| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Fei Guo, Shuai Cheng Li, Lusheng Wang |
P-Binder: A System for the Protein-Protein Binding Sites Identification.  |
ISBRA  |
2012 |
DBLP DOI BibTeX RDF |
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| 1 | Leonidas G. Bleris, Ion I. Mandoiu, Russell Schwartz, Jianxin Wang (eds.) |
Bioinformatics Research and Applications - 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Pawel Górecki, Oliver Eulenstein |
A Robinson-Foulds Measure to Compare Unrooted Trees with Rooted Trees. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Matteo Re, Giorgio Valentini |
Large Scale Ranking and Repositioning of Drugs with Respect to DrugBank Therapeutic Categories. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Yann Christinat, Bernard M. E. Moret |
A Transcript Perspective on Evolution. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Daniele Catanzaro, Martine Labbé, Bjarni V. Halldórsson |
A Mixed Integer Programming Model for the Parsimonious Loss of Heterozygosity Problem. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Si Li, Kwok Pui Choi, Taoyang Wu, Louxin Zhang |
Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Victor Missirian, Isabelle Henry, Luca Comai, Vladimir Filkov |
POPE: Pipeline of Parentally-Biased Expression. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Tim Wylie, Binhai Zhu |
A Polynomial Time Solution for Protein Chain Pair Simplification under the Discrete Fréchet Distance. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Aïda Ouangraoua, Krister M. Swenson, Anne Bergeron |
On the Comparison of Sets of Alternative Transcripts. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Ralph W. Crosby, Tiffani L. Williams |
A Fast Algorithm for Computing the Quartet Distance for Large Sets of Evolutionary Trees. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Jingfen Zhang, Dong Xu |
Protein Structure Prediction and Clustering Using MUFOLD. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Isra Al-Turaiki, Ghada Badr, Hassan Mathkour |
Trie-based Apriori Motif Discovery Approach. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Cynthia Gibas |
Analytics Approaches for the Era of 10, 000* Genomes *and Counting. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Juntao Li, Kwok Pui Choi, R. Krishna Murthy Karuturi |
Iterative Piecewise Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Bhaskar DasGupta |
Models and Algorithmic Tools for Computational Processes in Cellular Biology: Recent Developments and Future Directions - (Invited Keynote Talk). |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Peter Damaschke, Leonid Molokov |
Error Propagation in Sparse Linear Systems with Peptide-Protein Incidence Matrices. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Xi Chen, Chen Wang, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke, Jianhua Xuan |
Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Ayshwarya Subramanian, Stanley Shackney, Russell Schwartz |
Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Hyun Jung Park, Luay Nakhleh |
MURPAR: A Fast Heuristic for Inferring Parsimonious Phylogenetic Networks from Multiple Gene Trees. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | André Wehe, J. Gordon Burleigh, Oliver Eulenstein |
Algorithms for Knowledge-Enhanced Supertrees. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Akshay Deepak, Jianrong Dong, David Fernández-Baca |
Identifying Rogue Taxa through Reduced Consensus: NP-Hardness and Exact Algorithms. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Jiri Novák, David Hoksza, Jakub Lokoc, Tomás Skopal |
On Optimizing the Non-metric Similarity Search in Tandem Mass Spectra by Clustering. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Pawel Górecki, J. Gordon Burleigh, Oliver Eulenstein |
GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Michael Q. Zhang |
Computational Modeling of Mammalian Promoters - (Invited Keynote Talk). |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Debarka Sengupta, Ujjwal Maulik, Sanghamitra Bandyopadhyay |
Score Based Aggregation of microRNA Target Orderings. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Laurent Bulteau, Minghui Jiang |
Inapproximability of (1, 2)-Exemplar Distance. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Bonnie Kirkpatrick |
Non-identifiable Pedigrees and a Bayesian Solution. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Lars Wienbrandt, Daniel Siebert, Manfred Schimmler |
Improvement of BLASTp on the FPGA-Based High-Performance Computer RIVYERA. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Ambuj K. Singh |
Modeling Complex Diseases Using Discriminative Network Fragments - (Invited Keynote Talk). |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Junjie Yu, Henry Chi-Ming Leung, Siu-Ming Yiu, Yong Zhang, Francis Y. L. Chin, Nathan Hobbs, Amy Y. X. Wang |
Phylogenetic Tree Reconstruction with Protein Linkage. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Rukhsana Yeasmin, Steven Skiena |
Designing RNA Secondary Structures in Coding Regions. |
ISBRA |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Ruchi Chaudhary, J. Gordon Burleigh, Oliver Eulenstein |
Algorithms for Rapid Error Correction for the Gene Duplication Problem. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | David Sankoff |
OMG! Orthologs for Multiple Genomes - Competing Formulations - (Keynote Talk). |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Yu-Cheng Liu, Po-I. Chiu, Hsuan-Cheng Huang, Vincent S. Tseng |
Prediction of Essential Genes by Mining Gene Ontology Semantics. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano |
Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Vadim Mozhayskiy, Ilias Tagkopoulos |
In Silico Evolution of Multi-scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Pingzhao Hu, Shelley B. Bull, Hui Jiang |
Gene Network Modules-Based Liner Discriminant Analysis of Microarray Gene Expression Data. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Ján Manuch, Murray Patterson, Arvind Gupta |
Towards a Characterisation of the Generalised Cladistic Character Compatibility Problem for Non-branching Character Trees. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston |
A Systematic Comparison of Genome Scale Clustering Algorithms - (Extended Abstract). |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Jonathan Q. Jiang |
Multi-label Correlated Semi-supervised Learning for Protein Function Prediction. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Yan Fu, Rong Pan, Qiang Yang, Wen Gao |
Query-Adaptive Ranking with Support Vector Machines for Protein Homology Prediction. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Han Wang, John Fazekas, Matthew Booth, Qi Liu, Dongsheng Che |
An Integrative Approach for Genomic Island Prediction in Prokaryotic Genomes. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Wen-Chieh Chang 0002, Sudheer Vakati, Roland Krause, Oliver Eulenstein |
Mining Biological Interaction Networks Using Weighted Quasi-Bicliques. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Liping Wei |
Genetic and Pharmacogenetic Studies of Neuropsychiatric Disorders: Increasingly Critical Roles of Bioinformatics Research and Applications - (Keynote Talk). |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Harris T. Lin, J. Gordon Burleigh, Oliver Eulenstein |
The Deep Coalescence Consensus Tree Problem is Pareto on Clusters. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiaohua Wan, Fa Zhang, Qi Chu, Zhiyong Liu |
High-Performance Blob-Based Iterative Reconstruction of Electron Tomography on Multi-GPUs. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Ghada Badr, Marcel Turcotte |
Component-Based Matching for Multiple Interacting RNA Sequences. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Chunfang Zheng, David Sankoff |
Gene Order in Rosid Phylogeny, Inferred from Pairwise Syntenies among Extant Genomes. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Ruchi Chaudhary, J. Gordon Burleigh, David Fernández-Baca |
Fast Local Search for Unrooted Robinson-Foulds Supertrees. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Yu Lin, Vaibhav Rajan, Bernard M. E. Moret |
A Metric for Phylogenetic Trees Based on Matching. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Krister M. Swenson, Eric Chen, Nicholas D. Pattengale, David Sankoff |
The Kernel of Maximum Agreement Subtrees. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Eric P. Xing |
Genome-Phenome Association Analysis of Complex Diseases a Structured Sparse Regression Approach - (Keynote Talk). |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Jianer Chen, Jianxin Wang, Alexander Zelikovsky (eds.) |
Bioinformatics Research and Applications - 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Bin Fu, Louxin Zhang |
A Polynomial Algebra Method for Computing Exemplar Breakpoint Distance. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Bernard M. E. Moret |
Phylogenetic Analysis of Whole Genomes - (Keynote Talk). |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Yi-Tsung Tang, Hung-Yu Kao |
TransDomain: A Transitive Domain-Based Method in Protein-Protein Interaction Prediction. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Huan Wang, Min Li, Jianxin Wang, Yi Pan |
A New Method for Identifying Essential Proteins Based on Edge Clustering Coefficient. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Luqman Hodgkinson, Richard M. Karp |
Algorithms to Detect Multiprotein Modularity Conserved during Evolution. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Pavol Jancura, Eleftheria Mavridou, Beatriz Pontes, Elena Marchiori |
Describing the Orthology Signal in a PPI Network at a Functional, Complex Level. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | John D. Eblen, Charles A. Phillips, Gary L. Rogers, Michael A. Langston |
The Maximum Clique Enumeration Problem: Algorithms, Applications and Implementations. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Marius Nicolae, Ion I. Mandoiu |
Accurate Estimation of Gene Expression Levels from DGE Sequencing Data. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Pawel Górecki, Oliver Eulenstein |
A Linear Time Algorithm for Error-Corrected Reconciliation of Unrooted Gene Trees. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Russell Schwartz |
Phylogenetics of Heterogeneous Samples - (Keynote Talk). |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Andrea Szabóová, Ondrej Kuzelka, Sergio Morales E., Filip Zelezný, Jakub Tolar |
Prediction of DNA-Binding Propensity of Proteins by the Ball-Histogram Method. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Jian-Yi Yang, Xin Chen |
A Consensus Approach to Predicting Protein Contact Map via Logistic Regression. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Chaojun Li, Jieyue He, Baoliu Ye, Wei Zhong |
A Novel Core-Attachment Based Greedy Search Method for Mining Functional Modules in Protein Interaction Networks. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | David Hoksza, Daniel Svozil |
SETTER - RNA SEcondary sTructure-based TERtiary Structure Similarity Algorithm. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Hui Li, Lauren Scott, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge, William M. Southerland |
Rapid and Accurate Generation of Peptide Sequence Tags with a Graph Search Approach. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Jun Ren, Jianxin Wang, Min Li, Huan Wang, Binbin Liu |
Prediction of Essential Proteins by Integration of PPI Network Topology and Protein Complexes Information. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Felipe Lessa, Daniele Martins Neto, Kátia Guimarães, Marcelo M. Brigido, Maria Emilia Telles Walter |
Regene: Automatic Construction of a Multiple Component Dirichlet Mixture Priors Covariance Model to Identify Non-coding RNA. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiuwei Zhang, Bernard M. E. Moret |
ProPhyC: A Probabilistic Phylogenetic Model for Refining Regulatory Networks. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Jirí Kléma, Matej Holec, Filip Zelezný, Jakub Tolar |
Comparative Evaluation of Set-Level Techniques in Microarray Classification. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Fei Guo, Lusheng Wang |
Computing the Protein Binding Sites. |
ISBRA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Noah Daniels, Anoop Kumar, Lenore Cowen, Matthew Menke |
Touring Protein Space with Matt. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Juntao Li, Lei Zhu, Majid Eshaghi, Jianhua Liu, Karuturi R. Krishna Murthy |
Deciphering Transcription Factor Binding Patterns from Genome-Wide High Density ChIP-chip Tiling Array Data. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Carlos H. A. Higa, Vitor H. P. Louzada, Ronaldo Fumio Hashimoto |
Analysis of Gene Interactions Using Restricted Boolean Networks and Time-Series Data. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Laxmi Parida |
Combinatorics in Recombinational Population Genomics. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo |
"Master-Slave" Biological Network Alignment. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Mark B. Gerstein |
Human Genome Annotation. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Ivan Ovcharenko |
Structure of Proximal and Distant Regulatory Elements in the Human Genome. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Yufeng Wu, Jiayin Wang |
Fast Computation of the Exact Hybridization Number of Two Phylogenetic Trees. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Piotr Berman |
Successes and Failures of Elegant Algorithms in Computational Biology. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Mark Borodovsky, Johann Peter Gogarten, Teresa M. Przytycka, Sanguthevar Rajasekaran (eds.) |
Bioinformatics Research and Applications, 6th International Symposium, ISBRA 2010, Storrs, CT, USA, May 23-26, 2010. Proceedings |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Liqing Zhang, Layne T. Watson |
The Expected Fitness Cost of a Mutation Fixation under the One-Dimensional Fisher Model. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Michael L. Blinov, Oliver Ruebenacker, James C. Schaff, Ion I. Moraru |
Modeling without Borders: Creating and Annotating VCell Models Using the Web. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Yosi Shibberu, Allen Holder, Kyla Lutz |
Fast Protein Structure Alignment. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | John Wiedenhoeft, Roland Krause, Oliver Eulenstein |
Inferring Evolutionary Scenarios for Protein Domain Compositions. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Suzanne Matthews, Seung-Jin Sul, Tiffani L. Williams |
A Novel Approach for Compressing Phylogenetic Trees. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin Ehler, Vinodh N. Rajapakse, Barry Zeeberg, Brian P. Brooks, Jacob D. Brown, Wojciech Czaja, Robert F. Bonner |
Analysis of Temporal-spatial Co-variation within Gene Expression Microarray Data in an Organogenesis Model. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Ming-Chi Tsai, Guy E. Blelloch, R. Ravi, Russell Schwartz |
A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Jay W. Kim, Rahul Singh |
Residue Contexts: Non-sequential Protein Structure Alignment Using Structural and Biochemical Features. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Jun Ren, Jianxin Wang, Jianer Chen, Min Li, Gang Chen |
An Agglomerate Algorithm for Mining Overlapping and Hierarchical Functional Modules in Protein Interaction Networks. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Rob Gysel, Dan Gusfield |
Extensions and Improvements to the Chordal Graph Approach to the Multi-state Perfect Phylogeny Problem. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Duong Dai Doan, Patricia A. Evans |
Fixed-Parameter Algorithm for General Pedigrees with a Single Pair of Sites. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicholas D. Pattengale, Krister M. Swenson, Bernard M. E. Moret |
Uncovering Hidden Phylogenetic Consensus. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Catalin C. Barbacioru |
Tracing the Early Cell Divisions of Mouse Embryos by Single Cell RNA-Seq. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Mona Singh |
Predicting and Analyzing Cellular Networks. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Bo Liu, Mihai Pop |
Identifying Differentially Abundant Metabolic Pathways in Metagenomic Datasets. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Min Li, Jianxin Wang, Huan Wang, Yi Pan |
Essential Proteins Discovery from Weighted Protein Interaction Networks. |
ISBRA |
2010 |
DBLP DOI BibTeX RDF |
|
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