Search results for "Protein classification"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
3	Luiz Henrique de Campos Merschmann, Alexandre Plastino	A Bayesian approach for protein classification.	SAC	2006	DBLP DOI BibTeX RDF	data mining, bayesian classifier, protein classification
2	Denise Fukumi Tsunoda, Heitor S. Lopes, Alex Alves Freitas	A Hybrid Evolutionary Approach for the Protein Classification Problem.	ICCCI	2009	DBLP DOI BibTeX RDF	Protein classification problem, genetic algorithm, genetic programming, evolutionary computation, Bioinformatics
2	András Bánhalmi, Róbert Busa-Fekete, Balázs Kégl	A One-Class Classification Approach for Protein Sequences and Structures.	ISBRA	2009	DBLP DOI BibTeX RDF	ROC analysis, One-class classification, Protein classification
2	Dino Franklin, Somdutta Dhir, Sándor Pongor	Analysis of Kernel Based Protein Classification Strategies Using Pairwise Sequence Alignment Measures.	CIBB	2008	DBLP DOI BibTeX RDF
2	André O. Falcão, Daniel Faria, António E. N. Ferreira	Peptide programs: applying fragment programs to protein classification.	DTMBIO	2008	DBLP DOI BibTeX RDF	machine learning, classification, bioinformatics, proteins
2	Thomas Lingner, Peter Meinicke	Fast Target Set Reduction for Large-Scale Protein Function Prediction: A Multi-class Multi-label Machine Learning Approach.	WABI	2008	DBLP DOI BibTeX RDF	Pfam, target set reduction, machine learning, large-scale, protein classification, multi-class, metagenomics, homology search, protein function prediction, multi-label
2	Vassilis Tsatsaias, Petros Daras, Michael G. Strintzis	3D Protein Classification using Topological, Geometrical and Biological Information.	ICIP	2007	DBLP DOI BibTeX RDF
2	Evgeni Tsivtsivadze, Jorma Boberg, Tapio Salakoski	Locality Kernels for Protein Classification.	WABI	2007	DBLP DOI BibTeX RDF
2	Luiz Henrique de Campos Merschmann, Alexandre Plastino	HiSP: A Probabilistic Data Mining Technique for Protein Classification.	International Conference on Computational Science	2006	DBLP DOI BibTeX RDF
2	Roger A. Craig, Li Liao	Protein classification using transductive learning on phylogenetic profiles.	SAC	2006	DBLP DOI BibTeX RDF
2	Faouzi Mhamdi, Ricco Rakotomalala, Mourad Elloumi	A Hierarchical n-Grams Extraction Approach for Classification Problem.	SITIS	2006	DBLP DOI BibTeX RDF	Data mining, SVM, Association Rules, Frequent itemsets, n-grams, Protein Classification
2	Xiong Wang	Finding Patterns on Protein Surfaces: Algorithms and Applications to Protein Classification.	IEEE Trans. Knowl. Data Eng.	2005	DBLP DOI BibTeX RDF
2	Faouzi Mhamdi, Ricco Rakotomalala, Mourad Elloumi	Feature Ranking for Protein Classification.	CORES	2005	DBLP DOI BibTeX RDF
2	Sotiris Diplaris, Grigorios Tsoumakas, Pericles A. Mitkas, Ioannis P. Vlahavas	Protein Classification with Multiple Algorithms.	Panhellenic Conference on Informatics	2005	DBLP DOI BibTeX RDF
2	J. Dylan Spalding, David C. Hoyle	Accuracy of String Kernels for Protein Sequence Classification.	ICAPR	2005	DBLP DOI BibTeX RDF	Homology, String Kernel, Protein Classification
2	Tolga Can, Orhan Çamoglu, Ambuj K. Singh, Yuan-Fang Wang	Automated Protein Classification Using Consensus Decision.	CSB	2004	DBLP DOI BibTeX RDF	decision trees, protein classification, SCOP
2	Martin Chew Wooi Keat, Rosni Abdullah, Rosalina Abdul Salam	Parallel Artificial Intelligence Hybrid Framework for Protein Classification.	LSGRID	2004	DBLP DOI BibTeX RDF
2	Rui Kuang, Eugene Ie, Ke Wang, Kai Wang, Mahira Siddiqi, Yoav Freund, Christina S. Leslie	Profile-Based String Kernels for Remote Homology Detection and Motif Extraction.	CSB	2004	DBLP DOI BibTeX RDF	protein motifs, support vector machine, kernels, protein classification
2	Juan J. Merelo Guervós, Miguel A. Andrade, Carlos Ureña, Alberto Prieto, Federico Morán	Application of Vector Quantization Algorithms to Protein Classification and Secondary Structure Computation.	IWANN	1991	DBLP DOI BibTeX RDF
1	Nazar Zaki, Stefan Wolfsheimer, Grégory Nuel, Sawsan Khuri	Conotoxin Protein Classification Using Free Scores of Words and Support Vector Machines.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Denise Fukumi Tsunoda, Alex Alves Freitas, Heitor Silvério Lopes	A genetic programming method for protein motif discovery and protein classification.	Soft Comput.	2011	DBLP DOI BibTeX RDF
1	Muhammad Mahbubur Rahman, Arif Ul Alam, Abdullah Al Mamun, Tamnun E. Mursalin	A more appropriate Protein Classification using Data Mining	CoRR	2011	DBLP BibTeX RDF
1	Thiago de Souza Rodrigues, Fernanda Caldas Cardoso, Santuza Maria Ribeiro Teixeira, Sergio Costa Oliveira, Antonio Padua Braga	Protein Classification with Extended-Sequence Coding by Sliding Window.	IEEE/ACM Trans. Comput. Biology Bioinform.	2011	DBLP DOI BibTeX RDF
1	Nazar Zaki, Fadi N. Sibai, Piers Campbell	Conotoxin protein classification using pairwise comparison and amino acid composition: toxin-aam.	GECCO	2011	DBLP DOI BibTeX RDF
1	Lu Cai, Shen Qin, Zhiyong Pei	Novel hub protein classification and interaction rules in protein-protein interaction network in Saccharomyces cerevisia.	FSKD	2011	DBLP DOI BibTeX RDF
1	Ulavappa B. Angadi, M. Venkatesulu	Fuzzyart Neural Network for protein Classification.	J. Bioinformatics and Computational Biology	2010	DBLP DOI BibTeX RDF
1	Ning Jin, Calvin Young, Wei Wang 0010	Discriminative Subgraph Mining for Protein Classification.	IJKDB	2010	DBLP DOI BibTeX RDF
1	Sheryl Brahnam, Loris Nanni, Jian-Yu Shi, Alessandra Lumini	Local Phase Quantization Texture Descriptor for Protein Classification.	BIOCOMP	2010	DBLP BibTeX RDF
1	Yugang Li, Yao Lu, Fa Zhang, ZhenGe Qiu, Zhiyong Liu	Protein classification using family profiles.	FSKD	2010	DBLP DOI BibTeX RDF
1	Yugang Li, Zhiyong Liu, Fa Zhang, ZhenGe Qiu	A New Method for Remote Protein Classification.	BMEI	2009	DBLP DOI BibTeX RDF
1	Sumeet Dua, Sheetal Saini	Data Shrinking Based Feature Ranking for Protein Classification.	ICISTM	2009	DBLP DOI BibTeX RDF
1	Denise Fukumi Tsunoda, Alex Alves Freitas, Heitor S. Lopes	MAHATMA: A Genetic Programming-Based Tool for Protein Classification.	ISDA	2009	DBLP DOI BibTeX RDF
1	Georgina Mirceva, Danco Davcev	HMM Approach for Classifying Protein Structures.	FGIT	2009	DBLP DOI BibTeX RDF	Hidden Markov Model, Protein classification, SCOP
1	Lionel Morgado, Carlos Pereira	Incremental Kernel Machines for Protein Remote Homology Detection.	HAIS	2009	DBLP DOI BibTeX RDF	incremental learning, Kernel machines, protein classification
1	Ricardo Cerri, Renato R. O. da Silva, André Carlos Ponce Leon Ferreira de Carvalho	Comparing Methods for Multilabel Classification of Proteins Using Machine Learning Techniques.	BSB	2009	DBLP DOI BibTeX RDF	Machine Learning, Classification, Bioinformatics, Proteins, Multilabel
1	Themis P. Exarchos, Markos G. Tsipouras, Costas Papaloukas, Dimitrios I. Fotiadis	An optimized sequential pattern matching methodology for sequence classification.	Knowl. Inf. Syst.	2009	DBLP DOI BibTeX RDF	Sequential pattern matching, Optimization, Sequential pattern mining, Sequence classification
1	Shibu Yooseph, Weizhong Li, Granger G. Sutton	Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Loris Nanni, Alessandra Lumini	A genetic approach for building different alphabets for peptide and protein classification.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Keith Marsolo, Srinivasan Parthasarathy	On the use of structure and sequence-based features for protein classification and retrieval.	Knowl. Inf. Syst.	2008	DBLP DOI BibTeX RDF	Protein indexing, Protein retrieval, Sequence and structure-based protein representations, Bioinformatics
1	Róbert Busa-Fekete, András Kocsor, Sándor Pongor	Tree-Based Algorithms for Protein Classification.	Computational Intelligence in Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Gérard Ramstein, Nicolas Beaume, Yannick Jacques	A Grammatical Swarm for protein classification.	IEEE Congress on Evolutionary Computation	2008	DBLP DOI BibTeX RDF
1	Wen-Yun Yang, Bao-Liang Lu	String Kernels with Feature Selection for SVM Protein Classification.	APBC	2008	DBLP BibTeX RDF
1	Antonina Mitrofanova, Samantha Kleinberg, Jane Carlton, Simon Kasif, Bud Mishra	Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic Profiles.	BIBM	2008	DBLP DOI BibTeX RDF
1	Xiaonan Ji, James Bailey, Kotagiri Ramamohanarao	g-MARS: Protein Classification Using Gapped Markov Chains and Support Vector Machines.	PRIB	2008	DBLP DOI BibTeX RDF
1	Chenyang Cui, Zhen Liu	Classification of 3d Protein based on Structure Information Feature.	BMEI	2008	DBLP DOI BibTeX RDF	3d protein classification, structure information dimension
1	Jingyi Yang, Jitender S. Deogun	Classifying G Protein-Coupled Receptors with Multiple Physicochemical Properties.	BMEI	2008	DBLP DOI BibTeX RDF	physicochemical properties, SVM, protein classification, G Protein-Coupled Receptors
1	William B. Langdon, Wolfgang Banzhaf	A SIMD Interpreter for Genetic Programming on GPU Graphics Cards.	EuroGP	2008	DBLP DOI BibTeX RDF
1	Dehui Yuan, Shengyun Yang, Guoming Lai 0002	A Unified String Kernel for Biology Sequence.	ICIC	2008	DBLP DOI BibTeX RDF	unified kernel, improved kernel string, composite kernel string
1	Iain Melvin, Eugene Ie, Jason Weston, William Stafford Noble, Christina S. Leslie	Multi-class Protein Classification Using Adaptive Codes.	Journal of Machine Learning Research	2007	DBLP BibTeX RDF
1	Paolo Sonego, Mircea Pacurar, Somdutta Dhir, Attila Kertész-Farkas, András Kocsor, Zoltán Gáspári, Jack A. M. Leunissen, Sándor Pongor	A Protein Classification Benchmark collection for machine learning.	Nucleic Acids Research	2007	DBLP DOI BibTeX RDF
1	Slobodan Kalajdziski, Georgina Mirceva, Kire Trivodaliev, Danco Davcev	Protein Classification by Matching 3D Structures.	FBIT	2007	DBLP DOI BibTeX RDF
1	Mi Ryung Han, Hee-Joon Chung, Jihun Kim, Dong-Young Noh, Ju Han Kim	Protein Classification from Protein-Domain and Gene-Ontology Annotation Information Using Formal Concept Analysis.	International Conference on Computational Science	2007	DBLP DOI BibTeX RDF
1	Elisa Cilia, Alessandro Moschitti	Advanced Tree-Based Kernels for Protein Classification.	AI*IA	2007	DBLP DOI BibTeX RDF
1	Attila Kertész-Farkas, András Kocsor, Sándor Pongor	Equivalence Learning in Protein Classification.	MLDM	2007	DBLP DOI BibTeX RDF
1	Jacek Lenckowski, Krzysztof Walczak 0002	Simplifying Amino Acid Alphabets Using a Genetic Algorithm and Sequence Alignment.	EvoBIO	2007	DBLP DOI BibTeX RDF	amino acid alphabet, substitution matrices, sequence alignment, protein classification
1	Yuehui Chen, Xueqin Zhang, Mary Qu Yang, Jack Y. Yang	Ensemble of Probabilistic Neural Networks for Protein Fold Recognition.	BIBE	2007	DBLP DOI BibTeX RDF
1	Majid Beigi, Andreas Zell	Synthetic Protein Sequence Oversampling Method for Classification and Remote Homology Detection in Imbalanced Protein Data.	BIRD	2007	DBLP DOI BibTeX RDF
1	Janez Konc, Dusanka Janezic	A Branch and Bound Algorithm for Matching Protein Structures.	ICANNGA	2007	DBLP DOI BibTeX RDF
1	Vichetra Sam, Chin-Hsien Tai, Jean Garnier, Jean-François Gibrat, Byungkook Lee, Peter J. Munson	ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Steven Carroll, Vladimir Pavlovic	Protein classification using probabilistic chain graphs and the Gene Ontology structure.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Petros Daras, Dimitrios Zarpalas, Apostolos Axenopoulos, Dimitrios Tzovaras, Michael G. Strintzis	Three-Dimensional Shape-Structure Comparison Method for Protein Classification.	IEEE/ACM Trans. Comput. Biology Bioinform.	2006	DBLP DOI BibTeX RDF	classification, Information search and retrieval, protein databases
1	Miguel Angel Lozano, Francisco Escolano	Protein classification by matching and clustering surface graphs.	Pattern Recognition	2006	DBLP DOI BibTeX RDF
1	Keith Marsolo, Srinivasan Parthasarathy	On the Use of Structure and Sequence-Based Features for Protein Classification and Retrieval.	ICDM	2006	DBLP DOI BibTeX RDF
1	Kang Ning, Hon Nian Chua	Automated Identification of Protein Classification and Detection of Annotation Errors in Protein Databases Using Statistical Approaches.	KDLL	2006	DBLP DOI BibTeX RDF
1	Katy Wolstencroft, Phillip W. Lord, Lydia Tabernero, Andy Brass, Robert Stevens	Protein classification using ontology classification.	ISMB (Supplement of Bioinformatics)	2006	DBLP DOI BibTeX RDF
1	Lorenzo Baldacci, Matteo Golfarelli, Alessandra Lumini, Stefano Rizzi	A Template-Matching Approach for Protein Surface Clustering.	ICPR	2006	DBLP DOI BibTeX RDF
1	Patrick C. H. Ma, Keith C. C. Chan	An Effective Data Mining Technique for Classifying Unaligned Protein Sequences into Functional Families.	CIT	2006	DBLP DOI BibTeX RDF
1	Kyu Cheol Cho, Da Hye Park, Yong Beom Ma, Jong Sik Lee	Optimal Clustering-Based ART1 Classification in Bioinformatics: G-Protein Coupled Receptors Classification.	ICNC	2006	DBLP DOI BibTeX RDF
1	Majid Beigi, Andreas Zell	SPSO: Synthetic Protein Sequence Oversampling for Imbalanced Protein Data and Remote Homology Detection.	ISBMDA	2006	DBLP DOI BibTeX RDF
1	Majid Beigi, Andreas Zell	A Novel Method for Classifying Subfamilies and Sub-subfamilies of G-Protein Coupled Receptors.	ISBMDA	2006	DBLP DOI BibTeX RDF
1	Bouchra Bouqata, Christopher D. Carothers, Boleslaw K. Szymanski, Mohammed Javeed Zaki	VOGUE: A Novel Variable Order-Gap State Machine for Modeling Sequences.	PKDD	2006	DBLP DOI BibTeX RDF
1	Jianlin Cheng, Michael J. Sweredoski, Pierre Baldi	DOMpro: Protein Domain Prediction Using Profiles, Secondary Structure, Relative Solvent Accessibility, and Recursive Neural Networks.	Data Min. Knowl. Discov.	2006	DBLP DOI BibTeX RDF	domain, protein structure prediction, recursive neural networks
1	Denise Fukumi Tsunoda, Heitor Silvério Lopes	Automatic motif discovery in an enzyme database using a genetic algorithm-based approach.	Soft Comput.	2006	DBLP DOI BibTeX RDF
1	Jason Weston, Christina S. Leslie, Eugene Ie, Dengyong Zhou, André Elisseeff, William Stafford Noble	Semi-supervised protein classification using cluster kernels.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Betty Lazareva-Ulitsky, Karen Diemer, Paul D. Thomas	On the quality of tree-based protein classification.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Orhan Çamoglu, Tolga Can, Ambuj K. Singh, Yuan-Fang Wang	Decision Tree Based Information Integration for Automated Protein Classification.	J. Bioinformatics and Computational Biology	2005	DBLP DOI BibTeX RDF
1	Aron Marchler-Bauer, John B. Anderson, Praveen F. Cherukuri, Carol DeWeese-Scott, Lewis Y. Geer, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Gabriele H. Marchler, Mikhail Mullokandov, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant	CDD: a Conserved Domain Database for protein classification.	Nucleic Acids Research	2005	DBLP DOI BibTeX RDF
1	Koji Tsuda, Hyunjung Shin, Bernhard Schölkopf	Fast protein classification with multiple networks.	ECCB/JBI	2005	DBLP DOI BibTeX RDF
1	Denise Fukumi Tsunoda, Heitor Silvério Lopes, Alex Alves Freitas	An Evolutionary Approach for Motif Discovery and Transmembrane Protein Classification.	EvoWorkshops	2005	DBLP DOI BibTeX RDF
1	Vered Kunik, Zach Solan, Shimon Edelman, Eytan Ruppin, David Horn	Motif Extraction and Protein Classification.	CSB	2005	DBLP DOI BibTeX RDF	motif extraction, enzyme classification
1	Scott F. Smith 0002	Searching for protein classification features.	Congress on Evolutionary Computation	2005	DBLP DOI BibTeX RDF
1	Miguel Angel Lozano, Francisco Escolano	Protein Classification with Kernelized Softassign.	GbRPR	2005	DBLP DOI BibTeX RDF
1	Petros Daras, Dimitrios Zarpalas, Dimitrios Tzovaras, Michael G. Strintzis	3D shape-based techniques for protein classification.	ICIP	2005	DBLP DOI BibTeX RDF
1	Koji Tsuda	Propagating distributions on a hypergraph by dual information regularization.	ICML	2005	DBLP DOI BibTeX RDF
1	Feng Gao, Mohammed Javeed Zaki	PSIST: Indexing Protein Structures Using Suffix Trees.	CSB	2005	DBLP DOI BibTeX RDF
1	Thomas E. Merryman, Jelena Kovacevic	An Adaptive Multirate Algorithm for Acquisition of Fluorescence Microscopy Data Sets.	IEEE Transactions on Image Processing	2005	DBLP DOI BibTeX RDF
1	Leon French, Alioune Ngom, Luis Rueda	Fast Protein Superfamily Classification Using Principal Component Null Space Analysis.	Canadian Conference on AI	2005	DBLP DOI BibTeX RDF
1	Pedro Gabriel Ferreira, Paulo J. Azevedo	Protein Sequence Classification Through Relevant Sequence Mining and Bayes Classifiers.	EPIA	2005	DBLP DOI BibTeX RDF
1	Christophe Dessimoz, Gina Cannarozzi, Manuel Gil, Daniel Margadant, Alexander C. J. Roth, Adrian Schneider, Gaston H. Gonnet	OMA, A Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements.	Comparative Genomics	2005	DBLP DOI BibTeX RDF
1	Alexander Kister	The Main Structural Regularities of the Sandwich Proteins.	WABI	2005	DBLP DOI BibTeX RDF
1	Drew Lett, Michael Hsing, Frederic Pio	Interaction profile-based protein classification of death domain.	BMC Bioinformatics	2004	DBLP DOI BibTeX RDF
1	R. B. Vilim, R. M. Cunningham, B. Lu, P. Kheradpour, Fred J. Stevens	Fold-specific substitution matrices for protein classification.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Christina S. Leslie, Eleazar Eskin, Adiel Cohen, Jason Weston, William Stafford Noble	Mismatch string kernels for discriminative protein classification.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Yoshiharu Hayashi, Mime Kobayashi, Katsuyoshi Sakaguchi, Nao Iwata, Masaki Kobayashi, Yo Kikuchi, Yoshimasa Takahashi	Protein Classification Using Comparative Molecular Interaction Profile Analysis System.	J. Bioinformatics and Computational Biology	2004	DBLP DOI BibTeX RDF
1	Johann Lenffer, Paulo Lai, Wafaa El Mejaber, Asif M. Khan, Judice L. Y. Koh, Paul T. J. Tan, Seng Hong Seah, Vladimir Brusic	CysView: protein classification based on cysteine pairing patterns.	Nucleic Acids Research	2004	DBLP DOI BibTeX RDF
1	Francisca Zanoguera, Massimo de Francesco	Protein Classification into Domains of Life Using Markov Chain Models.	CSB	2004	DBLP DOI BibTeX RDF
1	Zhaohui Sun, Jitender S. Deogun	Local Prediction Approach of Protein Classification using Probabilistic Suffix Trees.	APBC	2004	DBLP BibTeX RDF
1	Martin Chew Wooi Keat, Rosni Abdullah, Rosalina Abdul Salam, Aishah Abdul Latif	Weightless Neural Network Array for Protein Classification.	PDCAT	2004	DBLP DOI BibTeX RDF
1	Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jack Snoeyink, Jan Prins, Alexander Tropsha	Mining protein family specific residue packing patterns from protein structure graphs.	RECOMB	2004	DBLP DOI BibTeX RDF	almost-delaunay, subgraph mining, protein classification
1	Jérôme Mikolajczak, Gérard Ramstein, Yannick Jacques	SVM-Based Classification of Distant Proteins Using Hierarchical Motifs.	IDEAL	2004	DBLP DOI BibTeX RDF