Search results for "William Stafford Noble"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Gabriel Cuellar-Partida, Fabian A. Buske, Robert C. McLeay, Tom Whitington, William Stafford Noble, Timothy L. Bailey	Epigenetic priors for identifying active transcription factor binding sites.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	William Stafford Noble, Michael J. MacCoss	Computational and Statistical Analysis of Protein Mass Spectrometry Data.	PLoS Computational Biology	2012	DBLP DOI BibTeX RDF
1	Zafer Aydin, Ajit Singh, Jeff Bilmes, William Stafford Noble	Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Orion J. Buske, Michael M. Hoffman, Nadia Ponts, Karine G. Le Roch, William Stafford Noble	Exploratory analysis of genomic segmentations with Segtools.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Charles E. Grant, Timothy L. Bailey, William Stafford Noble	FIMO: scanning for occurrences of a given motif.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Emi Tanaka, Timothy L. Bailey, Charles E. Grant, William Stafford Noble, Uri Keich	Improved similarity scores for comparing motifs.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Iain Melvin, Jason Weston, William Stafford Noble, Christina S. Leslie	Detecting Remote Evolutionary Relationships among Proteins by Large-Scale Semantic Embedding.	PLoS Computational Biology	2011	DBLP DOI BibTeX RDF
1	Yanjun Qi, William Stafford Noble	Protein Interaction Networks: Protein Domain Interaction and Protein Function Prediction.	Handbook of Statistical Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Zafer Aydin, John I. Murray, Robert H. Waterston, William Stafford Noble	Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Martial Hue, Michael Riffle, Jean-Philippe Vert, William Stafford Noble	Large-scale prediction of protein-protein interactions from structures.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Michael M. Hoffman, Orion J. Buske, William Stafford Noble	The Genomedata format for storing large-scale functional genomics data.	Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Xiaoyu Chen, Michael M. Hoffman, Jeff A. Bilmes, Jay R. Hesselberth, William Stafford Noble	A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data.	Bioinformatics [ISMB]	2010	DBLP DOI BibTeX RDF
1	Phaedra Agius, Aaron Arvey, William Chang, William Stafford Noble, Christina S. Leslie	High Resolution Models of Transcription Factor-DNA Affinities Improve In Vitro and In Vivo Binding Predictions.	PLoS Computational Biology	2010	DBLP DOI BibTeX RDF
1	Sheila M. Reynolds, Jeff A. Bilmes, William Stafford Noble	Learning a Weighted Sequence Model of the Nucleosome Core and Linker Yields More Accurate Predictions in Saccharomyces cerevisiae and Homo sapiens.	PLoS Computational Biology	2010	DBLP DOI BibTeX RDF
1	William Stafford Noble, Christina S. Leslie	Learning Models of Biological Sequences.	Encyclopedia of Machine Learning	2010	DBLP DOI BibTeX RDF
1	Sheila M. Reynolds, Zhiping Weng, Jeff A. Bilmes, William Stafford Noble	Predicting Nucleosome Positioning Using Multiple Evidence Tracks.	RECOMB	2010	DBLP DOI BibTeX RDF
1	Lukas Käll, John D. Storey, William Stafford Noble	QVALITY: non-parametric estimation of q-values and posterior error probabilities.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	John Hawkins, Charles E. Grant, William Stafford Noble, Timothy L. Bailey	Assessing phylogenetic motif models for predicting transcription factor binding sites.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Iain Melvin, Jason Weston, Christina S. Leslie, William Stafford Noble	RANKPROP: a web server for protein remote homology detection.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	William Stafford Noble	A Quick Guide to Organizing Computational Biology Projects.	PLoS Computational Biology	2009	DBLP DOI BibTeX RDF
1	Timothy L. Bailey, Mikael Bodén, Fabian A. Buske, Martin C. Frith, Charles E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William Stafford Noble	MEME SUITE: tools for motif discovery and searching.	Nucleic Acids Research	2009	DBLP DOI BibTeX RDF
1	Sheila M. Reynolds, Jeff A. Bilmes, William Stafford Noble	On the Relationship between DNA Periodicity and Local Chromatin Structure.	RECOMB	2009	DBLP DOI BibTeX RDF	DNA periodicity, nucleosome, dinucleotide, chromatin
1	Iain Melvin, Jason Weston, Christina S. Leslie, William Stafford Noble	Combining classifiers for improved classification of proteins from sequence or structure.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Heng Lian, William A. Thompson, Robert E. Thurman, John A. Stamatoyannopoulos, William Stafford Noble, Charles E. Lawrence	Automated mapping of large-scale chromatin structure in ENCODE.	Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Shobhit Gupta, Jonathan Dennis, Robert E. Thurman, Robert Kingston, John A. Stamatoyannopoulos, William Stafford Noble	Predicting Human Nucleosome Occupancy from Primary Sequence.	PLoS Computational Biology	2008	DBLP DOI BibTeX RDF
1	Jian Qiu, William Stafford Noble	Predicting Co-Complexed Protein Pairs from Heterogeneous Data.	PLoS Computational Biology	2008	DBLP DOI BibTeX RDF
1	Sheila M. Reynolds, Lukas Käll, Michael Riffle, Jeff A. Bilmes, William Stafford Noble	Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks.	PLoS Computational Biology	2008	DBLP DOI BibTeX RDF
1	Robert E. Thurman, William Stafford Noble, John A. Stamatoyannopoulos	Multi-Scale Correlations in Continuous Genomic Data.	Pacific Symposium on Biocomputing	2008	DBLP BibTeX RDF
1	Lukas Käll, John D. Storey, William Stafford Noble	Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry.	ECCB	2008	DBLP DOI BibTeX RDF
1	Nir Yosef, Roded Sharan, William Stafford Noble	Improved network-based identification of protein orthologs.	ECCB	2008	DBLP DOI BibTeX RDF
1	Aaron A. Klammer, Sheila M. Reynolds, Jeff A. Bilmes, Michael J. MacCoss, William Stafford Noble	Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification.	ISMB	2008	DBLP DOI BibTeX RDF
1	Jean-Philippe Vert, Jian Qiu, William Stafford Noble	A new pairwise kernel for biological network inference with support vector machines.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, William Stafford Noble, Christina S. Leslie	SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Gal Chechik, Christina S. Leslie, William Stafford Noble, Gunnar Rätsch, Quaid Morris, Koji Tsuda	NIPS workshop on New Problems and Methods in Computational Biology.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Nathan Day, Andrew Hemmaplardh, Robert E. Thurman, John A. Stamatoyannopoulos, William Stafford Noble	Unsupervised segmentation of continuous genomic data.	Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Jian Qiu, Martial Hue, Asa Ben-Hur, Jean-Philippe Vert, William Stafford Noble	A structural alignment kernel for protein structures.	Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Iain Melvin, Eugene Ie, Jason Weston, William Stafford Noble, Christina S. Leslie	Multi-class Protein Classification Using Adaptive Codes.	Journal of Machine Learning Research	2007	DBLP BibTeX RDF
1	Aaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William Stafford Noble	Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions.	RECOMB	2007	DBLP DOI BibTeX RDF	peptide identification, retention time, chromatography, machine learning, support vector regression, proteomics, Mass spectrometry
1	Jason Weston, Rui Kuang, Christina S. Leslie, William Stafford Noble	Protein Ranking by Semi-Supervised Network Propagation.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Asa Ben-Hur, William Stafford Noble	Choosing negative examples for the prediction of protein-protein interactions.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Darrin P. Lewis, Tony Jebara, William Stafford Noble	Support vector machine learning from heterogeneous data: an empirical analysis using protein sequence and structure.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Tobias P. Mann, Richard Humbert, John A. Stamatoyannopoulos, William Stafford Noble	Automated Validation of Polymerase Chain Reaction Amplicon Melting Curves.	J. Bioinformatics and Computational Biology	2006	DBLP DOI BibTeX RDF
1	Jean-Philippe Vert, Jian Qiu, William Stafford Noble	Metric learning pairwise kernel for graph inference	CoRR	2006	DBLP BibTeX RDF
1	Tobias P. Mann, William Stafford Noble	Efficient identification of DNA hybridization partners in a sequence database.	ISMB (Supplement of Bioinformatics)	2006	DBLP DOI BibTeX RDF
1	Darrin P. Lewis, Tony Jebara, William Stafford Noble	Nonstationary kernel combination.	ICML	2006	DBLP DOI BibTeX RDF
1	Rui Kuang, Jason Weston, William Stafford Noble, Christina S. Leslie	Motif-based protein ranking by network propagation.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Jason Weston, Christina S. Leslie, Eugene Ie, Dengyong Zhou, André Elisseeff, William Stafford Noble	Semi-supervised protein classification using cluster kernels.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Charles X. Ling, William Stafford Noble, Qiang Yang	Guest Editor's Introduction to the Special Issue: Machine Learning for Bioinformatics-Part 2.	IEEE/ACM Trans. Comput. Biology Bioinform.	2005	DBLP DOI BibTeX RDF
1	Charles X. Ling, William Stafford Noble, Qiang Yang	Guest Editors' Introduction to the Special Issue: Machine Learning for Bioinformatics - Part 1.	IEEE/ACM Trans. Comput. Biology Bioinform.	2005	DBLP DOI BibTeX RDF
1	Aaron A. Klammer, Christine C. Wu, Michael J. MacCoss, William Stafford Noble	Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra.	CSB	2005	DBLP DOI BibTeX RDF	charge state, machine learning, support vector machine, proteomics, mass spectrometry
1	Will Sheffler, Eli Upfal, John Sedivy, William Stafford Noble	A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays.	CSB	2005	DBLP DOI BibTeX RDF	support vector machine, microarrays, gene expression
1	Tobias P. Mann, Richard Humbert, John A. Stamatoyannopoulos, William Stafford Noble	Automated Validation of Polymerase Chain Reactions Using Amplicon Melting Curves.	CSB	2005	DBLP DOI BibTeX RDF
1	William Stafford Noble, Scott Kuehn, Robert E. Thurman, Man Yu, John A. Stamatoyannopoulos	Predicting the in vivo signature of human gene regulatory sequence.	ISMB (Supplement of Bioinformatics)	2005	DBLP DOI BibTeX RDF
1	Asa Ben-Hur, William Stafford Noble	Kernel methods for predicting protein-protein interactions.	ISMB (Supplement of Bioinformatics)	2005	DBLP DOI BibTeX RDF
1	Eugene Ie, Jason Weston, William Stafford Noble, Christina S. Leslie	Multi-class protein fold recognition using adaptive codes.	ICML	2005	DBLP DOI BibTeX RDF
1	Jean-Philippe Vert, Robert E. Thurman, William Stafford Noble	Kernels for gene regulatory regions.	NIPS	2005	DBLP BibTeX RDF
1	Gert R. G. Lanckriet, Tijl De Bie, Nello Cristianini, Michael I. Jordan, William Stafford Noble	A statistical framework for genomic data fusion.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Christina S. Leslie, Eleazar Eskin, Adiel Cohen, Jason Weston, William Stafford Noble	Mismatch string kernels for discriminative protein classification.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Wei Wu, William Stafford Noble	Genomic data visualization on the Web.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Paul Pavlidis, Ilan Wapinski, William Stafford Noble	Support vector machine classification on the web.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Gert R. G. Lanckriet, Minghua Deng, Nello Cristianini, Michael I. Jordan, William Stafford Noble	Kernel-Based Data Fusion and Its Application to Protein Function Prediction in Yeast.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
1	Koji Tsuda, William Stafford Noble	Learning kernels from biological networks by maximizing entropy.	ISMB/ECCB (Supplement of Bioinformatics)	2004	DBLP DOI BibTeX RDF
1	Paul Pavlidis, Qinghong Li, William Stafford Noble	The effect of replication on gene expression microarray experiments.	Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Paul Pavlidis, William Stafford Noble	Matrix2png: a utility for visualizing matrix data.	Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Shawn M. Gomez, William Stafford Noble, Andrey Rzhetsky	Learning to predict protein-protein interactions from protein sequences.	Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Jie Qin, Darrin P. Lewis, William Stafford Noble	Kernel hierarchical gene clustering from microarray expression data.	Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Eleazar Eskin, William Stafford Noble, Yoram Singer	Protein Family Classification Using Sparse Markov Transducers.	Journal of Computational Biology	2003	DBLP BibTeX RDF
1	Li Liao, William Stafford Noble	Combining Pairwise Sequence Similarity and Support Vector Machines for Detecting Remote Protein Evolutionary and Structural Relationships.	Journal of Computational Biology	2003	DBLP DOI BibTeX RDF
1	Timothy L. Bailey, William Stafford Noble	Searching for statistically significant regulatory modules.	ECCB	2003	DBLP BibTeX RDF
1	Jason Weston, Christina S. Leslie, Dengyong Zhou, André Elisseeff, William Stafford Noble	Semi-supervised Protein Classification Using Cluster Kernels.	NIPS	2003	DBLP BibTeX RDF
1	Eleazar Eskin, William Stafford Noble, Yoram Singer	Using Substitution Matrices to Estimate Probability Distributions for Biological Sequences.	Journal of Computational Biology	2002	DBLP BibTeX RDF
1	Paul Pavlidis, Jason Weston, Jinsong Cai, William Stafford Noble	Learning Gene Functional Classifications from Multiple Data Types.	Journal of Computational Biology	2002	DBLP BibTeX RDF
1	Bernhard Schölkopf, Jason Weston, Eleazar Eskin, Christina S. Leslie, William Stafford Noble	A Kernel Approach for Learning from Almost Orthogonal Patterns.	PKDD	2002	DBLP DOI BibTeX RDF
1	Paul Pavlidis, Darrin P. Lewis, William Stafford Noble	Exploring Gene Expression Data with Class Scores.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
1	Christina S. Leslie, Eleazar Eskin, William Stafford Noble	The Spectrum Kernel: A String Kernel for SVM Protein Classification.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
1	Bernhard Schölkopf, Jason Weston, Eleazar Eskin, Christina S. Leslie, William Stafford Noble	A Kernel Approach for Learning from almost Orthogonal Patterns.	ECML	2002	DBLP DOI BibTeX RDF
1	Li Liao, William Stafford Noble	Combining pairwise sequence similarity and support vector machines for remote protein homology detection.	RECOMB	2002	DBLP DOI BibTeX RDF
1	Christina S. Leslie, Eleazar Eskin, Jason Weston, William Stafford Noble	Mismatch String Kernels for SVM Protein Classification.	NIPS	2002	DBLP BibTeX RDF
1	Paul Pavlidis, Christopher Tang, William Stafford Noble	Classification of genes using probabilistic models of microarray expression profiles.	BIOKDD	2001	DBLP BibTeX RDF

Publications of "William Stafford Noble" ( http://dblp.L3S.de/Authors/William_Stafford_Noble )