Search results for "Metabolic Pathway"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
2	Myungha Jang, Arang Rhie, Jiyoung Whang, Sanduk Yang, Hyun Seok Park	A statistical analysis of relation degree of compound pair on online biological pathway databases.	ICUIMC	2009	DBLP DOI BibTeX RDF	drawing algorithm, edge crossing, relation degree, XML, parsing, metabolic pathway
2	Alex H. Leo, Gang Sun	Cellular Computational Model of Biology.	World Congress on Engineering (Selected Papers)	2008	DBLP DOI BibTeX RDF	Cellular Computational model, Lac operon, E. coli, metabolic pathway
2	Deepak Perumal, Chu Sing Lim, Meena K. Sakharkar	In silico Identification of Putative Drug Targets in Pseudomonas aeruginosa Through Metabolic Pathway Analysis.	PRIB	2007	DBLP DOI BibTeX RDF	Pseudomonas aeruginosa, Homo sapiens, Comparative microbial genomics, KEGG, kdsA, kdsB, waaG, lpxC, Potential drug targets, MODELLER, Homology
2	Takeshi Arikuma, Sumi Yoshikawa, Kentaro Watanabe, Akihiko Konagaya	Ontology-Driven Hypothetic Assertion (OHA) for Drug Interaction Prediction.	IMSCCS	2007	DBLP DOI BibTeX RDF	Drug Interaction, Pharmacokinetics, Web Ontology Language (OWL), Biomedical Ontology, Metabolic Pathway
2	Liliana Félix, Francesc Rosselló, Gabriel Valiente	Reconstructing Metabolic Pathways by Bidirectional Chemical Search.	CMSB	2007	DBLP DOI BibTeX RDF	biochemical reaction, metabolic pathway, Artificial chemistry
2	Karsten Ehrig, Reiko Heckel, Georgios Lajios	Molecular Analysis of Metabolic Pathway with Graph Transformation.	ICGT	2006	DBLP DOI BibTeX RDF
2	Tomás Arredondo, Michael Seeger, Lioubov Dombrovskaia, Jorge Avarias, Felipe Calderón, Diego Candel, Freddy Muñoz, Valeria Latorre-Reyes, Loreine Agulló, Macarena Córdova, Luis Gómez	Bioinformatics Integration Framework for Metabolic Pathway Data-Mining.	IEA/AIE	2006	DBLP DOI BibTeX RDF
1	Tomás Arredondo, Diego Candel, Mauricio U. Leiva, Lioubov Dombrovskaia, Loreine Agulló, Michael Seeger	Inference system using softcomputing and mixed data applied in metabolic pathway datamining.	IJDMB	2012	DBLP DOI BibTeX RDF
1	Ilir Jusufi, Christian Klukas, Andreas Kerren, Falk Schreiber	Guiding the interactive exploration of metabolic pathway interconnections.	Information Visualization	2012	DBLP DOI BibTeX RDF
1	Ismael Navas Delgado, María Jesús García-Godoy, José Francisco Aldana Montes	Metabolic Pathway Data and Application Integration.	PAAMS (Workshops)	2012	DBLP DOI BibTeX RDF
1	Stefan Schuster, Luis F. de Figueiredo, Anja Schroeter, Christoph Kaleta	Combining Metabolic Pathway Analysis with Evolutionary Game Theory. Explaining the occurrence of low-yield pathways by an analytic optimization approach.	Biosystems	2011	DBLP DOI BibTeX RDF
1	Christoph Kaleta, Luis F. de Figueiredo, Ines Heiland, Steffen Klamt, Stefan Schuster	Special issue: Integration of OMICs datasets into Metabolic Pathway Analysis.	Biosystems	2011	DBLP DOI BibTeX RDF
1	Nozomu Sakurai, Takeshi Ara, Yoshiyuki Ogata, Ryosuke Sano, Takashi Ohno, Kenjiro Sugiyama, Atsushi Hiruta, Kiyoshi Yamazaki, Kentaro Yano, Koh Aoki, Asaph Aharoni, Kazuki Hamada, Koji Yokoyama, Shingo Kawamura, Hirofumi Otsuka, Toshiaki Tokimatsu, Minoru Kanehisa, Hideyuki Suzuki, Kazuki Saito, Daisuke Shibata	KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data.	Nucleic Acids Research	2011	DBLP DOI BibTeX RDF
1	Tomás Vidal Arredondo, Wladimir O. Ormazábal, Diego Candel, Werner Creixell	Meta-learning Based Optimization of Metabolic Pathway Data-Mining Inference System.	IEA/AIE	2011	DBLP DOI BibTeX RDF
1	Chang F. Quo, May D. Wang	Biological Interpretation of Model-Reference Adaptive Control in a Mass Action Kinetics Metabolic Pathway Model.	BIBM	2011	DBLP DOI BibTeX RDF
1	Laura Astola, Marian Groenenboom, Victoria Gomez Roldan, Fred van Eeuwijk, Robert D. Hall, Arnaud Bovy, Jaap Molenaar	Metabolic Pathway Inference from Time Series Data: A Non Iterative Approach.	PRIB	2011	DBLP DOI BibTeX RDF
1	Joseph M. Dale, Liviu Popescu, Peter D. Karp	Machine learning methods for metabolic pathway prediction.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Patrizio Arrigo, Pasquale Paolo Cardo, Alberto Izzotti	Proteomic-based screening of miRNAs metabolic pathway targeting.	I. J. Computational Biology and Drug Design	2010	DBLP DOI BibTeX RDF
1	Raphael B. M. Aggio, Katya Ruggiero, Silas Granato Villas-Bôas	Pathway Activity Profiling (PAPi): from the metabolite profile to the metabolic pathway activity.	Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Aristoteles Goes-Neto, Marcelo V. C. Diniz, Leonardo B. L. Santos, Suani T. R. Pinho, José G. V. Miranda, Thierry Petit Lobão, Ernesto P. Borges, Charbel Niño El-Hani, Roberto F. S. Andrade	Comparative protein analysis of the chitin metabolic pathway in extant organisms: A complex network approach.	Biosystems	2010	DBLP DOI BibTeX RDF
1	Martin Bartl, Pu Li, Stefan Schuster	Modelling the optimal timing in metabolic pathway activation - Use of Pontryagin's Maximum Principle and role of the Golden section.	Biosystems	2010	DBLP DOI BibTeX RDF
1	Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen	Drug target identification in sphingolipid metabolism by computational systems biology tools: Metabolic control analysis and metabolic pathway analysis.	Journal of Biomedical Informatics	2010	DBLP DOI BibTeX RDF
1	Yuki Moriya, Daichi Shigemizu, Masahiro Hattori, Toshiaki Tokimatsu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa	PathPred: an enzyme-catalyzed metabolic pathway prediction server.	Nucleic Acids Research	2010	DBLP DOI BibTeX RDF
1	Myungha Jang, Arang Rhie, Hyun Seok Park	Toward automatically drawn metabolic pathway atlas with peripheral node abstraction algorithm.	BIBM	2010	DBLP DOI BibTeX RDF
1	Jian-Bang Zhao, Lin Gao	An algorithm for extracting subgraph of specific species from metabolic pathway.	BIC-TA	2010	DBLP DOI BibTeX RDF
1	Aziz Mithani, Gail M. Preston, Jotun Hein	Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Chih-Hung Chou, Wen-Chi Chang, Chih-Min Chiu, Chih-Chang Huang, Hsien-Da Huang	FMM: a web server for metabolic pathway reconstruction and comparative analysis.	Nucleic Acids Research	2009	DBLP DOI BibTeX RDF
1	Ali Cakmak, Arun Dsouza, Richard W. Hanson, Gultekin Özsoyoglu, Z. Meral Özsoyoglu	A web-based data source for metabolomics.	ISCIS	2009	DBLP DOI BibTeX RDF
1	Stephan Weise, Christian Colmsee, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Matthias Lange, Uwe Scholz, Falk Schreiber	An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism.	DILS	2009	DBLP DOI BibTeX RDF
1	Pedro Evangelista, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha	Evolutionary Approaches for Strain Optimization Using Dynamic Models under a Metabolic Engineering Perspective.	EvoBIO	2009	DBLP DOI BibTeX RDF
1	Taisuke Sato	Statistical Learning of Probabilistic BDDs.	SAGA	2009	DBLP DOI BibTeX RDF
1	Bridget Chukualim, Nick Peters, Christiane Hertz-Fowler, Matthew Berriman	TrypanoCyc - a metabolic pathway database for Trypanosoma brucei.	BMC Bioinformatics	2008	DBLP BibTeX RDF
1	Yunlei Li, Dick de Ridder, Marco J. L. de Groot, Marcel J. T. Reinders	Metabolic Pathway Alignment (M-Pal) Reveals Diversity and Alternatives in Conserved Networks.	APBC	2008	DBLP BibTeX RDF
1	Allison P. Heath, George N. Bennett, Lydia E. Kavraki	Visualizing the Results of Metabolic Pathway Queries.	Graph Drawing	2008	DBLP DOI BibTeX RDF
1	Matthew Eavenson, Maciej Janik, Shravya Nimmagadda, John A. Miller, Krys Kochut, William S. York	GlycoBrowser: A Tool for Contextual Visualization of Biological Data and Pathways Using Ontologies.	ISBRA	2008	DBLP DOI BibTeX RDF	GlycoBrowser, pathway browsing, metabolic pathway exploration, glycomics, ontology, semantic web, transcriptomics
1	Yiannis Kanaris, Konstantinos Moutselos, Aristotelis Chatziioannou, Ilias Maglogiannis, Fragiskos N. Kolisis	Building in-silico pathway SBML models from heterogeneous sources.	BIBE	2008	DBLP DOI BibTeX RDF
1	Andrei Doncescu, Gilles Richard, Muhamed Farmer	Diagnostic and Therapy Prediction in Breast Cancer by Consistent Knowledge Discovery.	CISIS	2008	DBLP DOI BibTeX RDF
1	Alexander Ullrich, Christoph Flamm	Functional Evolution of Ribozyme-Catalyzed Metabolisms in a Graph-Based Toy-Universe.	CMSB	2008	DBLP DOI BibTeX RDF	metabolism, enzymes, simulation, robustness, evolution
1	Yusuke Nakagawa, Katsuyuki Yugi, Kenji Tsuge, Mitsuhiro Itaya, Hiroshi Yanagawa, Yasubumi Sakakibara	Operon Structure Optimization by Random Self-assembly.	DNA	2008	DBLP DOI BibTeX RDF
1	Shailza Singh, B. K. Malik, D. K. Sharma	Metabolic Pathway Analysis of S. Pneumoniae: an in silico Approach towards Drug-Design.	J. Bioinformatics and Computational Biology	2007	DBLP DOI BibTeX RDF
1	Jennifer L. Neary, Anthony Montanez, Timothy G. Lilburn, Yufeng Wang	Metabolic pathway complements of Five Francisella strains.	BIOCOMP	2007	DBLP BibTeX RDF
1	I. Barjis, V. Gehlot	Petri net based description and modeling of metabolic pathway.	SCSC	2007	DBLP DOI BibTeX RDF	pentose phosphate pathway, simulation, modeling, Petri net
1	Andrei Doncescu, Yoshitaka Yamamoto, Katsumi Inoue	Biological Systems Analysis Using Inductive Logic Programming.	AINA Workshops	2007	DBLP DOI BibTeX RDF
1	Akiyuki Iwasaki, Tadasuke Nozoe, Takashi Kawauchi, Masahiro Okamoto	Design of Bio-inspired Fault-tolerant Adaptive Routing Based on Enzymatic Feedback Control in the Cell: Towards Averaging Load Balance in the Network.	FBIT	2007	DBLP DOI BibTeX RDF
1	Tsubasa Yamamoto, Tomonobu Ozaki, Takenao Ohkawa	Discovery of Frequent Graph Patterns that Consist of the Vertices with the Complex Structures.	MCD	2007	DBLP DOI BibTeX RDF
1	Shuqin Wang, Yan Wang, Wei Du, Fangxun Sun, Xiumei Wang, Yanchun Liang, Chunguang Zhou	A Multi-gene-Feature-Based Genetic Algorithm for Prediction of Operon.	ICANNGA	2007	DBLP DOI BibTeX RDF
1	Andrei Doncescu, Katsumi Inoue, Yoshitaka Yamamoto	Knowledge Based Discovery in Systems Biology Using CF-Induction.	IEA/AIE	2007	DBLP DOI BibTeX RDF
1	Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yoichi Nakayama, Masaru Tomita	GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Stephan Weise, Ivo Grosse, Christian Klukas, Dirk Koschützki, Uwe Scholz, Falk Schreiber, Björn H. Junker	Meta-All: a system for managing metabolic pathway information.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Yong Zhang, Shaojuan Li, Geir Skogerbø, Zhihua Zhang, Xiaopeng Zhu, Zefeng Zhang, Shiwei Sun, Hongchao Lu, Baochen Shi, Runsheng Chen	Phylophenetic properties of metabolic pathway topologies as revealed by global analysis.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Luca Pireddu, Duane Szafron, Paul Lu, Russell Greiner	The Path-A metabolic pathway prediction web server.	Nucleic Acids Research	2006	DBLP DOI BibTeX RDF
1	Greeshma Neglur, Robert L. Grossman, Natalia Maltsev, Clement T. Yu	Using Term Lists and Inverted Files to Improve Search Speed for Metabolic Pathway Databases.	DILS	2006	DBLP DOI BibTeX RDF
1	Roger A. Craig, Li Liao	Protein classification using transductive learning on phylogenetic profiles.	SAC	2006	DBLP DOI BibTeX RDF
1	Kai Xu	Web-Based Genomic Information Integration with Gene Ontology.	APWeb	2006	DBLP DOI BibTeX RDF
1	Takashi Kawauchi, Tadasuke Nozoe, Masahiro Okamoto	Biologically Inspired Adaptive Routing by Mimicking Enzymic Feedback Control Mechanism in the Cell.	BioADIT	2006	DBLP DOI BibTeX RDF
1	Qingfeng Chen, Yi-Ping Phoebe Chen, Chengqi Zhang, Lianggang Li	Mining Frequent Itemsets for Protein Kinase Regulation.	PRICAI	2006	DBLP DOI BibTeX RDF
1	Syed Asad Rahman, P. Advani, R. Schunk, Rainer Schrader, Dietmar Schomburg	Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC).	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Ross D. King, Simon M. Garrett, George Macleod Coghill	On the use of qualitative reasoning to simulate and identify metabolic pathway.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Sharmila Anishetty, Mrudula Pulimi, Pennathur Gautam	Potential drug targets in Mycobacterium tuberculosis through metabolic pathway analysis.	Computational Biology and Chemistry	2005	DBLP DOI BibTeX RDF
1	Luca Pireddu, Brett Poulin, Duane Szafron, Paul Lu, David S. Wishart	Pathway Analyst--Automated Metabolic Pathway Prediction.	CIBCB	2005	DBLP BibTeX RDF
1	Laurent Tournier	Approximation of dynamical systems using s-systems theory: application to biological systems.	ISSAC	2005	DBLP DOI BibTeX RDF	positive equilibria, stability, dynamical systems, power-law, s-systems
1	R. Nigam, S. Liang	A Pivoting Algorithm for Metabolic Networks in the Presence of Thermodynamic Constraints.	CSB	2005	DBLP DOI BibTeX RDF
1	Liliana Félix, Gabriel Valiente, Francesc Rosselló	Optimal Artificial Chemistries and Metabolic Pathways.	ENC	2005	DBLP DOI BibTeX RDF
1	Flavio Corradini, Emanuela Merelli, Marco Vita	A Multi-agent System for Modelling Carbohydrate Oxidation in Cell.	ICCSA	2005	DBLP DOI BibTeX RDF
1	Michelle L. Green, Peter D. Karp	A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.	BMC Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Ming Chen, Ralf Hofestädt	An algorithm for linear metabolic pathway alignment.	In Silico Biology	2004	DBLP BibTeX RDF
1	Francesc Rosselló, Gabriel Valiente	Analysis of Metabolic Pathways by Graph Transformation.	ICGT	2004	DBLP DOI BibTeX RDF
1	Alireza Tamaddoni-Nezhad, Antonis C. Kakas, Stephen Muggleton, Florencio Pazos	Modelling Inhibition in Metabolic Pathways Through Abduction and Induction.	ILP	2004	DBLP DOI BibTeX RDF
1	Catherine J. Hack, Jesús A. López	An Exploration of Some Factors Affecting the Correlation of mRNA and Proteomic Data.	KELSI	2004	DBLP DOI BibTeX RDF
1	Arvind K. Bansal, Christopher Woolverton	Applying Automatically Derived Gene-Groups to Automatically Predict and Refine Metabolic Pathways.	IEEE Trans. Knowl. Data Eng.	2003	DBLP DOI BibTeX RDF	enzymes, gene-groups, microbes, operons, orthologs, pathogenicity, Automation, homologs, drug-discovery, pathway, metabolic pathway, bacteria
1	Hiroshi Mamitsuka, Yasushi Okuno, Atsuko Yamaguchi	Mining biologically active patterns in metabolic pathways using microarray expression profiles.	SIGKDD Explorations	2003	DBLP DOI BibTeX RDF	microarray profiles, Markov Models, model-based clustering, finite mixture models, metabolic pathways
1	Yves Deville, David Gilbert, Jacques van Helden, Shoshana J. Wodak	An Overview of Data Models for the Analysis of Biochemical Pathways.	CMSB	2003	DBLP DOI BibTeX RDF
1	Suzanne M. Paley, Peter D. Karp	Evaluation of computational metabolic-pathway predictions for Helicobacter pylori.	Bioinformatics	2002	DBLP DOI BibTeX RDF
1	Shoko Miyake, Yukako Tohsato, Hideo Matsuda	An Application of a Pathway Alignment Method to Comparative Analysis between Genome and Pathways.	CSB	2002	DBLP DOI BibTeX RDF
1	Yonatan Bilu, Michal Linial	Functional Consequences in Metabolic Pathways from Phylogenetic Profiles.	WABI	2002	DBLP DOI BibTeX RDF
1	Ulrike Wittig, Ann De Beuckelaer	Analysis and Comparison of Metabolic Pathway Databases.	Briefings in Bioinformatics	2001	DBLP DOI BibTeX RDF
1	Ionela Zevedei-Oancea, Stefan Schuster	Treatment of multifunctional enzymesin metabolic pathway analysis.	German Conference on Bioinformatics	2001	DBLP BibTeX RDF
1	Dietmar Schomburg, Ida Schomburg, Antje Chang, Oliver Hofmann, Christian Ebeling, F. Ehrentreich	BRENDA a resource for Enzyme data and metabolic pathway information.	German Conference on Bioinformatics	2001	DBLP BibTeX RDF
1	Hartmann J. Genrich, Robert Küffner, Klaus Voss	Executable Petri net models for the analysis of metabolic pathways.	STTT	2001	DBLP DOI BibTeX RDF	Glycolysis, Citric acid cycle, Coloured Petri nets, Executable model, Metabolic pathway
1	Yukako Tohsato, Hideo Matsuda, Akihiro Hashimoto	A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy.	ISMB	2000	DBLP BibTeX RDF
1	Minoru Kanehisa	Sequence comparison to graph comparison--a new generation of algorithms for network analysis of interacting molecules (abstract only).	RECOMB	2000	DBLP DOI BibTeX RDF
1	Arvind K. Bansal, Peer Bork	Applying Logic Programming to Derive Novel Functional Information of Genomes.	PADL	1999	DBLP DOI BibTeX RDF
1	L. B. Ellis, S. M. Speedie, R. McLeish	Representing metabolic pathway information: an object-oriented approach.	Bioinformatics	1998	DBLP DOI BibTeX RDF
1	Barry Zeeberg, Kevin Watanabe, Susumu Goto, Ross A. Overbeek, Larry Kerschberg, George Michaels	Metabolic Pathway Interface to Molecular Biology Databases.	SSDBM	1998	DBLP BibTeX RDF
1	Evgeni Selkov, Miliusha Galimova, Igor Goryanin, Yuri Grechkin, Natalia Ivanova, Yuri Komarov, Natalia Maltsev, Natalia Mikhailova, Valeri Nenashev, Ross A. Overbeek, Elena Panyushkina, Lyudmila Pronevitch, Evgeni Selkov Jr.	The metabolic pathway collection: an update.	Nucleic Acids Research	1997	DBLP DOI BibTeX RDF
1	Evgeni Selkov, Svetlana Basmanova, Terry Gaasterland, Igor Goryanin, Yuri Grechkin, Natalia Maltsev, Valeri Nenashev, Ross A. Overbeek, Elena Panyushkina, Lyudmila Pronevitch, Evgeni Selkov Jr., Ilya Yunus	The metabolic pathway collection from EMP: the enzymes and metabolic pathways database.	Nucleic Acids Research	1996	DBLP DOI BibTeX RDF