| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Ivo L. Hofacker, Christian M. Reidys, Peter F. Stadler |
Symmetric circular matchings and RNA folding.  |
Discrete Mathematics  |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Hakim Tafer, Fabian Amman, Florian Eggenhofer, Peter F. Stadler, Ivo L. Hofacker |
Fast accessibility-based prediction of RNA-RNA interactions. |
Bioinformatics |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Christian Höner zu Siederdissen, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker |
A folding algorithm for extended RNA secondary structures. |
Bioinformatics [ISMB/ECCB] |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Jan Gorodkin, Ivo L. Hofacker |
From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs. |
PLoS Computational Biology |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Andreas R. Gruber, Jörg Fallmann, Franz Kratochvill, Pavel Kovarik, Ivo L. Hofacker |
AREsite: a database for the comprehensive investigation of AU-rich elements. |
Nucleic Acids Research |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Florian Eggenhofer, Hakim Tafer, Peter F. Stadler, Ivo L. Hofacker |
RNApredator: fast accessibility-based prediction of sRNA targets. |
Nucleic Acids Research |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Ulrike Mückstein, Germán G. Leparc, Alexandra Posekany, Ivo L. Hofacker, David P. Kreil |
Hybridization thermodynamics of NimbleGen Microarrays. |
BMC Bioinformatics |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Christian Höner zu Siederdissen, Ivo L. Hofacker |
Discriminatory power of RNA family models. |
Bioinformatics |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Hakim Tafer, Stephanie Kehr, Jana Hertel, Ivo L. Hofacker, Peter F. Stadler |
RNAsnoop: efficient target prediction for H/ACA snoRNAs. |
Bioinformatics |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Andreas R. Gruber, Sven Findeiß, Stefan Washietl, Ivo L. Hofacker, Peter F. Stadler |
RNAz 2.0: Improved Noncoding RNA Detection. |
Pacific Symposium on Biocomputing |
2010 |
DBLP BibTeX RDF |
|
| 1 | Rolf Backofen, Hamidreza Chitsaz, Ivo L. Hofacker, Süleyman Cenk Sahinalp, Peter F. Stadler |
Session Introduction. |
Pacific Symposium on Biocomputing |
2010 |
DBLP BibTeX RDF |
|
| 1 | Andreas R. Gruber, Stephan H. F. Bernhart, You Zhou, Ivo L. Hofacker |
RNALfoldz: Efficient Prediction of Thermodynamically Stable, Local Secondary Structures. |
GCB |
2010 |
DBLP BibTeX RDF |
|
| 1 | Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker |
2D Projections of RNA Folding Landscapes. |
GCB |
2009 |
DBLP BibTeX RDF |
|
| 1 | Andreas R. Gruber, Stephan H. F. Bernhart, Ivo L. Hofacker, Stefan Washietl |
Strategies for measuring evolutionary conservation of RNA secondary structures. |
BMC Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Stephan H. F. Bernhart, Ivo L. Hofacker, Sebastian Will, Andreas R. Gruber, Peter F. Stadler |
RNAalifold: improved consensus structure prediction for RNA alignments. |
BMC Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Jana Hertel, Ivo L. Hofacker, Peter F. Stadler |
SnoReport: computational identification of snoRNAs with unknown targets. |
Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Hakim Tafer, Ivo L. Hofacker |
RNAplex: a fast tool for RNA-RNA interaction search. |
Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Radka Svobodová Vareková, Ivan Bradác, Martin Plchút, Michal Skrdla, Michael Wacenovsky, Helmuth Mahr, Georg Mayer, Herbert Tanner, Hermann Brugger, Josef Withalm, Peter Lederer, Heinrich Huber, Gerhard Gierlinger, Ronald Graf, Hakim Tafer, Ivo L. Hofacker, Peter Schuster, Martin Polcík |
www.rnaworkbench.com: A new program for analyzing RNA interference. |
Computer Methods and Programs in Biomedicine |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Andreas R. Gruber, Ronny Lorenz, Stephan H. F. Bernhart, Richard Neuböck, Ivo L. Hofacker |
The Vienna RNA Websuite. |
Nucleic Acids Research |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Ulrike Mückstein, Hakim Tafer, Stephan H. F. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel, Peter F. Stadler, Ivo L. Hofacker |
Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics. |
BIRD |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Sebastian Will, Kristin Reiche, Ivo L. Hofacker, Peter F. Stadler, Rolf Backofen |
Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering. |
PLoS Computational Biology |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Andreas R. Gruber, Richard Neuböck, Ivo L. Hofacker, Stefan Washietl |
The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures. |
Nucleic Acids Research |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Christoph Flamm, Ivo L. Hofacker, Bärbel M. R. Stadler, Peter F. Stadler |
Saddles and Barrier in Landscapes of Generalized Search Operators. |
FOGA |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Christian V. Forst, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler |
Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation. |
BMC Bioinformatics |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker |
Thermodynamics of RNA-RNA binding. |
Bioinformatics |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Ivo L. Hofacker, Peter F. Stadler |
Memory efficient folding algorithms for circular RNA secondary structures. |
Bioinformatics |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Stephan H. F. Bernhart, Ivo L. Hofacker, Peter F. Stadler |
Local RNA base pairing probabilities in large sequences. |
Bioinformatics |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Stephan H. F. Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker |
Partition function and base pairing probabilities of RNA heterodimers. |
Algorithms for Molecular Biology |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Paul Wei-Che Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li-Zen Lin, Ann-Ping Tsou, Ching-Ping Tseng, Peter F. Stadler, Stefan Washietl, Ivo L. Hofacker |
miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. |
Nucleic Acids Research |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Christian Heine 0002, Gerik Scheuermann, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler |
Visualization of Barrier Tree Sequences. |
IEEE Trans. Vis. Comput. Graph. |
2006 |
DBLP DOI BibTeX RDF |
RNA folding, energy landscape, barrier tree, Graph drawing, fitness landscape, dynamic graph |
| 1 | Axel Mosig, Ivo L. Hofacker, Peter F. Stadler |
Comparative Analysis of Cyclic Sequences: Viroids and other Small Circular RNAs. |
German Conference on Bioinformatics |
2006 |
DBLP BibTeX RDF |
|
| 1 | Roman R. Stocsits, Ivo L. Hofacker, Claudia Fried, Peter F. Stadler |
Multiple sequence alignments of partially coding nucleic acid sequences. |
BMC Bioinformatics |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Ivo L. Hofacker, Peter F. Stadler |
Memory Efficient Folding Algorithms for Circular RNA Secondary Structures. |
German Conference on Bioinformatics |
2005 |
DBLP BibTeX RDF |
|
| 1 | Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker |
Thermodynamics of RNA-RNA Binding. |
German Conference on Bioinformatics |
2005 |
DBLP BibTeX RDF |
|
| 1 | Ivo L. Hofacker, Stephan H. F. Bernhart, Peter F. Stadler |
Alignment of RNA base pairing probability matrices. |
Bioinformatics |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Ivo L. Hofacker, Barbara Priwitzer, Peter F. Stadler |
Prediction of locally stable RNA secondary structures for genome-wide surveys. |
Bioinformatics |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Ivo L. Hofacker, Peter F. Stadler, Roman R. Stocsits |
Conserved RNA secondary structures in viral genomes: a survey. |
Bioinformatics |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Christina Witwer, Ivo L. Hofacker, Peter F. Stadler |
Prediction of Consensus RNA Secondary Structures Including Pseudoknots. |
IEEE/ACM Trans. Comput. Biology Bioinform. |
2004 |
DBLP DOI BibTeX RDF |
covariance, RNA secondary structure, pseudoknots |
| 1 | Ivo L. Hofacker, Peter F. Stadler |
The Partition Function Variant of Sankoff's Algorithm. |
International Conference on Computational Science |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | C. Thurner, Ivo L. Hofacker, Peter F. Stadler |
Conserved RNA Pseudoknots. |
German Conference on Bioinformatics |
2004 |
DBLP BibTeX RDF |
|
| 1 | Ivo L. Hofacker |
Vienna RNA secondary structure server. |
Nucleic Acids Research |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Ivo L. Hofacker, Peter F. Stadler, Roman R. Stocsits |
Conserved RNA secondary structures in viral genomes: A survey. |
German Conference on Bioinformatics |
2003 |
DBLP BibTeX RDF |
|
| 1 | Ulrike Mückstein, Ivo L. Hofacker, Peter F. Stadler |
Stochastic pairwise alignments. |
ECCB |
2002 |
DBLP BibTeX RDF |
|
| 1 | Martin Fekete, Ivo L. Hofacker, Peter F. Stadler |
Prediction of RNA Base Pairing Probabilities on Massively Parallel Computers. |
Journal of Computational Biology |
2000 |
DBLP BibTeX RDF |
|
| 1 | Ivo L. Hofacker, Peter F. Stadler |
Automatic Detection of Conserved Base Pairing Patterns in RNA Virus Genomes. |
Computers & Chemistry |
1999 |
DBLP DOI BibTeX RDF |
|
| 1 | G. Weberndorfer, Ivo L. Hofacker, Peter F. Stadler |
An efficient potential for protein sequence design. |
German Conference on Bioinformatics |
1999 |
DBLP BibTeX RDF |
|
| 1 | Roman R. Stocsits, Ivo L. Hofacker, Peter F. Stadler |
Conserved secondary structures in hepatitis B virus DNA. |
German Conference on Bioinformatics |
1999 |
DBLP BibTeX RDF |
|
| 1 | Ivo L. Hofacker, Peter Schuster, Peter F. Stadler |
Combinatorics of RNA Secondary Structures. |
Discrete Applied Mathematics |
1998 |
DBLP DOI BibTeX RDF |
|
| 1 | Jan Cupal, Ivo L. Hofacker, Peter F. Stadler |
Dynamic Programming Algorithm for the Density of States of RNA Secondary Structures. |
German Conference on Bioinformatics |
1996 |
DBLP BibTeX RDF |
|
| 1 | Ivo L. Hofacker, Martijn A. Huynen, Peter F. Stadler, Paul E. Stolorz |
Knowledge Discovery in RNA Sequence Families of HIV Using Scalable Computers. |
KDD |
1996 |
DBLP BibTeX RDF |
|
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