Search results for "Tandem repeats"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
4	Michael Sammeth, Jens Stoye	Comparing Tandem Repeats with Duplications and Excisions of Variable Degree.	IEEE/ACM Trans. Comput. Biology Bioinform.	2006	DBLP DOI BibTeX RDF	variable number of tandem repeats, repeat duplication history, pairwise alignment, dynamic programming, Sequence comparison, tandem repeats
3	Ydo Wexler, Zohar Yakhini, Yechezkel Kashi, Dan Geiger	Finding approximate tandem repeats in genomic sequences.	RECOMB	2004	DBLP DOI BibTeX RDF	DNA repeats, DNA satellites, teiresias, trf, pattern discovery, tandem repeats
2	Zhi-Zhong Chen, Lusheng Wang, Zhanyong Wang	Approximation Algorithms for Reconstructing the Duplication History of Tandem Repeats.	Algorithmica	2009	DBLP DOI BibTeX RDF	Duplication models, Approximation algorithms, Tandem repeats
2	Zhi-Zhong Chen, Lusheng Wang	Improved Approximation Algorithms for Reconstructing the History of Tandem Repeats.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	approximation algorithms, Computational biology
2	Haim Kaplan, Ely Porat, Nira Shafrir	Finding the Position of the k-Mismatch and Approximate Tandem Repeats.	SWAT	2006	DBLP DOI BibTeX RDF
2	Michael Sammeth, Thomas Weniger, Dag Harmsen, Jens Stoye	Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI).	WABI	2005	DBLP DOI BibTeX RDF
2	Chia-Hung Chang, Han-Yu Chuang, Yi-Hung Chiang, Chien-Shun Chiou, Hsueh-I Lu, Cheng-Yan Kao	Automatically Predicting Possible Loci of Variable Number of Tandem Repeats.	BIBE	2004	DBLP DOI BibTeX RDF
2	Richard Groult, Martine Léonard, Laurent Mouchard	Evolutive Tandem Repeats Using Hamming Distance.	MFCS	2002	DBLP DOI BibTeX RDF
1	Hong Luo, Ke Lin, Audrey David, Harm Nijveen, Jack A. M. Leunissen	ProRepeat: an integrated repository for studying amino acid tandem repeats in proteins.	Nucleic Acids Research	2012	DBLP DOI BibTeX RDF
1	Qingshan Jiang, Sheng Li, Shun Guo, Dan Wei	A New Model for Finding Approximate Tandem Repeats in DNA Sequences.	JSW	2011	DBLP DOI BibTeX RDF
1	Rong Jiang, Hong Yan	Detection and 2-Dimensional display of short tandem repeats based on signal decomposition.	IJDMB	2011	DBLP DOI BibTeX RDF
1	Osnat Ravid-Amir, Saharon Rosset	Maximum likelihood estimation of locus-specific mutation rates in Y-chromosome short tandem repeats.	Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Marco Pellegrini, M. Elena Renda, Alessio Vecchio	TRStalker: an efficient heuristic for finding fuzzy tandem repeats.	Bioinformatics [ISMB]	2010	DBLP DOI BibTeX RDF
1	José P. Lousado, José Luís Oliveira, Gabriela R. Moura, Manuel A. S. Santos	An Application for Studying Tandem Repeats in Orthologous Genes.	IWPACBB	2010	DBLP DOI BibTeX RDF
1	Atheer A. Matroud, Michael D. Hendy, Christopher P. Tuffley	An Algorithm to Solve the Motif Alignment Problem for Approximate Nested Tandem Repeats.	RECOMB-CG	2010	DBLP DOI BibTeX RDF
1	Julien Jorda, Andrey V. Kajava	T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Rafal Pokrzywa	Application of the Burrows-Wheeler Transform for searching for tandem repeats in DNA sequences.	IJBRA	2009	DBLP DOI BibTeX RDF
1	Hongxia Zhou, Liping Du, Hong Yan	Detection of Tandem Repeats in DNA Sequences Based on Parametric Spectral Estimation.	IEEE Transactions on Information Technology in Biomedicine	2009	DBLP DOI BibTeX RDF
1	Shintaro Hirayama, Satoshi Mizuta	Significant Deviations in the Configurations of Homologous Tandem Repeats in Prokaryotic Genomes.	Genomics, Proteomics & Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Angelika Merkel, Neil Gemmell	Detecting short tandem repeats from genome data: opening the software black box.	Briefings in Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Gregory Kucherov, Dina Sokol	Approximate Tandem Repeats.	Encyclopedia of Algorithms	2008	DBLP DOI BibTeX RDF
1	Avinash Shankaranarayanan, Christine Amaldas	TandemXP - A Computational Approach to Finding Approximate Tandem Repeats in Genomic Sequences.	BIOCOMP	2008	DBLP BibTeX RDF
1	Aaron M. Newman, James B. Cooper	XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Dina Sokol, Gary Benson, Justin Tojeira	Tandem repeats over the edit distance.	Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Nevzat Onur Domaniç, Franco P. Preparata	A Novel Approach to the Detection of Genomic Approximate Tandem Repeats in the Levenshtein Metric.	Journal of Computational Biology	2007	DBLP DOI BibTeX RDF
1	Yevgeniy Gelfand, Alfredo Rodriguez, Gary Benson	TRDB - The Tandem Repeats Database.	Nucleic Acids Research	2007	DBLP DOI BibTeX RDF
1	Lusheng Wang, Zhanyong Wang, Zhi-Zhong Chen	Approximation Algorithms for Reconstructing the Duplication History of Tandem Repeats.	COCOON	2007	DBLP DOI BibTeX RDF
1	Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski	A New Alignment-Independent Algorithm for Clustering Protein Sequences.	BIBE	2007	DBLP DOI BibTeX RDF
1	Valentina Boeva, Mireille Régnier, Dmitri A. Papatsenko, Vsevolod Makeev	Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Radhakrishnan Nagarajan, Meenakshi Upreti	Impact of Tandem repeats on the Scaling of nucleotide Sequences.	I. J. Bifurcation and Chaos	2006	DBLP DOI BibTeX RDF
1	Xiaowen Liu, Lusheng Wang	Finding the region of pseudo-periodic tandem repeats in biological sequences.	Algorithms for Molecular Biology	2006	DBLP DOI BibTeX RDF
1	Dina Sokol, Justin Tojeira	Filtering Tandem Repeats in DNA Sequences.	BIOCOMP	2006	DBLP BibTeX RDF
1	Nirmal Ranganathan, Cédric Feschotte, David Levine	Cluster and Grid Based Classification of Transposable Elements in Eukaryotic Genomes.	CCGRID	2006	DBLP DOI BibTeX RDF	In cluster, transposable elements, bioinformatics, distributed workflow
1	Mohamed Y. Eltabakh, Walid G. Aref, Mourad Ouzzani, Mohamed H. Ali	Discovering Consensus Patterns in Biological Databases.	VDMB	2006	DBLP DOI BibTeX RDF
1	T. Boby, A.-M. Patch, S. J. Aves	TRbase: a database relating tandem repeats to disease genes for the human genome.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Ydo Wexler, Zohar Yakhini, Yechezkel Kashi, Dan Geiger	Finding Approximate Tandem Repeats in Genomic Sequences.	Journal of Computational Biology	2005	DBLP DOI BibTeX RDF
1	Richard Groult, Martine Léonard, Laurent Mouchard	A Linear Algorithm for the Detection of Evolutive Tandem Repeats.	Journal of Automata, Languages and Combinatorics	2005	DBLP BibTeX RDF
1	France Denoeud, Gilles Vergnaud	Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains : a web-based resource.	BMC Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Richard Groult, Martine Léonard, Laurent Mouchard	Speeding up the detection of evolutive tandem repeats.	Theor. Comput. Sci.	2004	DBLP DOI BibTeX RDF
1	Eric Rivals	A Survey On Algorithmic Aspects Of Tandem Repeats Evolution.	Int. J. Found. Comput. Sci.	2004	DBLP DOI BibTeX RDF
1	Arun Krishnan, Francis Tang	Exhaustive whole-genome tandem repeats search.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Dan Gusfield, Jens Stoye	Linear time algorithms for finding and representing all the tandem repeats in a string.	J. Comput. Syst. Sci.	2004	DBLP DOI BibTeX RDF
1	Peter Leupold, Victor Mitrana, José M. Sempere	Formal Languages Arising from Gene Repeated Duplication.	Aspects of Molecular Computing	2004	DBLP DOI BibTeX RDF
1	Svante Janson, Stefano Lonardi, Wojciech Szpankowski	On the Average Sequence Complexity.	CPM	2004	DBLP DOI BibTeX RDF
1	Albert A. Conti, Tom Van Court, Martin C. Herbordt	Processing Repetitive Sequence Structures with Mismatches at Streaming Rate.	FPL	2004	DBLP DOI BibTeX RDF
1	Amihood Amir, Igor Nor	Generalized Function Matching.	ISAAC	2004	DBLP DOI BibTeX RDF
1	Valerio Parisi, Valeria De Fonzo, Filippo Aluffi-Pentini	STRING: finding tandem repeats in DNA sequences.	Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Marc Buchner, Suparerk Janjarasjitt	Detection and visualization of tandem repeats in DNA sequences.	IEEE Transactions on Signal Processing	2003	DBLP DOI BibTeX RDF
1	Roman M. Kolpakov, Ghizlane Bana, Gregory Kucherov	mreps: efficient and flexible detection of tandem repeats in DNA.	Nucleic Acids Research	2003	DBLP DOI BibTeX RDF
1	Vicente Arnau, Ignacio Marín	A Fast Algorithm for the Exhaustive Analysis of 12-Nucleotide-Long DNA Sequences. Applications to Human Genomics.	IPDPS	2003	DBLP DOI BibTeX RDF
1	Deep Jaitly, Paul E. Kearney, Guo-Hui Lin, Bin Ma	Methods for reconstructing the history of tandem repeats and their application to the human genome.	J. Comput. Syst. Sci.	2002	DBLP DOI BibTeX RDF
1	Amy M. Hauth, Deborah Joseph	Beyond tandem repeats: complex pattern structures and distant regions of similarity.	ISMB	2002	DBLP BibTeX RDF
1	Sèverine Bérard, Eric Rivals	Comparison of minisatellites.	RECOMB	2002	DBLP DOI BibTeX RDF	minisatellite, overlap graphs, dynamic programming, bioinformatics, evolution, alignment, sequence comparison, tandem repeats
1	Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch	The Enhanced Suffix Array and Its Applications to Genome Analysis.	WABI	2002	DBLP DOI BibTeX RDF
1	Ezekiel F. Adebiyi, Michael Kaufmann	Extracting Common Motifs under the Levenshtein Measure: Theory and Experimentation.	WABI	2002	DBLP DOI BibTeX RDF
1	Gad M. Landau, Jeanette P. Schmidt, Dina Sokol	An Algorithm for Approximate Tandem Repeats.	Journal of Computational Biology	2001	DBLP BibTeX RDF
1	Ezekiel F. Adebiyi, Tao Jiang, Michael Kaufmann	An efficient algorithm for finding short approximate non-tandem repeats.	ISMB (Supplement of Bioinformatics)	2001	DBLP BibTeX RDF
1	Li-Cheng Wu, Jorng-Tzong Horng, Feng-Mao Lin	An Approach to Finding Short Tandem Repeats in Complete Genomes.	German Conference on Bioinformatics	2001	DBLP BibTeX RDF
1	Gary Benson	Tandem Cyclic Alignment.	CPM	2001	DBLP BibTeX RDF
1	Marie-Christine Chaboissier, David Finnegan, Alain Bucheton	Retrotransposition of the I factor, a non-long terminal repeat retrotransposon of Drosophila, generates tandem repeats at the 3' end.	Nucleic Acids Research	2000	DBLP DOI BibTeX RDF
1	Alberto Apostolico, Stefano Lonardi	Compression of Biological Sequences by Greedy Off-Line Textual Substitution.	Data Compression Conference	2000	DBLP DOI BibTeX RDF
1	Gerth Stølting Brodal, Rune B. Lyngsø, Christian N. S. Pedersen, Jens Stoye	Finding Maximal Pairs with Bounded Gap.	CPM	1999	DBLP DOI BibTeX RDF
1	Gary Benson	An algorithm for finding tandem repeats of unspecified pattern size.	RECOMB	1998	DBLP DOI BibTeX RDF
1	Marie-France Sagot, Eugene W. Myers	Identifying satellites in nucleic acid sequences.	RECOMB	1998	DBLP DOI BibTeX RDF	DNA satellites, consensus model, approximate match, tandem repeats
1	Eric Rivals, Olivier Delgrange, Jean-Paul Delahaye, Max Dauchet, Marie-Odile Delorme, Alain Hénaut, Emmanuelle Ollivier	Detection of significant patterns by compression algorithms: the case of approximate tandem repeats in DNA sequences.	Computer Applications in the Biosciences	1997	DBLP DOI BibTeX RDF
1	Gad M. Landau, Jeanette P. Schmidt	An Algorithm for Approximate Tandem Repeats.	CPM	1993	DBLP DOI BibTeX RDF
1	M. Hollis, J. Hindley	Satellite II DNA of human lymphocytes: tandem repeats of a simple sequenceelement.	Nucleic Acids Research	1988	DBLP DOI BibTeX RDF
1	J. A. Lloyd, S. S. Potter	Distinct subfamilies of primate L1Gg retroposons, with some elements carrying tandem repeats in the 5' region.	Nucleic Acids Research	1988	DBLP DOI BibTeX RDF
1	G. Levinson, G. A. Gutman	High frequencies of short frameshifts in poly-CA/TG tandem repeats borne by bacteriophage M13 in Escherichia coli K-12.	Nucleic Acids Research	1987	DBLP DOI BibTeX RDF