Search results for "Knut Reinert"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Anne-Katrin Emde, Marcel H. Schulz, David Weese, Ruping Sun, Martin Vingron, Vera M. Kalscheuer, Stefan A. Haas, Knut Reinert	Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Sandro Andreotti, Gunnar W. Klau, Knut Reinert	Antilope - A Lagrangian Relaxation Approach to the de novo Peptide Sequencing Problem.	IEEE/ACM Trans. Comput. Biology Bioinform.	2012	DBLP DOI BibTeX RDF
1	Chris Bauer, Frank Kleinjung, Celia J. Smith, Mark W. Towers, Ali Tiss, Alexandra Chadt, Tanja Dreja, Dieter Beule, Hadi Al-Hasani, Knut Reinert, Johannes Schuchhardt, Rainer Cramer	Biomarker Discovery and Redundancy Reduction towards Classification using a Multi-factorial MALDI-TOF MS T2DM Mouse Model Dataset.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Manuel Holtgrewe, Anne-Katrin Emde, David Weese, Knut Reinert	A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Sandro Andreotti, Gunnar W. Klau, Knut Reinert	Antilope - A Lagrangian Relaxation Approach to the de novo Peptide Sequencing Problem	CoRR	2011	DBLP BibTeX RDF
1	Anne-Katrin Emde, Marcel Grunert, David Weese, Knut Reinert, Silke R. Sperling	MicroRazerS: rapid alignment of small RNA reads.	Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Knut Reinert	Oops I Did it Again... Sustainability in Sequence Analysis via Software Libraries.	ERCIM News	2010	DBLP BibTeX RDF
1	Tobias Rausch, Sergey Koren, Gennady Denisov, David Weese, Anne-Katrin Emde, Andreas Döring, Knut Reinert	A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Ole Schulz-Trieglaff, Egidijus Machtejevas, Knut Reinert, Hartmut Schlüter, Joachim Thiemann, Klaus Unger	Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments.	BioData Mining	2009	DBLP DOI BibTeX RDF
1	Raphael André Bauer, Kristian Rother, Peter Moor, Knut Reinert, Thomas Steinke, Janusz M. Bujnicki, Robert Preissner	Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors.	Algorithms	2009	DBLP DOI BibTeX RDF
1	Ernst Althaus, Gunnar W. Klau, Oliver Kohlbacher, Hans-Peter Lenhof, Knut Reinert	Integer Linear Programming in Computational Biology.	Efficient Algorithms	2009	DBLP DOI BibTeX RDF
1	Tobias Rausch, Anne-Katrin Emde, Knut Reinert	Robust consensus computation.	BMC Bioinformatics	2008	DBLP BibTeX RDF
1	Ole Schulz-Trieglaff, Nico Pfeifer, Clemens Gröpl, Oliver Kohlbacher, Knut Reinert	LC-MSsim - a simulation software for liquid chromatography mass spectrometry data.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher	OpenMS - An open-source software framework for mass spectrometry.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Andreas Döring, David Weese, Tobias Rausch, Knut Reinert	SeqAn An efficient, generic C++ library for sequence analysis.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Leinenbach, Andreas Hildebrandt, Christian G. Huber, Knut Reinert	Computational Quantification of Peptides from LC-MS Data.	Journal of Computational Biology	2008	DBLP DOI BibTeX RDF
1	Markus Bauer, Gunnar W. Klau, Knut Reinert	An Exact Mathematical Programming Approach to Multiple RNA Sequence-Structure Alignment.	Algorithmic Operations Research	2008	DBLP BibTeX RDF
1	Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Döring, Cédric Notredame, Knut Reinert	Segment-based multiple sequence alignment.	ECCB	2008	DBLP DOI BibTeX RDF
1	Marcel H. Schulz, David Weese, Tobias Rausch, Andreas Döring, Knut Reinert, Martin Vingron	Fast and Adaptive Variable Order Markov Chain Construction.	WABI	2008	DBLP DOI BibTeX RDF
1	Markus Bauer, Gunnar W. Klau, Knut Reinert	Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Oliver Kohlbacher, Knut Reinert, Clemens Gröpl, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Marc Sturm	TOPP - the OpenMS proteomics pipeline.	Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert	Integer linear programming approaches for non-unique probe selection.	Discrete Applied Mathematics	2007	DBLP DOI BibTeX RDF
1	Eva Lange, Clemens Gröpl, Ole Schulz-Trieglaff, Andreas Leinenbach, Christian G. Huber, Knut Reinert	A geometric approach for the alignment of liquid chromatography - mass spectrometry data.	ISMB/ECCB (Supplement of Bioinformatics)	2007	DBLP DOI BibTeX RDF
1	Knut Reinert, Markus Bauer, Andreas Döring, Gunnar W. Klau, Aaron L. Halpern	A General Paradigm for Fast, Adaptive Clustering of Biological Sequences.	German Conference on Bioinformatics	2007	DBLP BibTeX RDF
1	Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert	A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data.	RECOMB	2007	DBLP DOI BibTeX RDF
1	Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert	A branch-and-cut algorithm for multiple sequence alignment.	Math. Program.	2006	DBLP DOI BibTeX RDF
1	Eva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt	High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques.	Pacific Symposium on Biocomputing	2006	DBLP BibTeX RDF
1	Christian G. Huber, Oliver Kohlbacher, Knut Reinert (eds.)	Computational Proteomics, 20.-25. November 2005	Computational Proteomics	2006	DBLP BibTeX RDF
1	Witold E. Wolski, Maciej Lalowski, Peter Martus, Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert	Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process.	BMC Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Witold E. Wolski, Maciej Lalowski, Peter Jungblut, Knut Reinert	Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants.	BMC Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Christian G. Huber, Oliver Kohlbacher, Knut Reinert	05471 Abstract Collection - Computational Proteomics.	Computational Proteomics	2005	DBLP BibTeX RDF
1	Christian G. Huber, Oliver Kohlbacher, Knut Reinert	05471 Executive Summary - Computational Proteomics.	Computational Proteomics	2005	DBLP BibTeX RDF
1	Nathanaël Delmotte, Bettina M. Mayr, Andreas Leinenbach, Knut Reinert, Oliver Kohlbacher, Christoph L. Klein, Christian G. Huber	Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins.	Computational Proteomics	2005	DBLP BibTeX RDF
1	Markus Bauer, Gunnar W. Klau, Knut Reinert	Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization.	CompLife	2005	DBLP DOI BibTeX RDF
1	Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber, Bettina M. Mayr, Christoph L. Klein	Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples.	CompLife	2005	DBLP DOI BibTeX RDF
1	Markus Bauer, Gunnar W. Klau, Knut Reinert	Multiple Structural RNA Alignment with Lagrangian Relaxation.	WABI	2005	DBLP DOI BibTeX RDF
1	Knut Reinert	A polyhedral approach to sequence alignment problems.		2004	RDF
1	Oliver Kohlbacher, Knut Reinert	Differenzielle Proteomanalyse - Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges).	it - Information Technology	2004	DBLP BibTeX RDF
1	Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert	Optimal robust non-unique probe selection using Integer Linear Programming.	ISMB/ECCB (Supplement of Bioinformatics)	2004	DBLP DOI BibTeX RDF
1	Daniel H. Huson, Knut Reinert, Eugene W. Myers	The greedy path-merging algorithm for contig scaffolding.	J. ACM	2002	DBLP DOI BibTeX RDF	Genome assembly
1	Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert	Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics.	ECCB	2002	DBLP BibTeX RDF
1	Aaron L. Halpern, Daniel H. Huson, Knut Reinert	Segment Match Refinement and Applications.	WABI	2002	DBLP DOI BibTeX RDF
1	Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail	Visualization challenges for a new cyberpharmaceutical computing paradigm.	IEEE Symposium on Parallel and Large-Data Visualization and Graphics	2001	DBLP BibTeX RDF
1	Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton	Comparing Assemblies Using Fragments and Mate-Pairs.	WABI	2001	DBLP DOI BibTeX RDF
1	Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers	Design of a compartmentalized shotgun assembler for the human genome.	ISMB (Supplement of Bioinformatics)	2001	DBLP BibTeX RDF
1	Daniel H. Huson, Knut Reinert, Eugene W. Myers	The greedy path-merging algorithm for sequence assembly.	RECOMB	2001	DBLP DOI BibTeX RDF
1	Knut Reinert, Jens Stoye, Torsten Will	An iterative method for faster sum-of-pairs multiple sequence alignment.	Bioinformatics	2000	DBLP DOI BibTeX RDF
1	Martin Lermen, Knut Reinert	The Practical Use of the A* Algorithm for Exact Multiple Sequence Alignment.	Journal of Computational Biology	2000	DBLP BibTeX RDF
1	John D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron	A polyhedral approach to sequence alignment problems.	Discrete Applied Mathematics	2000	DBLP DOI BibTeX RDF
1	Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert	An exact solution for the segment-to-segment multiple sequence alignment problem.	Bioinformatics	1999	DBLP DOI BibTeX RDF
1	Knut Reinert, Jens Stoye, Torsten Will	Combining Divide-and-Conquer, the A*-Algorithm, and Successive Realignment Approaches to Speed Multiple Sequence Alignment.	German Conference on Bioinformatics	1999	DBLP BibTeX RDF
1	Hans-Peter Lenhof, Knut Reinert, Martin Vingron	A Polyhedral Approach to RNA Sequence Structure Alignment.	Journal of Computational Biology	1998	DBLP BibTeX RDF
1	Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern	An exact solution for the Segment-to-Segment multiple sequence alignment problem.	German Conference on Bioinformatics	1998	DBLP BibTeX RDF
1	Hans-Peter Lenhof, Knut Reinert, Martin Vingron	A polyhedral approach to RNA sequence structure alignment.	RECOMB	1998	DBLP DOI BibTeX RDF
1	Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kurt Mehlhorn, John D. Kececioglu	A branch-and-cut algorithm for multiple sequence alignment.	RECOMB	1997	DBLP DOI BibTeX RDF
1	Phillip G. Bradford, Knut Reinert	Lower Bounds for Row Minima Searching (Extended Abstract).	ICALP	1996	DBLP DOI BibTeX RDF

Publications of "Knut Reinert" ( http://dblp.L3S.de/Authors/Knut_Reinert )