| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Rosemary Dickin, Chris James Hall, Laura K. Taylor, Andrew M. Collings, Ruth Nussinov, Philip E. Bourne |
A Review of 2011 for PLoS Computational Biology.  |
PLoS Computational Biology  |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Elif Nihal Korkmaz, Ruth Nussinov, Türkan Haliloglu |
Conformational Control of the Binding of the Transactivation Domain of the MLL Protein and c-Myb to the KIX Domain of CREB. |
PLoS Computational Biology |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Augustin Luna, Evrim I. Karac, Margot Sunshine, Lucas Chang, Ruth Nussinov, Mirit I. Aladjem, Kurt W. Kohn |
A Formal MIM Specification and Tools for the Common Exchange of MIM Diagrams: an XML-Based Format, an API, and a Validation Method. |
BMC Bioinformatics |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Ilona Kifer, Ruth Nussinov, Haim J. Wolfson |
GOSSIP: a method for fast and accurate global alignment of protein structures. |
Bioinformatics |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Yongping Pan, Ruth Nussinov |
The Role of Response Elements Organization in Transcription Factor Selectivity: The IFN-β Enhanceosome Example. |
PLoS Computational Biology |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Rosemary Dickin, Cecy Marden, Andrew M. Collings, Ruth Nussinov, Philip E. Bourne |
A Review of 2010 for PLoS Computational Biology. |
PLoS Computational Biology |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | David Curcó, David Zanuy, Ruth Nussinov, Carlos Alemán |
A simulation strategy for the atomistic modeling of flexible molecules covalently tethered to rigid surfaces: Application to peptides. |
Journal of Computational Chemistry |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Melda Tozluoglu, Ezgi Karaca, Ruth Nussinov, Türkan Haliloglu |
A Mechanistic View of the Role of E3 in Sumoylation. |
PLoS Computational Biology |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Yongping Pan, Ruth Nussinov |
Lysine120 Interactions with p53 Response Elements can Allosterically Direct p53 Organization. |
PLoS Computational Biology |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson |
FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking. |
Nucleic Acids Research |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov |
CCRXP: exploring clusters of conserved residues in protein structures. |
Nucleic Acids Research |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Jin Liu, Ruth Nussinov |
The Mechanism of Ubiquitination in the Cullin-RING E3 Ligase Machinery: Conformational Control of Substrate Orientation. |
PLoS Computational Biology |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Yongping Pan, Ruth Nussinov |
Cooperativity Dominates the Genomic Organization of p53-Response Elements: A Mechanistic View. |
PLoS Computational Biology |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson |
RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases. |
Nucleic Acids Research |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gürsoy, Ruth Nussinov |
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. |
Briefings in Bioinformatics |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson |
Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules. |
Journal of Computational Biology |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson |
FireDock: a web server for fast interaction refinement in molecular docking. |
Nucleic Acids Research |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Eitan Yaffe, Dan Fishelovitch, Haim J. Wolfson, Dan Halperin, Ruth Nussinov |
MolAxis: a server for identification of channels in macromolecules. |
Nucleic Acids Research |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson |
PharmaGist: a webserver for ligand-based pharmacophore detection. |
Nucleic Acids Research |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson |
MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions. |
Nucleic Acids Research |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Ruth Nussinov, Tao Ju, Talapady Bhat, Jack Snoeyink, Karthik Ramani |
Bio-geometry: challenges, approaches, and future opportunities in proteomics and drug discovery. |
Symposium on Solid and Physical Modeling |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Zengjian Hu, Donnell Bowen, William M. Southerland, Antonio del Sol, Yongping Pan, Ruth Nussinov, Buyong Ma |
Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR. |
PLoS Computational Biology |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Keren Lasker, Oranit Dror, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson |
EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM Maps. |
IEEE/ACM Trans. Comput. Biology Bioinform. |
2007 |
DBLP DOI BibTeX RDF |
intermediate resolution cryo-EM maps, 3D alignment of secondary structures, macromolecular assemblies, cyclic symmetry, Structural bioinformatics |
| 1 | Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson |
Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. |
RECOMB |
2007 |
DBLP DOI BibTeX RDF |
Computer-Aided Drug Design (CADD), Rational Drug Discovery, 3D Molecular Similarity, 3D Molecular Superposition |
| 1 | Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov |
A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. |
Bioinformatics |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson |
The Multiple Common Point Set Problem and Its Application to Molecule Binding Pattern Detection. |
Journal of Computational Biology |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Chung-Jung Tsai, Jie Zheng, Ruth Nussinov |
Designing a Nanotube Using Naturally Occurring Protein Building Blocks. |
PLoS Computational Biology |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Oranit Dror, Ruth Nussinov, Haim J. Wolfson |
The ARTS web server for aligning RNA tertiary structures. |
Nucleic Acids Research |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Yuval Inbar, Haim J. Wolfson, Ruth Nussinov |
Multiple Docking for Protein Structure Prediction. |
I. J. Robotic Res. |
2005 |
DBLP BibTeX RDF |
|
| 1 | Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy |
PRISM: protein interactions by structural matching. |
Nucleic Acids Research |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson |
SiteEngines: recognition and comparison of binding sites and protein-protein interfaces. |
Nucleic Acids Research |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson |
PatchDock and SymmDock: servers for rigid and symmetric docking. |
Nucleic Acids Research |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Oranit Dror, Ruth Nussinov, Haim J. Wolfson |
ARTS: alignment of RNA tertiary structures. |
ECCB/JBI |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson |
MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces. |
CompLife |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Keren Lasker, Oranit Dror, Ruth Nussinov, Haim J. Wolfson |
Discovery of Protein Substructures in EM Maps. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
intermediate resolution cryo EM maps, 3D alignment of secondary structures, macromolecular assemblies, Structural bioinformatics |
| 1 | Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson |
Recognition of Binding Patterns Common to a Set of Protein Structures. |
RECOMB |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson |
FlexProt: Alignment of Flexible Protein Structures Without a Predefinition of Hinge Regions. |
Journal of Computational Biology |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxim Shatsky, Oranit Dror, Dina Schneidman-Duhovny, Ruth Nussinov, Haim J. Wolfson |
BioInfo3D: a suite of tools for structural bioinformatics. |
Nucleic Acids Research |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson |
Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Yuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson |
Protein structure prediction via combinatorial assembly of sub-structural units. |
ISMB (Supplement of Bioinformatics) |
2003 |
DBLP BibTeX RDF |
|
| 1 | Oranit Dror, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson |
MASS: multiple structural alignment by secondary structures. |
ISMB (Supplement of Bioinformatics) |
2003 |
DBLP BibTeX RDF |
|
| 1 | Dina Duhovny, Ruth Nussinov, Haim J. Wolfson |
Efficient Unbound Docking of Rigid Molecules. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson |
MultiProt - A Multiple Protein Structural Alignment Algorithm. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Nathaniel Leibowitz, Ruth Nussinov, Haim J. Wolfson |
MUSTA - A General, Efficient, Automated Method for Multiple Structure Alignment and Detection of Common Motifs: Application to Proteins. |
Journal of Computational Biology |
2001 |
DBLP BibTeX RDF |
|
| 1 | Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov |
Protein flexibility and electrostatic interactions. |
IBM Journal of Research and Development |
2001 |
DBLP BibTeX RDF |
|
| 1 | Chung-Jung Tsai, Buyong Ma, Yuk Yin Sham, Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov |
A hierarchical, building-block-based computational scheme for protein structure prediction. |
IBM Journal of Research and Development |
2001 |
DBLP BibTeX RDF |
|
| 1 | Maxim Shatsky, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson |
Alignment of Flexible Protein Structures. |
ISMB |
2000 |
DBLP BibTeX RDF |
|
| 1 | Nathaniel Leibowitz, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson |
Multiple Structural Alignment and Core Detection by Geometric Hashing. |
ISMB |
1999 |
DBLP BibTeX RDF |
|
| 1 | Bilha Sandak, Ruth Nussinov, Haim J. Wolfson |
A Method for Biomolecular Structural Recognition and Docking Allowing Conformational Flexibility. |
Journal of Computational Biology |
1998 |
DBLP BibTeX RDF |
|
| 1 | Ruth Nussinov, Raquel Norel, Bilha Sandak, George Verbitsky, Haim J. Wolfson |
[Invited Lecture] Structural motifs in the interior and on the surfaces of protein monomers and at protein-protein interfaces. |
German Conference on Bioinformatics |
1998 |
DBLP BibTeX RDF |
|
| 1 | Bilha Sandak, Ruth Nussinov, Haim J. Wolfson |
Docking of Conformationally Flexible Proteins. |
CPM |
1996 |
DBLP DOI BibTeX RDF |
|
| 1 | Bilha Sandak, Ruth Nussinov, Haim J. Wolfson |
An automated computer vision and robotics-based technique for 3-D flexible biomolecular docking and matching. |
Computer Applications in the Biosciences |
1995 |
DBLP DOI BibTeX RDF |
|
| 1 | Daniel Fischer, Raquel Norel, Ruth Nussinov, Haim J. Wolfson |
3-D Docking of Protein Molecules. |
CPM |
1993 |
DBLP DOI BibTeX RDF |
|
| 1 | Daniel Fischer, Ruth Nussinov, Haim J. Wolfson |
3-D Substructure Matching in Protein Molecules. |
CPM |
1992 |
DBLP DOI BibTeX RDF |
|
| 1 | Ruth Nussinov |
Signals in DNA sequences and their potential properties. |
Computer Applications in the Biosciences |
1991 |
DBLP DOI BibTeX RDF |
|
| 1 | Ruth Nussinov |
Compositional variations in DNA sequences. |
Computer Applications in the Biosciences |
1991 |
DBLP DOI BibTeX RDF |
|
| 1 | Shu-Yun Le, J. Owens, Ruth Nussinov, Jih-H. Chen, Bruce A. Shapiro, Jacob V. Maizel |
RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. |
Computer Applications in the Biosciences |
1989 |
DBLP DOI BibTeX RDF |
|
| 1 | Shu-Yun Le, Jih-H. Chen, Ruth Nussinov, Jacob V. Maizel |
An improved secondary structure computation method and its application to intervening sequence in the human alpha-likeglobin mRNA precursors. |
Computer Applications in the Biosciences |
1988 |
DBLP DOI BibTeX RDF |
|
| 1 | Gad M. Landau, Uzi Vishkin, Ruth Nussinov |
Locating alignments with k differences for nucleotide and amino acid sequences. |
Computer Applications in the Biosciences |
1988 |
DBLP DOI BibTeX RDF |
|
| 1 | J. Owens, D. Chatterjee, Ruth Nussinov, Andrzej K. Konopka, Jacob V. Maizel |
A fixed-point alignment technique for detection of recurrent and common sequence motifs associated with biological features. |
Computer Applications in the Biosciences |
1988 |
DBLP DOI BibTeX RDF |
|
| 1 | Bruce A. Shapiro, Ruth Nussinov, Lewis E. Lipkin, Jacob V. Maizel |
A sequence analysis system encompassing rules for DNA helical distortion. |
Nucleic Acids Research |
1986 |
DBLP DOI BibTeX RDF |
|
| 1 | Gad M. Landau, Uzi Vishkin, Ruth Nussinov |
An efficient string matching algorithm with k differences for nucleotide and amino acid sequences. |
Nucleic Acids Research |
1986 |
DBLP DOI BibTeX RDF |
|
| 1 | Eliahu Comay, Ruth Nussinov, Oded Comay |
An accelerated algorithm for calculating the secondary structure of single stranded RNAs. |
Nucleic Acids Research |
1984 |
DBLP DOI BibTeX RDF |
|
| 1 | Ruth Nussinov, I. Tinoco Jr., A. B. Jacobson |
Small changes in free energy assignments for unpaired bases do not affect predicted secondary structures in single stranded RNA. |
Nucleic Acids Research |
1982 |
DBLP DOI BibTeX RDF |
|
| 1 | Ruth Nussinov, I. Tinoco Jr., A. B. Jacobson |
Secondary structure model for the complete simian virus 50 late precursor mRNA. |
Nucleic Acids Research |
1982 |
DBLP DOI BibTeX RDF |
|
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