| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Xiao Yang, Florian Sikora, Guillaume Blin, Sylvie Hamel, Romeo Rizzi, Srinivas Aluru |
An Algorithmic View on Multi-Related-Segments: A Unifying Model for Approximate Common Interval.  |
TAMC  |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru |
Invited: Reverse engineering whole-genome networks. |
ICCABS |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru |
Workshop: Taxonomic clustering of large-scale metagnomic data. |
ICCABS |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Abhinav Sarje, Jaroslaw Zola, Srinivas Aluru |
Accelerating Pairwise Computations on Cell Processors. |
IEEE Trans. Parallel Distrib. Syst. |
2011 |
DBLP DOI BibTeX RDF |
computations on matrices, pairwise computations, multicore/single-chip multiprocessors, Parallel algorithms, cell broadband engine, heterogeneous (hybrid) systems |
| 1 | Jaroslaw Zola, Srinivas Aluru |
Systems Biology, Network Inference in. |
Encyclopedia of Parallel Computing |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru |
Bioinformatics. |
Encyclopedia of Parallel Computing |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiao Yang, Jaroslaw Zola, Srinivas Aluru |
Parallel Metagenomic Sequence Clustering Via Sketching and Maximal Quasi-clique Enumeration on Map-Reduce Clouds. |
IPDPS |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Ananth Kalyanaraman, Srinivas Aluru, David A. Bader |
HiCOMB Introduction. |
IPDPS Workshops |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Olga Nikolova, Srinivas Aluru |
Parallel Discovery of Direct Causal Relations and Markov Boundaries with Applications to Gene Networks. |
ICPP |
2011 |
DBLP DOI BibTeX RDF |
constraint-based learning, Markov boundaries, Bayesian networks, causal relations |
| 1 | Srinivas Aluru, Sanghamitra Bandyopadhyay, Ümit V. Çatalyürek, Devdatt P. Dubhashi, Phillip H. Jones, Manish Parashar, Bertil Schmidt (eds.) |
Contemporary Computing - 4th International Conference, IC3 2011, Noida, India, August 8-10, 2011. Proceedings |
IC3 |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Aditya Varma, Abhiram Ranade, Srinivas Aluru |
An improved maximum likelihood formulation for accurate genome assembly. |
ICCABS |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiao Yang, Karin S. Dorman, Srinivas Aluru |
Workshop: Flexible read decomposition for improved short read error correction. |
ICCABS |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiao Yang, Karin S. Dorman, Srinivas Aluru |
Reptile: representative tiling for short read error correction. |
Bioinformatics |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Jaroslaw Zola, Maneesha Aluru, Abhinav Sarje, Srinivas Aluru |
Parallel Information-Theory-Based Construction of Genome-Wide Gene Regulatory Networks. |
IEEE Trans. Parallel Distrib. Syst. |
2010 |
DBLP DOI BibTeX RDF |
Parallel algorithms, biology and genetics |
| 1 | André Wehe, Wen-Chieh Chang 0002, Oliver Eulenstein, Srinivas Aluru |
A scalable parallelization of the gene duplication problem. |
J. Parallel Distrib. Comput. |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | George Karypis, Srinivas Aluru, David A. Bader |
Message from the workshop chairs. |
IPDPS Workshops |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Benjamin G. Jackson, Matthew Regennitter, Xiao Yang, Patrick S. Schnable, Srinivas Aluru |
Parallel de novo assembly of large genomes from high-throughput short reads. |
IPDPS |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Abhinav Sarje, Srinivas Aluru |
Parallel applications employing pairwise computations on emerging architectures. |
IPDPS Workshops |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | William Sarje, Srinivas Aluru |
A MapReduce Style Framework for Computations on Trees. |
ICPP |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiao Yang, Srinivas Aluru |
An Improved Model for Gene Cluster Inference. |
BICoB |
2010 |
DBLP BibTeX RDF |
|
| 1 | Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru |
Parallel short sequence assembly of transcriptomes. |
BMC Bioinformatics |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Abhinav Sarje, Srinivas Aluru |
Parallel Genomic Alignments on the Cell Broadband Engine. |
IEEE Trans. Parallel Distrib. Syst. |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Olga Nikolova, Jaroslaw Zola, Srinivas Aluru |
A parallel algorithm for exact Bayesian network inference. |
HiPC |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Melapudi Vikram, Andrew Baczewzki, B. Shanker, Srinivas Aluru |
Parallel accelerated cartesian expansions for particle dynamics simulations. |
IPDPS |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Jaroslaw Zola, Abhinav Sarje, Srinivas Aluru |
Constructing Gene Regulatory Networks on Clusters of Cell Processors. |
ICPP |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Sanjay Ranka, Srinivas Aluru, Rajkumar Buyya, Yeh-Ching Chung, Sumeet Dua, Ananth Grama, Sandeep K. S. Gupta, Rajeev Kumar, Vir V. Phoha (eds.) |
Contemporary Computing - Second International Conference, IC3 2009, Noida, India, August 17-19, 2009. Proceedings |
IC3 |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru |
Assembly of Large Genomes from Paired Short Reads. |
BICoB |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew D. Johnson, Daniel Janies, Alexandros Stamatakis |
Large-scale phylogenetic analysis on current HPC architectures. |
Scientific Programming |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | David A. Bader, Srinivas Aluru |
High-performance computational biology. |
Parallel Computing |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru |
Consensus Genetic Maps as Median Orders from Inconsistent Sources. |
IEEE/ACM Trans. Comput. Biology Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
Genetic map, median order, path and circuit problems, Kemeny distance, symmetric difference distance |
| 1 | Srinivas Aluru |
Text Indexing. |
Encyclopedia of Algorithms |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Jaroslaw Zola, Maneesha Aluru, Srinivas Aluru |
Parallel Information Theory Based Construction of Gene Regulatory Networks. |
HiPC |
2008 |
DBLP DOI BibTeX RDF |
parallel computational biology, mutual information, systems biology, gene networks |
| 1 | Abhinav Sarje, Srinivas Aluru |
Parallel biological sequence alignments on the Cell Broadband Engine. |
IPDPS |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Sudip Seal, Michael Moody, Anna Ceguerra, Simon Ringer, Krishna Rajan, Srinivas Aluru |
Tracking Nanostructural Evolution in Alloys: Large-Scale Analysis of Atom Probe Tomography Data on Blue Gene/L. |
ICPP |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Benjamin G. Jackson, Srinivas Aluru |
Parallel Construction of Bidirected String Graphs for Genome Assembly. |
ICPP |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Andrew Janowczyk, Sharat Chandran, Srinivas Aluru |
Fast, Processor-Cardinality Agnostic PRNG with a Tracking Application. |
ICVGIP |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Anantharaman Kalyanaraman, Scott J. Emrich, Patrick S. Schnable, Srinivas Aluru |
Assembling genomes on large-scale parallel computers. |
J. Parallel Distrib. Comput. |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru, Manish Parashar, Ramamurthy Badrinath, Viktor K. Prasanna (eds.) |
High Performance Computing - HiPC 2007, 14th International Conference, Goa, India, December 18-21, 2007, Proceedings |
HiPC |
2007 |
DBLP BibTeX RDF |
|
| 1 | Michael Ott, Jaroslaw Zola, Alexandros Stamatakis, Srinivas Aluru |
Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L. |
SC |
2007 |
DBLP DOI BibTeX RDF |
IBM BlueGene/L, RAxML, maximum likelihood, phylogenetic inference |
| 1 | Scott J. Emrich, Anantharaman Kalyanaraman, Srinivas Aluru |
Massively parallel expressed sequence tag clustering. |
ISCA PDCS |
2007 |
DBLP BibTeX RDF |
|
| 1 | Jaroslaw Zola, Xiao Yang, Adrian Rospondek, Srinivas Aluru |
PARALLEL-TCOFFEE: A parallel multiple sequence aligner. |
ISCA PDCS |
2007 |
DBLP BibTeX RDF |
|
| 1 | Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman |
Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics. |
IPDPS |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru |
The Combinatorics of Sequencing the Corn Genome. |
COCOON |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Pang Ko, Srinivas Aluru |
Optimal Self-adjusting Trees for Dynamic String Data in Secondary Storage. |
SPIRE |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru, Nancy M. Amato, David A. Bader |
Editorial: Special Section on High-Performance Computational Biology. |
IEEE Trans. Parallel Distrib. Syst. |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Anantharaman Kalyanaraman, Srinivas Aluru |
Efficient Algorithms and Software for Detection of Full-length Ltr Retrotransposons. |
J. Bioinformatics and Computational Biology |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman |
M11 - High-performance computing methods for computational genomics. |
SC |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Sudip Seal, Srinivas Aluru |
Communication-aware Parallel Domain Decomposition using Space Filling Curves. |
ISCA PDCS |
2006 |
DBLP BibTeX RDF |
|
| 1 | Anantharaman Kalyanaraman, Scott J. Emrich, Patrick S. Schnable, Srinivas Aluru |
Assembling genomes on large-scale parallel computers. |
IPDPS |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Srikanta Tirthapura, Sudip Seal, Srinivas Aluru |
A Formal Analysis of Space Filling Curves for Parallel Domain Decomposition. |
ICPP |
2006 |
DBLP DOI BibTeX RDF |
parallel algorithms, probabilistic analysis, domain decomposition, space filling curves |
| 1 | Pang Ko, Srinivas Aluru |
Obtaining Provably Good Performance from Suffix Trees in Secondary Storage. |
CPM |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | Sudip Seal, Srikanth Komarina, Srinivas Aluru |
An optimal hierarchical clustering algorithm for gene expression data. |
Inf. Process. Lett. |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Bhanu Hariharan, Srinivas Aluru |
Efficient parallel algorithms and software for compressed octrees with applications to hierarchical methods. |
Parallel Computing |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Fatih Erdogan Sevilgen, Srinivas Aluru, Natsuhiko Futamura |
Parallel algorithms for tree accumulations. |
J. Parallel Distrib. Comput. |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Rama Sangireddy, Natsuhiko Futamura, Srinivas Aluru, Arun K. Somani |
Scalable, memory efficient, high-speed IP lookup algorithms. |
IEEE/ACM Trans. Netw. |
2005 |
DBLP DOI BibTeX RDF |
IP packet forwarding, address lookups, scalability, longest prefix matching, routing tables |
| 1 | Pang Ko, Srinivas Aluru |
Space efficient linear time construction of suffix arrays. |
J. Discrete Algorithms |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Benjamin G. Jackson, Srinivas Aluru, Patrick S. Schnable |
Consensus Genetic Maps: A Graph Theoretic Approach. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Anantharaman Kalyanaraman, Srinivas Aluru |
Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhenhui Shen, Srinivas Aluru, Srikanta Tirthapura |
Indexing for Subscription Covering in Publish-Subscribe Systems. |
ISCA PDCS |
2005 |
DBLP BibTeX RDF |
|
| 1 | David A. Bader, Srinivas Aluru |
Special Issue: High Performance Computational Biology. |
Concurrency - Practice and Experience |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Scott J. Emrich, Srinivas Aluru, Yan Fu, Tsui-Jung Wen, Mahesh Narayanan, Ling Guo, Daniel A. Ashlock, Patrick S. Schnable |
A strategy for assembling the maize (Zea mays L.) genome. |
Bioinformatics |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Stjepan Rajko, Srinivas Aluru |
Space and Time Optimal Parallel Sequence Alignments. |
IEEE Trans. Parallel Distrib. Syst. |
2004 |
DBLP DOI BibTeX RDF |
parallel algorithms, Computational biology, sequence alignments, space-efficient, parallel dynamic programming |
| 1 | Pang Ko, Mahesh Narayanan, Anantharaman Kalyanaraman, Srinivas Aluru |
Space-Conserving Optimal DNA-Protein Alignment . |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Meng-Shiou Wu, Ricky A. Kendall, Srinivas Aluru |
A tunable collective communication framework on a cluster of SMPS. |
Parallel and Distributed Computing and Networks |
2004 |
DBLP BibTeX RDF |
|
| 1 | Srinivas Aluru, Fatih Erdogan Sevilgen |
Efficient Methods for Database Storage and Retrieval Using Space-Filling Curves. |
ISCIS |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru, David A. Bader |
Guest Editor's Introduction: Special issue on high-performance computational biology. |
J. Parallel Distrib. Comput. |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru, Natsuhiko Futamura, Kishan Mehrotra |
Parallel biological sequence comparison using prefix computations. |
J. Parallel Distrib. Comput. |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang |
Parallel Syntenic Alignments. |
Parallel Processing Letters |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Stjepan Rajko, Srinivas Aluru |
Space and Time Optimal Parallel Sequence Alignments. |
ICPP |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Pang Ko, Srinivas Aluru |
Space Efficient Linear Time Construction of Suffix Arrays. |
CPM |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Natsuhiko Futamura, Srinivas Aluru, Desh Ranjan, Bhanu Hariharan |
Efficient Parallel Algorithms for Solvent Accessible Surface Area of Proteins. |
IEEE Trans. Parallel Distrib. Syst. |
2002 |
DBLP DOI BibTeX RDF |
accessible surface area, parallel algorithm, Monte Carlo, Computational biology, protein folding |
| 1 | Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang |
Parallel Syntenic Alignments. |
HiPC |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Bhanu Hariharan, Srinivas Aluru, Balasubramaniam Shanker |
A scalable parallel fast multipole method for analysis of scattering from perfect electrically conducting surfaces. |
SC |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Anantharaman Kalyanaraman, Srinivas Aluru, Suresh C. Kothari |
Parallel EST Clustering. (PDF / PS) |
IPDPS |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | David A. Bader, Srinivas Aluru |
Workshop Introduction. (PDF / PS) |
IPDPS |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Anantharaman Kalyanaraman, Srinivas Aluru, Suresh C. Kothari |
Space and Time Efficient Parallel Algorithms and Software for EST Clustering. (PDF / PS) |
ICPP |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Meng-Shiou Wu, Srinivas Aluru, Ricky A. Kendall |
Mixed Mode Matrix Multiplication. |
CLUSTER |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Bhanu Hariharan, Srinivas Aluru |
Efficient Parallel Algorithms and Software for Compressed Octrees with Applications to Hierarchical Methods. |
HiPC |
2001 |
DBLP DOI BibTeX RDF |
|
| 1 | Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka |
Parallel Construction of Multidimensional Binary Search Trees. |
IEEE Trans. Parallel Distrib. Syst. |
2000 |
DBLP DOI BibTeX RDF |
multidimensional binary search trees, parallel algorithms, parallel computers, hypercubes, meshes, k-d trees |
| 1 | Fatih Erdogan Sevilgen, Natsuhiko Futamura, Srinivas Aluru |
A Provably Optimal, Distribution-Independent Parallel Fast Multipole Method. (PDF / PS) |
IPDPS |
2000 |
DBLP DOI BibTeX RDF |
FMM, N-body problem, parallel algorithm, fast multipole method |
| 1 | Srinivas Aluru, Desh Ranjan, Natsuhiko Futamura |
A Parallel Monte Carlo Algorithm for Protein Accessible Surface Area Computation. |
HiPC |
1999 |
DBLP BibTeX RDF |
|
| 1 | Srinivas Aluru, Natsuhiko Futamura, Kishan Mehrotra |
Parallel Biological Sequence Comparison Using Prefix Computations. (PDF / PS) |
IPPS/SPDP |
1999 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru, Songrit Maneewongvatana |
A Practical Parallel Algorithm for Line Segment Visibility. |
PDPTA |
1999 |
DBLP BibTeX RDF |
|
| 1 | Srinivas Aluru, Fatih Erdogan Sevilgen |
Dynamic Compressed Hypertoctrees with Application to the N-Body Problem. |
FSTTCS |
1999 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru, John L. Gustafson, Gurpur M. Prabhu, Fatih Erdogan Sevilgen |
Distribution-Independent Hierarchical Algorithms for the N-body Problem. |
The Journal of Supercomputing |
1998 |
DBLP DOI BibTeX RDF |
Barnes-Hut Algorithm, Greengards Algorithm, N-body problem, quadtree, particle simulation |
| 1 | Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka |
Practical Algorithms for Selection on Coarse-Grained Parallel Computers. |
IEEE Trans. Parallel Distrib. Syst. |
1997 |
DBLP DOI BibTeX RDF |
median finding, parallel algorithms, load balancing, parallel computers, hypercubes, randomized algorithms, meshes, selection, Coarse-grained |
| 1 | Srinivas Aluru |
Lagged Fibonacci Random Number Generators for Distributed Memory Parallel Computers. |
J. Parallel Distrib. Comput. |
1997 |
DBLP DOI BibTeX RDF |
|
| 1 | John L. Gustafson, Srinivas Aluru |
Massively Parallel Searching for Better Algorithms or How to Do a Cross Product with Five Multiplications. |
Scientific Programming |
1996 |
DBLP BibTeX RDF |
|
| 1 | Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka |
Practical Algorithms for Selection on Coarse-Grained Parallel Computers. (PDF / PS) |
IPPS |
1996 |
DBLP DOI BibTeX RDF |
coarse-grained parallel computers, randomized algorithms, distributed memory systems, deterministic algorithms, deterministic algorithms, randomised algorithms, distributed memory parallel computers, CM-5 |
| 1 | Srinivas Aluru, Songrit Maneewongvatana |
Practical Paralle1 Algorithm for Constructing Line Arrangements. |
PDPTA |
1996 |
DBLP BibTeX RDF |
|
| 1 | Srinivas Aluru |
Parallel Additive Lagged Fibonacci Random Number Generators. |
International Conference on Supercomputing |
1996 |
DBLP DOI BibTeX RDF |
|
| 1 | Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka |
Parallel Construction of Multidimensional Binary Search Trees. |
International Conference on Supercomputing |
1996 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru |
Properties of Binomial Coefficients and Implications to Parallelizing Lagged Fibonacci Random Number Generators. |
ICPP |
1995 |
DBLP BibTeX RDF |
|
| 1 | Srinivas Aluru, Gurpur M. Prabhu, John L. Gustafson |
Truly distribution-independent algorithms for the N-body problem. |
SC |
1994 |
DBLP BibTeX RDF |
|
| 1 | Srinivas Aluru, John L. Gustafson |
A Massively Parallel Optimizer for Expression Evaluation. |
International Conference on Supercomputing |
1993 |
DBLP DOI BibTeX RDF |
|
| 1 | Srinivas Aluru, John L. Gustafson |
Subtle Issues of SIMD Tree Search. |
PARCO |
1993 |
DBLP BibTeX RDF |
|
| 1 | Srinivas Aluru, Gurpur M. Prabhu, John L. Gustafson |
A random number generator for parallel computers. |
Parallel Computing |
1992 |
DBLP DOI BibTeX RDF |
|
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