sabino Liuni, N. Prunella, Graziano Pesole, Tiziana D'Orazio, Ettore Stella, Arcangelo Distante	SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences.	Computer Applications in the Biosciences	1993	DBLP DOI BibTeX RDF
1	N. Prunella, Sabino Liuni, Marcella Attimonelli, Graziano Pesole	FASTPAT: a fast and efficient algorithm for string searching in DNA sequences.	Computer Applications in the Biosciences	1993	DBLP DOI BibTeX RDF

Publications of "Graziano Pesole" ( http://dblp.L3S.de/Authors/Graziano_Pesole )