| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Md. Ashfaquzzaman Khan, Martin C. Herbordt |
Parallel discrete molecular dynamics simulation with speculation and in-order commitment.  |
J. Comput. Physics  |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Matt Chiu, Md. Ashfaquzzaman Khan, Martin C. Herbordt |
Efficient Calculation of Pairwise Nonbonded Forces. |
FCCM |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Bharat Sukhwani, Martin C. Herbordt |
FPGA acceleration of rigid-molecule docking codes. |
IET Computers & Digital Techniques |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Matt Chiu, Martin C. Herbordt |
Molecular Dynamics Simulations on High-Performance Reconfigurable Computing Systems. |
TRETS |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Bharat Sukhwani, Martin C. Herbordt |
Fast binding site mapping using GPUs and CUDA. |
IPDPS Workshops |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Atabak Mahram, Martin C. Herbordt |
Fast and accurate NCBI BLASTP: acceleration with multiphase FPGA-based prefiltering. |
ICS |
2010 |
DBLP DOI BibTeX RDF |
FPGA-based coprocessors, high performance reconfigurable computing, bioinformatics, biological sequence alignment |
| 1 | Jin H. Park, Yunfei Qiu, Martin C. Herbordt |
CAAD BLASTn: Accelerated NCBI BLASTn with FPGA prefiltering. |
ISCAS |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Martin C. Herbordt |
Elements of High-Performance Reconfigurable Computing. |
Advances in Computers |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Matt Chiu, Martin C. Herbordt |
Efficient particle-pair filtering for acceleration of molecular dynamics simulation. |
FPL |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Bharat Sukhwani, Martin C. Herbordt |
FPGA-based acceleration of CHARMM-potential minimization. |
SC-HPRCTA |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Bharat Sukhwani, Martin C. Herbordt |
GPU acceleration of a production molecular docking code. |
GPGPU |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Herbordt, Md. Ashfaquzzaman Khan, Tony Dean |
Parallel Discrete Event Simulation of Molecular Dynamics Through Event-Based Decomposition. |
ASAP |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Jin H. Park, Yunfei Qiu, Martin C. Herbordt |
CAAD BLASTP: NCBI BLASTP Accelerated with FPGA-Based Accelerated Pre-Filtering. |
FCCM |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Herbordt, Yongfeng Gu, Tom Van Court, Josh Model, Bharat Sukhwani, Matt Chiu |
Computing Models for FPGA-Based Accelerators. |
Computing in Science and Engineering |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Yongfeng Gu, Tom Van Court, Martin C. Herbordt |
Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations. |
Parallel Computing |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Yongfeng Gu, Tom Van Court, Martin C. Herbordt |
Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations. |
Parallel Computing |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Bharat Sukhwani, Martin C. Herbordt |
Acceleration of a production rigid molecule docking code. |
FPL |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Herbordt, Francois Kosie, Josh Model |
An Efficient O(1) Priority Queue for Large FPGA-Based Discrete Event Simulations of Molecular Dynamics. |
FCCM |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Martin C. Herbordt |
Families of FPGA-based accelerators for approximate string matching. |
Microprocessors and Microsystems |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Herbordt, Josh Model, Bharat Sukhwani, Yongfeng Gu, Tom Van Court |
Single pass streaming BLAST on FPGAs. |
Parallel Computing |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Herbordt, Tom Van Court, Yongfeng Gu, Bharat Sukhwani, Al Conti, Josh Model, Douglas DiSabello |
Achieving High Performance with FPGA-Based Computing. |
IEEE Computer |
2007 |
DBLP DOI BibTeX RDF |
FPGAs, High-performance computing, reconfigurable computing |
| 1 | Josh Model, Martin C. Herbordt |
Discrete Event Simulation of Molecular Dynamics with Configurable Logic. |
FPL |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Yongfeng Gu, Martin C. Herbordt |
FPGA-Based Multigrid Computation for Molecular Dynamics Simulations. |
FCCM |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Yongfeng Gu, Vikas Mundada, Martin C. Herbordt |
Rigid Molecule Docking: FPGA Reconfiguration for Alternative Force Laws. |
EURASIP J. Adv. Sig. Proc. |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Martin C. Herbordt |
Sizing of Processing Arrays for FPGA-Based Computation. |
FPL |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Martin C. Herbordt |
Application-Specific Memory Interleaving for FPGA-Based Grid Computations: A General Design Technique. |
FPL |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Yongfeng Gu, Tom Van Court, Martin C. Herbordt |
Improved Interpolation and System Integration for FPGA-Based Molecular Dynamics Simulations. |
FPL |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Martin C. Herbordt |
Application-Specific Memory Interleaving Enables High Performance in FPGA-based Grid Computations. |
FCCM |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Yongfeng Gu, Tom Van Court, Martin C. Herbordt |
Integrating FPGA Acceleration into the Protomol Molecular Dynamics Code: Preliminary Report. |
FCCM |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Herbordt, Josh Model, Yongfeng Gu, Bharat Sukhwani, Tom Van Court |
Single Pass, BLAST-Like, Approximate String Matching on FPGAs. |
FCCM |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Martin C. Herbordt |
LAMP: A Tool Suite for Families of FPGA-Based Application Accelerators. |
FPL |
2005 |
DBLP BibTeX RDF |
|
| 1 | Yongfeng Gu, Tom Van Court, Martin C. Herbordt |
Accelerating Molecular Dynamics Simulations With Configurable Circuits. |
FPL |
2005 |
DBLP BibTeX RDF |
|
| 1 | Yongfeng Gu, Tom Van Court, Douglas DiSabello, Martin C. Herbordt |
Preliminary Report: FPGA Acceleration of Molecular Dynamics Computations. |
FCCM |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Yongfeng Gu, Martin C. Herbordt |
Three-Dimensional Template Correlation: Object Recognition in 3D Voxel Data. |
CAMP |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Martin C. Herbordt, Richard J. Barton |
Case study of a functional genomics application for an FPGA-based coprocessor. |
Microprocessors and Microsystems |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Herbordt, Jade Cravy, Honghai Zhang |
Array control for high-performance SIMD systems. |
J. Parallel Distrib. Comput. |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Albert A. Conti, Tom Van Court, Martin C. Herbordt |
Processing Repetitive Sequence Structures with Mismatches at Streaming Rate. |
FPL |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Yongfeng Gu, Martin C. Herbordt |
FPGA Acceleration of Rigid Molecule Interactions. |
FPL |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Martin C. Herbordt |
Families of FPGA-Based Algorithms for Approximate String Matching. |
ASAP |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Yongfeng Gu, Martin C. Herbordt |
FPGA Acceleration of Rigid Molecule Interactions. |
FCCM |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Tom Van Court, Martin C. Herbordt, Richard J. Barton |
Case Study of a Functional Genomics Application. |
FPL |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Herbordt, Jade Cravy, Renoy Sam, Owais Kidwai, Calvin Lin |
A System for Evaluating Performance and Cost of SIMD Array Designs. |
J. Parallel Distrib. Comput. |
2000 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Herbordt, Honghai Zhang, Calvin Lin, Hong Rao, Jade Cravy |
Control for High-Speed PE Arrays. |
ASAP |
2000 |
DBLP DOI BibTeX RDF |
Application Specific Array Processors, Array Control Unit, Parallel Architecture, SIMD processing |
| 1 | Martin C. Herbordt, Jade Cravy, Honghai Zhang, Calvin Lin, Hong Rao |
An Array Control Unit for High Performance SIMD Arrays. |
CAMP |
2000 |
DBLP DOI BibTeX RDF |
array control unit, high performance SIMD arrays, array utilization, SIMD arrays, parallel processing |
| 1 | Bojana Obrenic, Martin C. Herbordt, Arnold L. Rosenberg, Charles C. Weems |
Using Emulations to Enhance the Performance of Parallel Architectures. |
IEEE Trans. Parallel Distrib. Syst. |
1999 |
DBLP DOI BibTeX RDF |
parallel algorithms, Parallel architecture, multiprocessor interconnection |
| 1 | Martin C. Herbordt, Owais Kidwai, Charles C. Weems |
Preprototyping SIMD Coprocessors Using Virtual Machine Emulation and Trace Compilation. |
SIGMETRICS |
1997 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Herbordt, Charles C. Weems |
Enpassant: An Environment for Evaluating Massively Parallel Array Architectures for Spatially Mapped Applications. |
IJPRAI |
1995 |
DBLP BibTeX RDF |
|
| 1 | Martin C. Herbordt, Charles C. Weems |
Experimental Analysis of Some SIMD Array Memory Hierarchies. |
ICPP |
1995 |
DBLP BibTeX RDF |
|
| 1 | Martin C. Herbordt, Charles C. Weems |
An empirical study of datapath, memory hierarchy, and network in SIMD array architectures. (PDF / PS) |
ICCD |
1995 |
DBLP DOI BibTeX RDF |
SIMD array architectures, SIMD arrays, ENPASSANT, router network, local transfers, performance evaluation, performance, parallel architectures, broadcast, virtual machines, memory hierarchy, reduction, associativity, memory architecture, cache storage, simulation environment, datapath, block size |
| 1 | Martin C. Herbordt, James C. Corbett, Charles C. Weems, John Spalding |
Practical Algorithms for Online Routing on Fixed and Reconfigurable Meshes. |
J. Parallel Distrib. Comput. |
1994 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Herbordt, Charles C. Weems, Michael J. Scudder |
Nonuniform region processing on SIMD arrays using the coterie network. |
Mach. Vis. Appl. |
1992 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Herbordt, Charles C. Weems |
Multi-associativity: A Framework for Solving Multiple Non-uniform Problem Instances Simultaneously on SIMD Arrays. |
ICPP |
1991 |
DBLP BibTeX RDF |
|
| 1 | Martin C. Herbordt, Charles C. Weems, James C. Corbett |
Message-Passing Algorithms for a SIMD Torus with Coteries. |
SPAA |
1990 |
DBLP DOI BibTeX RDF |
|
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