Search results for "Jeremy D. Buhler"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Yanni Sun, Jeremy Buhler, Cheng Yuan	Designing Filters for Fast-Known NcRNA Identification.	IEEE/ACM Trans. Comput. Biology Bioinform.	2012	DBLP DOI BibTeX RDF
1	Hongtao Sun, Jeremy D. Buhler	PhyLAT: a phylogenetic local alignment tool.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Jeremy D. Buhler, Kunal Agrawal, Peng Li, Roger D. Chamberlain	Efficient deadlock avoidance for streaming computation with filtering.	PPOPP	2012	DBLP DOI BibTeX RDF
1	Lin Ma, Roger D. Chamberlain, Jeremy D. Buhler, Mark A. Franklin	Bloom Filter Performance on Graphics Engines.	ICPP	2011	DBLP DOI BibTeX RDF
1	Joseph M. Lancaster, E. F. Berkley Shands, Jeremy D. Buhler, Roger D. Chamberlain	TimeTrial: A low-impact performance profiler for streaming data applications.	ASAP	2011	DBLP DOI BibTeX RDF
1	Roger D. Chamberlain, Mark A. Franklin, Eric J. Tyson, James H. Buckley, Jeremy Buhler, Greg Galloway, Saurabh Gayen, Michael J. Hall, E. F. Berkley Shands, Naveen Singla	Auto-Pipe: Streaming Applications on Architecturally Diverse Systems.	IEEE Computer	2010	DBLP DOI BibTeX RDF	Auto-Pipe, Software engineering, Processor architectures, Multicore processors, Computer systems organization
1	Roger D. Chamberlain, Jeremy Buhler, Mark A. Franklin, James H. Buckley	Application-guided tool development for architecturally diverse computation.	SAC	2010	DBLP DOI BibTeX RDF	application development tools, approximate text search, computational astrophysics, encryption, computational biology, Monte Carlo simulation, computational finance
1	Peng Li, Kunal Agrawal, Jeremy Buhler, Roger D. Chamberlain, Joseph M. Lancaster	Deadlock-avoidance for streaming applications with split-join structure: Two case studies.	ASAP	2010	DBLP DOI BibTeX RDF
1	Peng Li, Kunal Agrawal, Jeremy Buhler, Roger D. Chamberlain	Deadlock avoidance for streaming computations with filtering.	SPAA	2010	DBLP DOI BibTeX RDF	architecturally diverse platforms, dataflow, data filtering
1	Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhler, Michela Taufer	Accelerating HMMER on GPUs by implementing hybrid data and task parallelism.	BCB	2010	DBLP DOI BibTeX RDF
1	Arpith C. Jacob, Jeremy D. Buhler, Roger D. Chamberlain	Design of throughput-optimized arrays from recurrence abstractions.	ASAP	2010	DBLP DOI BibTeX RDF
1	Arpith C. Jacob, Jeremy D. Buhler, Roger D. Chamberlain	Rapid RNA Folding: Analysis and Acceleration of the Zuker Recurrence.	FCCM	2010	DBLP DOI BibTeX RDF
1	Arpith C. Jacob, Jeremy D. Buhler, Roger D. Chamberlain	Design space exploration of throughput-optimized arrays from recurrence abstractions (abstract only).	FPGA	2010	DBLP DOI BibTeX RDF	fpga, dynamic programming, systolic array, throughput optimization, recurrences
1	Joseph M. Lancaster, Jeremy Buhler, Roger D. Chamberlain	Acceleration of ungapped extension in Mercury BLAST.	Microprocessors and Microsystems - Embedded Hardware Design	2009	DBLP DOI BibTeX RDF
1	Yanni Sun, Jeremy Buhler	Designing Patterns and Profiles for Faster HMM Search.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	bioinformatics databases, sequence similarity search, hidden Markov models, Biology and genetics
1	Arpith C. Jacob, Jeremy D. Buhler, Roger D. Chamberlain	Optimal runtime reconfiguration strategies for systolic arrays.	FPL	2009	DBLP DOI BibTeX RDF
1	Joseph M. Lancaster, Jeremy D. Buhler, Roger D. Chamberlain	Efficient runtime performance monitoring of FPGA-based applications.	SoCC	2009	DBLP DOI BibTeX RDF
1	Arpith C. Jacob, Joseph M. Lancaster, Jeremy Buhler, Brandon Harris, Roger D. Chamberlain	Mercury BLASTP: Accelerating Protein Sequence Alignment.	TRETS	2008	DBLP DOI BibTeX RDF	Bioinformatics, biological sequence alignment
1	Arpith C. Jacob, Jeremy Buhler, Roger D. Chamberlain	Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs.	ASAP	2008	DBLP DOI BibTeX RDF
1	Yanni Sun, Jeremy Buhler	Designing patterns for profile HMM search.	Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Praveen Krishnamurthy, Jeremy Buhler, Roger D. Chamberlain, Mark A. Franklin, Kwame Gyang, Arpith C. Jacob, Joseph M. Lancaster	Biosequence Similarity Search on the Mercury System.	VLSI Signal Processing	2007	DBLP DOI BibTeX RDF	comparative annotation, biosequence, DNA sequencing
1	Brandon Harris, Arpith C. Jacob, Joseph M. Lancaster, Jeremy Buhler, Roger D. Chamberlain	A Banded Smith-Waterman FPGA Accelerator for Mercury BLASTP.	FPL	2007	DBLP DOI BibTeX RDF
1	Roger D. Chamberlain, Mark A. Franklin, Eric J. Tyson, Jeremy Buhler, Saurabh Gayen, Patrick Crowley, James H. Buckley	Application development on hybrid systems.	SC	2007	DBLP DOI BibTeX RDF	gamma ray astronomy, performance modeling, hybrid systems, hardware/software co-design
1	Arpith C. Jacob, Joseph M. Lancaster, Jeremy Buhler, Roger D. Chamberlain	FPGA-accelerated seed generation in Mercury BLASTP.	FCCM	2007	DBLP DOI BibTeX RDF
1	Arpith C. Jacob, Joseph M. Lancaster, Jeremy D. Buhler, Roger D. Chamberlain	Preliminary results in accelerating profile HMM search on FPGAs.	IPDPS	2007	DBLP DOI BibTeX RDF
1	Yanni Sun, Jeremy Buhler	Choosing the best heuristic for seeded alignment of DNA sequences.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Arpith C. Jacob, Brandon Harris, Jeremy Buhler, Roger D. Chamberlain, Young H. Cho	Scalable Softcore Vector Processor for Biosequence Applications.	FCCM	2006	DBLP DOI BibTeX RDF
1	Rahul P. Maddimsetty, Jeremy Buhler, Roger D. Chamberlain, Mark A. Franklin, Brandon Harris	Accelerator design for protein sequence HMM search.	ICS	2006	DBLP DOI BibTeX RDF	protein motif, hidden Markov model, HMMER
1	Can Alkan, Emre Karakoç, Süleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler	RNA Secondary Structure Prediction Via Energy Density Minimization.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Yanni Sun, Jeremy Buhler	Designing Multiple Simultaneous Seeds for DNA Similarity Search.	Journal of Computational Biology	2005	DBLP DOI BibTeX RDF
1	Jeremy Buhler, Uri Keich, Yanni Sun	Designing seeds for similarity search in genomic DNA.	J. Comput. Syst. Sci.	2005	DBLP DOI BibTeX RDF
1	Ben Wun, Jeremy Buhler, Patrick Crowley	Exploiting Coarse-Grained Parallelism to Accelerate Protein Motif Finding with a Network Processor.	IEEE PACT	2005	DBLP DOI BibTeX RDF
1	Benjamin P. Westover, Jeremy D. Buhler, Justin L. Sonnenburg, Jeffrey I. Gordon	Operon prediction without a training set.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Jeremy Buhler, Richard Souvenir, Weixiong Zhang, Rob Mitra	Design of a High-Throughput Assay for Alternative Splicing Using Polymerase Colonies.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
1	Praveen Krishnamurthy, Jeremy Buhler, Roger D. Chamberlain, Mark A. Franklin, Kwame Gyang, Joseph M. Lancaster	Biosequence Similarity Search on the Mercury System.	ASAP	2004	DBLP DOI BibTeX RDF
1	Jeremy Buhler, Rachel Nordgren	Toward a Phylogenetically Aware Algorithm for Fast DNA Similarity Search.	Comparative Genomics	2004	DBLP DOI BibTeX RDF
1	Yanni Sun, Jeremy Buhler	Designing multiple simultaneous seeds for DNA similarity search.	RECOMB	2004	DBLP DOI BibTeX RDF	Mandala, biosequence comparison, genomic DNA, seed design, similarity search
1	Jeremy Buhler	Provably Sensitive Indexing Strategies for Biosequence Similarity Search.	Journal of Computational Biology	2003	DBLP DOI BibTeX RDF
1	Richard Souvenir, Jeremy Buhler, Gary D. Stormo, Weixiong Zhang	Selecting Degenerate Multiplex PCR Primers.	WABI	2003	DBLP DOI BibTeX RDF
1	Eran Halperin, Jeremy Buhler, Richard M. Karp, Robert Krauthgamer, Ben Westover	Detecting protein sequence conservation via metric embeddings.	ISMB (Supplement of Bioinformatics)	2003	DBLP BibTeX RDF
1	Jeremy Buhler, Uri Keich, Yanni Sun	Designing seeds for similarity search in genomic DNA.	RECOMB	2003	DBLP DOI BibTeX RDF	Mandala, biosequence comparison, genomic DNA, seed design, similarity search
1	Jeremy Buhler, Martin Tompa	Finding Motifs Using Random Projections.	Journal of Computational Biology	2002	DBLP BibTeX RDF
1	Jeremy Buhler	Provably sensitive Indexing strategies for biosequence similarity search.	RECOMB	2002	DBLP DOI BibTeX RDF
1	Jeremy Buhler	Efficient large-scale sequence comparison by locality-sensitive hashing.	Bioinformatics	2001	DBLP DOI BibTeX RDF
1	Jeremy Buhler, Martin Tompa	Finding motifs using random projections.	RECOMB	2001	DBLP DOI BibTeX RDF

Publications of Jeremy D. Buhler Jeremy Buhler ( http://dblp.L3S.de/Authors/Jeremy_D._Buhler )