Search results for "Peter D. Karp"

Hits ?▲	Authors	Title	Venue	Year	Link
1	Mario Latendresse, Markus Krummenacker, Miles Trupp, Peter D. Karp	Construction and completion of flux balance models from pathway databases.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Ron Caspi, Tomer Altman, Kate Dreher, Carol A. Fulcher, Pallavi Subhraveti, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Anuradha Pujar, Alexander Glennon Shearer, Michael Travers, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp	The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.	Nucleic Acids Research	2012	DBLP DOI BibTeX RDF
1	Mario Latendresse, Peter D. Karp	Web-Based Metabolic Network Visualization with a Zooming User Interface.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Luciana Ferrer, Alexander Glennon Shearer, Peter D. Karp	Discovering novel subsystems using comparative genomics.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Ingrid M. Keseler, Julio Collado-Vides, Alberto Santos-Zavaleta, Martín Peralta-Gil, Socorro Gama-Castro, Luis Muñiz-Rascado, César Bonavides-Martínez, Suzanne M. Paley, Markus Krummenacker, Tomer Altman, Pallavi Kaipa, Aaron Spaulding, John Pacheco, Mario Latendresse, Carol A. Fulcher, Malabika Sarker, Alexander Glennon Shearer, Amanda Mackie, Ian T. Paulsen, Robert P. Gunsalus, Peter D. Karp	EcoCyc: a comprehensive database of Escherichia coli biology.	Nucleic Acids Research	2011	DBLP DOI BibTeX RDF
1	Joseph M. Dale, Liviu Popescu, Peter D. Karp	Machine learning methods for metabolic pathway prediction.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Luciana Ferrer, Joseph M. Dale, Peter D. Karp	A systematic study of genome context methods: calibration, normalization and combination.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Ron Caspi, Tomer Altman, Joseph M. Dale, Kate Dreher, Carol A. Fulcher, Fred Gilham, Pallavi Kaipa, Athikkattuvalasu S. Karthikeyan, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Suzanne M. Paley, Liviu Popescu, Anuradha Pujar, Alexander Glennon Shearer, Peifen Zhang, Peter D. Karp	The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.	Nucleic Acids Research	2010	DBLP DOI BibTeX RDF
1	Peter D. Karp, Suzanne M. Paley, Markus Krummenacker, Mario Latendresse, Joseph M. Dale, Thomas J. Lee, Pallavi Kaipa, Fred Gilham, Aaron Spaulding, Liviu Popescu, Tomer Altman, Ian T. Paulsen, Ingrid M. Keseler, Ron Caspi	Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.	Briefings in Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Peter D. Karp	Databases and Algorithms for Pathway Bioinformatics.	HEALTHINF	2010	DBLP BibTeX RDF
1	Peter D. Karp	Development of Large Scientific Knowledge Bases.	ICAART	2010	DBLP BibTeX RDF
1	Ingrid M. Keseler, César Bonavides-Martínez, Julio Collado-Vides, Socorro Gama-Castro, Robert P. Gunsalus, D. Aaron Johnson, Markus Krummenacker, Laura M. Nolan, Suzanne M. Paley, Ian T. Paulsen, Martín Peralta-Gil, Alberto D. Santos-Zavaleta, Alexander Glennon Shearer, Peter D. Karp	EcoCyc: A comprehensive view of Escherichia coli biology.	Nucleic Acids Research	2009	DBLP DOI BibTeX RDF
1	Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Pallavi Kaipa, Markus Krummenacker, Mario Latendresse, Suzanne M. Paley, Seung Yon Rhee, Alexander Glennon Shearer, Christophe Tissier, Thomas C. Walk, Peifen Zhang, Peter D. Karp	The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.	Nucleic Acids Research	2008	DBLP DOI BibTeX RDF
1	Thomas J. Lee, Ian T. Paulsen, Peter D. Karp	Annotation-based inference of transporter function.	ISMB	2008	DBLP DOI BibTeX RDF
1	Peter D. Karp, Thomas J. Lee, Valerie Wagner	BioWarehouse: Relational Integration of Eleven Bioinformatics Databases and Formats.	DILS	2008	DBLP DOI BibTeX RDF
1	Yannick Pouliot, Peter D. Karp	A survey of orphan enzyme activities.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Michelle L. Green, Peter D. Karp	Using genome-context data to identify specific types of functional associations in pathway/genome databases.	ISMB/ECCB (Supplement of Bioinformatics)	2007	DBLP DOI BibTeX RDF
1	Heladia Salgado, Alberto Santos-Zavaleta, Socorro Gama-Castro, Martín Peralta-Gil, Mónica I. Peñaloza-Spínola, Agustino Martínez-Antonio, Peter D. Karp, Julio Collado-Vides	The comprehensive updated regulatory network of Escherichia coli K-12.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Priyanka Gupta, David W. J. Stringer-Calvert, Jessica D. Tenenbaum, Peter D. Karp	BioWarehouse: a bioinformatics database warehouse toolkit.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Rebecca Hopkinson, John Ingraham, Pallavi Kaipa, Markus Krummenacker, Suzanne M. Paley, John Pick, Seung Yon Rhee, Christophe Tissier, Peifen Zhang, Peter D. Karp	MetaCyc: a multiorganism database of metabolic pathways and enzymes.	Nucleic Acids Research	2006	DBLP DOI BibTeX RDF
1	Markus Krummenacker, Suzanne M. Paley, Lukas A. Mueller, Thomas Yan, Peter D. Karp	Querying and computing with BioCyc databases.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Ingrid M. Keseler, Julio Collado-Vides, Socorro Gama-Castro, John Ingraham, Suzanne M. Paley, Ian T. Paulsen, Martín Peralta-Gil, Peter D. Karp	EcoCyc: a comprehensive database resource for Escherichia coli.	Nucleic Acids Research	2005	DBLP DOI BibTeX RDF
1	Michelle L. Green, Peter D. Karp	A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.	BMC Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Pedro Romero, Peter D. Karp	Using functional and organizational information to improve genome-wide computational prediction of transcription units on pathway-genome databases.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Cynthia J. Krieger, Peifen Zhang, Lukas A. Mueller, Alfred Wang, Suzanne M. Paley, Martha Arnaud, John Pick, Seung Yon Rhee, Peter D. Karp	MetaCyc: a multiorganism database of metabolic pathways and enzymes.	Nucleic Acids Research	2004	DBLP DOI BibTeX RDF
1	Peter D. Karp, Suzanne M. Paley, Cynthia J. Krieger, Peifen Zhang	An Evidence Ontology for Use in Pathway/Genome Databases.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
1	Peter D. Karp	What Database Management System(s) Should Be Employed in Bioinformatics Applications?	OMICS	2003	DBLP DOI BibTeX RDF
1	Iwei Yeh, Peter D. Karp, Natalya Fridman Noy, Russ B. Altman	Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO).	Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Peter D. Karp, Eric P. Neumann, Alexander J. Hartemink, Pedro Romero	Genome, Pathway, and Interaction Bioinformatics - Session Introduction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
1	Peter D. Karp	Pathway Bioinformatics. (PDF / PS)	CSB	2003	DBLP DOI BibTeX RDF
1	Suzanne M. Paley, Peter D. Karp	Evaluation of computational metabolic-pathway predictions for Helicobacter pylori.	Bioinformatics	2002	DBLP DOI BibTeX RDF
1	Peter D. Karp, Monica Riley, Milton H. Saier Jr., Ian T. Paulsen, Julio Collado-Vides, Suzanne M. Paley, Alida Pellegrini-Toole, César Bonavides-Martínez, Socorro Gama-Castro	The EcoCyc Database.	Nucleic Acids Research	2002	DBLP DOI BibTeX RDF
1	Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole	The MetaCyc Database.	Nucleic Acids Research	2002	DBLP DOI BibTeX RDF
1	Peter D. Karp, Pedro Romero, Eric P. Neumann	Genome, Pathway and Interaction Bioinformatics - Session Introduction.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
1	Peter D. Karp, Suzanne M. Paley, Pedro Romero	The Pathway Tools software.	ISMB	2002	DBLP BibTeX RDF
1	Peter D. Karp, Suzanne M. Paley, Jingchun Zhu	Database verification studies of SWISS-PROT and GenBank.	Bioinformatics	2001	DBLP DOI BibTeX RDF
1	Pedro Romero, Peter D. Karp	Nutrition-Related Analysis of Pathway/Genome Databases.	Pacific Symposium on Biocomputing	2001	DBLP BibTeX RDF
1	Peter D. Karp, Eric P. Neumann, Pedro Romero	Genome, Pathway and Interaction Bioinformatics - Session Introduction.	Pacific Symposium on Biocomputing	2001	DBLP BibTeX RDF
1	Peter D. Karp	An ontology for biological function based on molecular interactions.	Bioinformatics	2000	DBLP DOI BibTeX RDF
1	Peter D. Karp, Monica Riley, Milton H. Saier Jr., Ian T. Paulsen, Suzanne M. Paley, Alida Pellegrini-Toole	The EcoCyc and MetaCyc databases.	Nucleic Acids Research	2000	DBLP DOI BibTeX RDF
1	Robin McEntire, Peter D. Karp, Neil F. Abernethy, David Benton, Gregg Helt, Matt DeJongh, Robert Kent, Anthony Kosky, Suzanna Lewis, Dan Hodnett, Eric P. Neumann, Frank Olken, Dhiraj K. Pathak, Peter Tarczy-Hornoch, Luca Toldo, Thodoros Topaloglou	An Evaluation of Ontology Exchange Languages for Bioinformatics.	ISMB	2000	DBLP BibTeX RDF
1	Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole, Markus Krummenacker	Eco Cyc: encyclopedia of Escherichia coli genes and metabolism.	Nucleic Acids Research	1999	DBLP DOI BibTeX RDF
1	Peter D. Karp, Vinay K. Chaudhri, Suzanne M. Paley	A Collaborative Environment for Authoring Large Knowledge Bases.	J. Intell. Inf. Syst.	1999	DBLP DOI BibTeX RDF
1	Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole, Markus Krummenacker	EcoCyc: Encyclopedia of Escherichia coli genes and metabolism.	Nucleic Acids Research	1998	DBLP DOI BibTeX RDF
1	Vinay K. Chaudhri, Adam Farquhar, Richard Fikes, Peter D. Karp, James Rice	OKBC: A Programmatic Foundation for Knowledge Base Interoperability.	AAAI/IAAI	1998	DBLP BibTeX RDF
1	Ronald G. Forsythe Jr., Peter D. Karp, Michael L. Mavrovouniotis	Estimation of equilibrium constants using automated group contribution methods.	Computer Applications in the Biosciences	1997	DBLP DOI BibTeX RDF
1	Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole, Markus Krummenacker	EcoCyc: Enyclopedia of Escherichia coli Genes and Metabolism.	Nucleic Acids Research	1997	DBLP DOI BibTeX RDF
1	Vinay K. Chaudhri, Peter D. Karp	Querying Schema Information.	KRDB	1997	DBLP BibTeX RDF
1	Terry Gaasterland, Peter D. Karp, Kevin Karplus, Christos A. Ouzounis, Chris Sander, Alfonso Valencia (eds.)	Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, Halkidiki, Greece, June 21-26, 1997	ISMB	1997	DBLP BibTeX RDF
1	Marie desJardins, Peter D. Karp, Markus Krummenacker, Thomas J. Lee, Christos A. Ouzounis	Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity.	ISMB	1997	DBLP BibTeX RDF
1	Suzanne M. Paley, John D. Lowrance, Peter D. Karp	A Generic Knowledge-Base Browser and Editor.	AAAI/IAAI	1997	DBLP BibTeX RDF
1	Peter D. Karp, Suzanne M. Paley	Integrated Access to Metabolic and Genomic Data.	Journal of Computational Biology	1996	DBLP BibTeX RDF
1	Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole	EcoCyc: an encyclopedia of Escherichia coli genes and metabolism.	Nucleic Acids Research	1996	DBLP DOI BibTeX RDF
1	Peter D. Karp, Christos A. Ouzounis, Suzanne M. Paley	HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae.	ISMB	1996	DBLP BibTeX RDF
1	Araceli M. Huerta, Julio Collado-Vides, Peter D. Karp, Kathleen Klose	Three Models of Gene Regulation in E.coli.	German Conference on Bioinformatics	1996	DBLP BibTeX RDF
1	Peter D. Karp	A Strategy for Database Interoperation.	Journal of Computational Biology	1995	DBLP BibTeX RDF
1	Peter D. Karp, Suzanne M. Paley	Knowledge Representation in the Large.	IJCAI	1995	DBLP BibTeX RDF
1	Peter D. Karp, Karen L. Myers, Thomas R. Gruber	The Generic Frame Protocol.	IJCAI	1995	DBLP BibTeX RDF
1	Peter D. Karp, John D. Lowrance, Thomas M. Strat, David E. Wilkins	The Grasper-CL Graph Management System.	Lisp and Symbolic Computation	1994	DBLP BibTeX RDF
1	Peter D. Karp, Michael L. Mavrovouniotis	Representing, Analyzing, and Synthesizing Biochemical Pathways.	IEEE Expert	1994	DBLP DOI BibTeX RDF
1	Russ B. Altman, Douglas L. Brutlag, Peter D. Karp, Richard H. Lathrop, David B. Searls (eds.)	Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, USA	ISMB	1994	DBLP BibTeX RDF
1	Peter D. Karp, Suzanne M. Paley	Representations of Metabolic Knowledge: Pathways.	ISMB	1994	DBLP BibTeX RDF
1	Peter D. Karp, Suzanne M. Paley, Ira Greenberg	A Storage System for Scalable Knowledge Representation.	CIKM	1994	DBLP DOI BibTeX RDF
1	Peter D. Karp	Design Methods for Scientific Hypothesis Formation and Their Application to Molecular Biology.	Machine Learning	1993	DBLP DOI BibTeX RDF
1	Peter D. Karp, Monica Riley	Representations of Metabolic Knowledge.	ISMB	1993	DBLP BibTeX RDF
1	Peter D. Karp	A knowledge base of the chemical compounds of intermediary metabolism.	Computer Applications in the Biosciences	1992	DBLP DOI BibTeX RDF
1	Peter D. Karp	Artificial intelligence methods for theory representation and hypothesis formation.	Computer Applications in the Biosciences	1991	DBLP DOI BibTeX RDF
1	Peter D. Karp	Hypothesis Formation and Qualitative Reasoning in Molecular Biology.	AI Magazine	1990	DBLP BibTeX RDF

Publications of "Peter D. Karp" ( http://dblp.L3S.de/Authors/Peter_D._Karp )