| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Kris Popendorf, Yasubumi Sakakibara |
SAMSCOPE: an OpenGL-based real-time interactive scale-free SAM viewer.  |
Bioinformatics  |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Tsuyoshi Hachiya, Miho Uchida, Nobuyoshi Nagamine, Yohei Sugawara, Masahiro Yokota, Masaomi Nakamura, Kris Popendorf, Takashi Komori, Kengo Sato |
COPICAT: a software system for predicting interactions between proteins and chemical compounds. |
Bioinformatics |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Tomoya Tagami, Tsuyoshi Hachiya, Yasubumi Sakakibara |
Poster: In silico microarray algorithm: Accurate and fast taxonomic profiling from short read sequences. |
ICCABS |
2012 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Yongli Mi (eds.) |
DNA Computing and Molecular Programming - 16th International Conference, DNA 16, Hong Kong, China, June 14-17, 2010, Revised Selected Papers |
DNA |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Yusuke Nakagawa, Katsuyuki Yugi, Kenji Tsuge, Mitsuhiro Itaya, Hiroshi Yanagawa, Yasubumi Sakakibara |
Operon structure optimization by random self-assembly. |
Natural Computing |
2010 |
DBLP BibTeX RDF |
|
| 1 | Kengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara |
A Non-Parametric Bayesian Approach for Predicting RNA Secondary Structures. |
J. Bioinformatics and Computational Biology |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Probabilistic Context-Free Grammars. |
Encyclopedia of Machine Learning |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Yohei Okada, Kengo Sato, Yasubumi Sakakibara |
Improvement of Structure Conservation Index with Centroid Estimators. |
Pacific Symposium on Biocomputing |
2010 |
DBLP BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Development of a Bacteria Computer: From in silico Finite Automata to in vitro and in vivo. |
CiE |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Tsuyoshi Hachiya, Yasunori Osana, Kris Popendorf, Yasubumi Sakakibara |
Accurate identification of orthologous segments among multiple genomes. |
Bioinformatics |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Tsuyoshi Hachiya, Yasunori Osana, Kris Popendorf, Yasubumi Sakakibara |
Accurate identification of orthologous segments among multiple genomes. |
Bioinformatics |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Nobuyoshi Nagamine, Takayuki Shirakawa, Yusuke Minato, Kentaro Torii, Hiroki Kobayashi, Masaya Imoto, Yasubumi Sakakibara |
Integrating Statistical Predictions and Experimental Verifications for Enhancing Protein-Chemical Interaction Predictions in Virtual Screening. |
PLoS Computational Biology |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Kengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara |
A Non-parametric Bayesian Approach for Predicting RNA Secondary Structures. |
WABI |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara |
Directed acyclic graph kernels for structural RNA analysis. |
BMC Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama |
Software.ncrna.org: web servers for analyses of RNA sequences. |
Nucleic Acids Research |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Yusuke Nakagawa, Katsuyuki Yugi, Kenji Tsuge, Mitsuhiro Itaya, Hiroshi Yanagawa, Yasubumi Sakakibara |
Operon Structure Optimization by Random Self-assembly. |
DNA |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Nobuyoshi Nagamine, Yasubumi Sakakibara |
Statistical prediction of protein-chemical interactions based on chemical structure and mass spectrometry data. |
Bioinformatics |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Georgios Paliouras, Yasubumi Sakakibara |
Guest editorial to the special issue on grammatical inference. |
Machine Learning |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Kris Popendorf, Nana Ogawa, Kiyoshi Asai, Kengo Sato |
Stem Kernels for RNA Sequence Analyses. |
J. Bioinformatics and Computational Biology |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato |
Stem Kernels for RNA Sequence Analyses. |
BIRD |
2007 |
DBLP DOI BibTeX RDF |
stem kernel, SVM, secondary structure, RNA, string kernel |
| 1 | Yuji Kawada, Yasubumi Sakakibara |
Discriminative Detection of Cis-Acting Regulatory Variation From Location Data. |
APBC |
2006 |
DBLP BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Satoshi Kobayashi, Kengo Sato, Tetsuro Nishino, Etsuji Tomita (eds.) |
Grammatical Inference: Algorithms and Applications, 8th International Colloquium, ICGI 2006, Tokyo, Japan, September 20-22, 2006, Proceedings |
ICGI |
2006 |
DBLP BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Grammatical Inference in Bioinformatics. |
IEEE Trans. Pattern Anal. Mach. Intell. |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara |
Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures. |
Bioinformatics |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Development of a Bacteria Computer: From in silico Finite Automata to in virto AND in vivo. |
Bulletin of the EATCS |
2005 |
DBLP BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Learning context-free grammars using tabular representations. |
Pattern Recognition |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Kengo Sato, Yasubumi Sakakibara |
RNA secondary structural alignment with conditional random fields. |
ECCB/JBI |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Junna Kuramochi, Yasubumi Sakakibara |
Intensive In Vitro Experiments of Implementing and Executing Finite Automata in Test Tube. |
DNA |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Hirotaka Nakagawa, Kensaku Sakamoto, Yasubumi Sakakibara |
Development of an In Vivo Computer Based on Escherichia coli. |
DNA |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Yuji Kawada, Yasubumi Sakakibara |
Discriminative Discovery of Transcription Factor Binding Sites from Location Data. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Hiroshi Imai |
A DNA-Based Computational Model Using a Specific Type of Restriction Enzymes. |
Journal of Automata, Languages and Combinatorics |
2004 |
DBLP BibTeX RDF |
|
| 1 | Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara |
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Satoshi Kobayashi, Takashi Yokomori, Yasubumi Sakakibara |
An Algorithm for Testing Structure Freeness of Biomolecular Sequences. |
Aspects of Molecular Computing |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Georgios Paliouras, Yasubumi Sakakibara (eds.) |
Grammatical Inference: Algorithms and Applications, 7th International Colloquium, ICGI 2004, Athens, Greece, October 11-13, 2004, Proceedings |
ICGI |
2004 |
DBLP BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
DNA-based algorithms for learning Boolean formulae. |
Natural Computing |
2003 |
DBLP DOI BibTeX RDF |
population computation, weighted majority, DNA computing, massively parallel, Boolean formula, computational learning |
| 1 | Yasubumi Sakakibara, Takahiro Hohsaka |
In Vitro Translation-Based Computations. |
DNA |
2003 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Pair hidden Markov models on tree structures. |
ISMB (Supplement of Bioinformatics) |
2003 |
DBLP BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Hiroshi Imai |
A DNA-based Computational Model Using a Specific Type of Restriction Enzyme. |
DNA |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Takashi Yokomori, Yasubumi Sakakibara, Satoshi Kobayashi |
A Magic Pot : Self-assembly Computation Revisited. |
Formal and Natural Computing |
2002 |
DBLP DOI BibTeX RDF |
|
| 1 | Satoshi Kobayashi, Yasubumi Sakakibara |
Multiple splicing systems and the universal computability. |
Theor. Comput. Sci. |
2001 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Satoshi Kobayashi |
Sticker systems with complex structures. |
Soft Comput. |
2001 |
DBLP DOI BibTeX RDF |
Sticker system, DNA computing, Self-assembly, Secondary structure |
| 1 | Yasubumi Sakakibara |
Population Computation and Majority Inference in Test Tube. |
DNA |
2001 |
DBLP DOI BibTeX RDF |
|
| 1 | Satoshi Kobayashi, Yasubumi Sakakibara, Takashi Yokomori |
Approximate identification of finite elasticity. |
Where Mathematics, Computer Science, Linguistics and Biology Meet |
2001 |
DBLP BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Solving Computational Learning Problems of Boolean Formulae on DNA Computers. |
DNA Computing |
2000 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Hidenori Muramatsu |
Learning Context-Free Grammars from Partially Structured Examples. |
ICGI |
2000 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Claudio Ferretti |
Splicing on Tree-Like Structures. |
Theor. Comput. Sci. |
1999 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Mitsuhiro Kondo |
GA-based Learning of Context-Free Grammars using Tabular Representations. |
ICML |
1999 |
DBLP BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Recent Advances of Grammatical Inference. |
Theor. Comput. Sci. |
1997 |
DBLP DOI BibTeX RDF |
|
| 1 | Christoph Globig, Klaus P. Jantke, Steffen Lange, Yasubumi Sakakibara |
On Case Based Learnability of Language. |
New Generation Comput. |
1997 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Kazuo Misue, Takeshi Koshiba |
A machine learning approach to knowledge acquisitions from text databases. |
Int. J. Hum. Comput. Interaction |
1996 |
DBLP DOI BibTeX RDF |
|
| 1 | Mostefa Golea, Masahiro Matsuoka, Yasubumi Sakakibara |
Stochastic simple recurrent neural networks. |
ICGI |
1996 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Grammatical Inference: An Old and New Paradigm. |
ALT |
1995 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Michael Brown, Rebecca C. Underwood, I. Saira Mian, David Haussler |
Stochastic Context-Free Grammars for Modeling RN. |
HICSS |
1994 |
DBLP BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Michael Brown, Richard Hughey, I. Saira Mian, Kimmen Sjölander, Rebecca C. Underwood, David Haussler |
Recent Methods for RNA Modeling Using Stochastic Context-Free Grammars. |
CPM |
1994 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Klaus P. Jantke, Steffen Lange |
Learning Languages by Collecting Cases and Tuning Parameters. |
AII/ALT |
1994 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Noise-Tolerant Occam Algorithms and Their Applications to Learning Decision Trees. |
Machine Learning |
1993 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Efficient Learning of Context-Free Grammars from Positive Structural Examples |
Inf. Comput. |
1992 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara, Rani Siromoney |
A Noise Model on Learning Sets of Strings. |
COLT |
1992 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
On Learning from Queries and Counterexamples in the Presence of Noise. |
Inf. Process. Lett. |
1991 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Learning Context-Free Grammars from Structural Data in Polynomial Time. |
Theor. Comput. Sci. |
1990 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Inductive inference of logic programs based on algebraic semantics. |
New Generation Comput. |
1990 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Occam Algorithms for Learning From Noisy Examples. |
ALT |
1990 |
DBLP BibTeX RDF |
|
| 1 | Yuji Takada, Kunihiko Hiraishi, Yasubumi Sakakibara |
Exact Learning of Semilinear Sets. |
ALT |
1990 |
DBLP BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
An Efficient Learning of Context-Free Grammars for Bottom-Up Parsers. |
FGCS |
1988 |
DBLP BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Learning Context-Free Grammars from Structural Data in Polynomial Time. |
COLT |
1988 |
DBLP BibTeX RDF |
|
| 1 | Yasubumi Sakakibara |
Programming in Modal Logic: An Extension of PROLOG based on Modal Logic. |
LP |
1986 |
DBLP DOI BibTeX RDF |
|
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