Search results for "biology computing"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
2	Jens Gregor, Michael G. Thomason	Hybrid Pattern Recognition Using Markov Networks.	IEEE Trans. Pattern Anal. Mach. Intell.	1993	DBLP DOI BibTeX RDF	hybrid pattern recognition, learning strings, string-to-network alignments, structural characteristics, nonparametric decision-theoretic pattern classifiers, class membership, linear discriminant-function classifiers, maximum-likelihood classifier, string orientation, human banded chromosomes, pattern recognition, similarity measures, Markov processes, decision theory, biology computing, biology computing, nonparametric statistics, Markov networks, nearest-neighbor rule
1	Bhaskar DasGupta, Lusheng Wang	Biology Computing.	Wiley Encyclopedia of Computer Science and Engineering	2008	DBLP DOI BibTeX RDF
1	Emre H. Brookes, Rajendra V. Boppana, Borries Demeler	Biology - Computing large sparse multivariate optimization problems with an application in biophysics.	SC	2006	DBLP DOI BibTeX RDF
1	Brian Sturgeon, Damian McCourt, John Cowper, Fiona Palmer, Sally I. McClean, Werner Dubitzky	Can the Grid Help to Solve the Data Integration Problems in Molecular Biology?	CCGRID	2003	DBLP DOI BibTeX RDF
1	Jeffrey E. Boyd, James J. Little	Phase in Model-Free Perception of Gait. (PDF / PS)	Workshop on Human Motion	2000	DBLP DOI BibTeX RDF	model-free perception, periodic systems, model-free shape-of-motion phase analysis, phasor representation, limb pendulum-like motion, image sequences, image sequences, timing, biology computing, gait analysis, image motion analysis, human gait
1	Yang Song, Pietro Perona	A Computational Model for Motion Detection and Direction Discrimination in Humans. (PDF / PS)	Workshop on Human Motion	2000	DBLP DOI BibTeX RDF	direction discrimination, biological motion, joint probability density function, human motion perception, computer vision, learning (artificial intelligence), learning, probability, computational model, inference mechanisms, motion detection, biology computing, statistical inference, image motion analysis, psychophysics experiments, quantitative models
1	Alexandre G. de Brevern, Serge A. Hazout	Hybrid Protein Model (HPM): A Method to Compact Protein 3D-Structure Information and Physicochemical Properties. (PDF / PS)	SPIRE	2000	DBLP DOI BibTeX RDF	Hybrid Protein Model, protein 3D-structure, physicochemical properties, protein 1D-sequence, structural alphabet, unsupervised classifier, protein blocks, sequence information, amino acid residues, pattern matching, fuzzy model, biology computing, Bayesian approach, structural biology
1	Wolfgang F. Kraske, F. W. George III	VOXAR-All ATM Distributed Biomedical Visualization: 1) Local OC-3 Linked Workstation Cluster; 2) Remote OC-3 Linked 40 GFlops CRAY T3D MPP.	CBMS	1995	DBLP DOI BibTeX RDF	Cray computers, VOXAR-all ATM distributed biomedical visualization, local OC-3 linked workstation cluster, remote OC-3 linked Cray T3D MPP, extended AVS visualization capability, SUN SPARC 20 workstations, supercomputer complex, HiPPI-connected Cray YMP vector architecture, Cray T3D massively parallel processing architecture, ATM-switched SONET STS-3 link, AVS kernel, Cray YMP, process spawning, virtual shared memory protocol, T3D memory management hardware, TCP/IP sockets, physician's desktop, 3D spatial object representation, medical community, mosaic resource management, 40 GFLOPS, relational databases, asynchronous transfer mode, object-oriented databases, transport protocols, parallel machines, storage management, data visualisation, workstations, remote procedure calls, remote procedure calls, biology computing, network interfaces, medical computing, SONET, object-relational database management system, network resource management
1	Sridhar Hannenhalli, Pavel A. Pevzner	Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem).	FOCS	1995	DBLP DOI BibTeX RDF	evolution (biological), duality (mathematics), genomic distance problem, human-mouse evolution, multi chromosomal genomes, duality theorem, computable parameters, combinatorial properties, parsimonious rearrangement scenarios, comparative physical mapping data, genome rearrangement algorithm, ZOO FISH, mammalian evolution, pattern matching, sorting, polynomial time algorithm, string matching, set theory, genetics, biology computing, strings, polynomial algorithm, genomic rearrangements
1	Dimitris Margaritis, Steven Skiena	Reconstructing Strings from Substrings in Rounds.	FOCS	1995	DBLP DOI BibTeX RDF	string reconstruction, combinatorial bounds, substring queries, sequencing by hybridization, oligonucleotides, de novo sequencing, large DNA fragments, SBH, interaction, parallelism, pattern matching, string matching, DNA, biology computing, rounds, substrings
1	Tatsuya Akutsu, Kentaro Onizuka, Masato Ishikawa	New hashing techniques and their application to a protein structure database system.	HICSS	1995	DBLP DOI BibTeX RDF	protein structure database system, hash vector, fixed length fragment, three dimensional protein structure, true hash vectors, root mean square deviation, PDB data, PROTEIX, database management systems, database management system, file organisation, biology computing, proteins, protein structures, structural similarity, molecular configurations, molecular biophysics, hashing techniques
1	Minoru Asogawa, Yukiko Fujiwara, Akihiko Konagaya	A combination of a functional motif model and a structural motif model for a database validation.	HICSS	1995	DBLP DOI BibTeX RDF	functional motif model, structural motif model, database validation, leucine zipper motif, twisted alpha helix sequences, DNA binding site, alpha helix region, Swiss Protein database, helical structures, PDB database, neural network, hidden Markov models, HMM, hidden Markov model, database management systems, neural nets, DNA, genetics, biology computing, subsequence
1	Jürgen Brickmann, Wolfgang Heiden, Horst Vollhardt, Carl-Dieter Zachmann	New man-machine communication strategies in molecular modelling.	HICSS	1995	DBLP DOI BibTeX RDF	man-machine communication strategies, intermolecular interactions, attractive force, repulsive force, local hydrophobicity, surface topography, surface flexibility, molecular recognition, model scenarios, user interfaces, computer graphics, computer graphics, texture mapping, interactive systems, biology computing, chemistry, chemistry, correlation analysis, molecular modelling, chemistry computing, molecular surfaces, molecular surface, surface roughness, color coding, interactive computer graphics, molecular biophysics
1	Roger D. Chamberlain, Gregory D. Peterson, Mark A. Franklin, Michael A. Province	Genetic epidemiology, parallel algorithms, and workstation networks.	HICSS	1995	DBLP DOI BibTeX RDF	genetic epidemiology, Gemini/Almini library, routines, optimization routines, cost-effective parallel implementations, genetic epidemiological applications, performance, parallel algorithms, parallel algorithms, optimisation, local area networks, local area network, software performance evaluation, software libraries, subroutines, genetics, biology computing, cost-effective, workstation networks, nonlinear optimization problems, networked workstations
1	John S. Conery, Warner L. Peticolas, Thomas Rush III, Kesavan Shanmugam, Jose Dominguez	A parallel algorithm for calculating the potential energy in DNA.	HICSS	1995	DBLP DOI BibTeX RDF	bioelectric phenomena, potential energy, Dreiding force field, seven-term equation, bonded atoms, electrostatic interactions, nonbonded terms, MasPar MP-I, SGI workstation, long polymeric structure, deoxyribonucleic acid, parallel algorithms, parallel algorithm, execution time, DNA, DNA, biology computing, sequential program, molecule, molecular biophysics, data-parallel algorithm
1	Gordon M. Crippen	Intervals and the deduction of drug binding site models.	HICSS	1995	DBLP DOI BibTeX RDF	chemical structure, drug binding site models, binding affinities, common receptor macromolecule, receptor, energetic features, common binding site, chemical structures, pharmacophore, bioactive conformations, conformational flexibility, stereospecific binding, qualitative binding data, chemically similar ligands, biology computing, intervals, chemistry, deduction, geometric features, chemistry computing, computer algorithm, drugs
1	Gilbert Deléage, Christophe Geourjon	Intensive sequence comparisons to predict protein secondary structures. Integration into a software package: ANTHEPROT.	HICSS	1995	DBLP DOI BibTeX RDF	intensive sequence comparisons, ANTHEPROT, structural class assignment, self-optimised prediction method, SOPM, protein chains, 3-states description, secondary structure content, database, database management systems, biology computing, proteins, software packages, software package, correlation coefficients, secondary structure, chemistry computing, protein secondary structure prediction, amino acids
1	Herbert Edelsbrunner, Michael A. Facello, Ping Fu, Jie Liang	Measuring proteins and voids in proteins.	HICSS	1995	DBLP DOI BibTeX RDF	protein voids, space filling diagram, solvent accessible surface, metric properties, empty space, surface area contributions, 3-dimensional alpha complexes, inclusion-exclusion formulas, three dimensional alpha complexes, computational geometry, geometric models, diagrams, biology computing, proteins, proteins, chemistry, volume, chemistry computing, molecular surface, molecules, surface area
1	Valentina Di Francesco, Peter J. Munson, Jean Garnier	Use of multiple alignments in protein secondary structure prediction.	HICSS	1995	DBLP DOI BibTeX RDF	training datasets, homologous proteins, well-characterized prediction methods, jury method, quadratic-logistic method, related proteins, three state prediction, consensus predictions, gap-permissive positions, coil state, reduced noise, database, profiling, database management systems, COMBINE, biology computing, proteins, chemistry, secondary structure, prediction accuracy, chemistry computing, averaging, protein secondary structure prediction, multiple alignments
1	Janice I. Glasgow, Suzanne Fortier, Darrell Conklin	Knowledge representation tools for molecular scene analysis.	HICSS	1995	DBLP DOI BibTeX RDF	knowledge representation tools, molecular scene analysis, hybrid knowledge representation scheme, molecular knowledge base, protein information, knowledge representation, knowledge based systems, spatial reasoning, spatial reasoning, biology computing, proteins, molecular configurations
1	Mark Graves, Ellen R. Bergeman, Charles B. Lawrence	A graph-theoretic data model for genome mapping databases.	HICSS	1995	DBLP DOI BibTeX RDF	graph-theoretic data model, genome mapping databases, genome map databases, genomic data, genomic objects, mapping data, laboratory notebooks, data structures, graph theory, database management systems, genetics, biology computing, nodes, graph database, arcs
1	O. V. Kel, A. G. Romachenko, Alexander E. Kel, Andrey N. Naumochkin, Nikolay A. Kolchanov	Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes.	HICSS	1995	DBLP DOI BibTeX RDF	TRRD, transcription regulatory regions, eukaryotic genomes, TRRD database, structural functional organization, protein factors, transcription signals, eukaryotic genome, EMBL, EPD, TFD, TRANSFAC, human glycoprotein hormone gene, database, data structures, database management systems, medical information systems, genetics, biology computing, data representation, transcription regulation
1	Hajime Kitakami, Tadasu Shin-I, Kazuho Ikeo, Yoshihiro Ugawa, Naruya Saitou, Takashi Gojobori, Yoshio Tateno	YAMATO and ASUKA: DNA database management system.	HICSS	1995	DBLP DOI BibTeX RDF	DNA database management system, YAMATO, ASUKA, DDBJ, window interfaces, DDBJ-schema, single entry, Human Genome Project, flat file format, restructuring tool, tree search tool, taxonomy database, structured SQL-programming method, control flow language, SQL expression, SYBASE, DNA Data Bank of Japan, user interfaces, searching, query processing, relational databases, SQL, DNA, tree data structures, genetics, biology computing, relational database management system, relational schema
1	Marcella A. McClure, Rajasekhar Raman	Parameterization studies of hidden Markov models representing highly divergent protein sequences.	HICSS	1995	DBLP DOI BibTeX RDF	parameterization studies, highly divergent protein sequences, complex genome analysis, nucleic acid, molecular evolutionary mechanisms, homologous sequences, distantly related proteins, HMM approaches, multiple protein sequence alignment, highest average entropylposition model, biologically informative model, biological features, protein family, model length, training set size, biologically informative HMMs, hidden Markov models, hidden Markov models, DNA, genetics, genetics, biology computing, optimal model, protein sequences
1	Webb Miller, Ahmed Elsherbini, Jamie Peck, Cathy Riemer, Scott Schwartz, Nikola Stojanovic, Ross C. Hardison	A database for globin gene expression data.	HICSS	1995	DBLP DOI BibTeX RDF	globin gene expression database, prototype database, /spl beta/-like globin gene cluster, mammals, globin gene biologists, sequence-analysis problems, e-mail server, highly conserved regions, run sequence features, World-Wide Web server, annotated alignment, database management systems, query languages, experimental results, sequence alignments, regulation, electronic mail, genetics, biology computing, information networks, data repository, graphical presentations
1	Darren M. Platt, Trevor I. Dix	Stochastic assembly of contig restriction maps.	HICSS	1995	DBLP DOI BibTeX RDF	cellular biophysics, stochastic assembly, contig restriction maps, genomic mapping clones, fragment measurements, restriction digest, map representation, fragment pairing, minimum message length principles, CEA gene region, chromosome 19, similarity, stochastic processes, genetics, biology computing, objective function
1	Darren M. Platt, Trevor I. Dix	A model for comparing genomic restriction maps.	HICSS	1995	DBLP DOI BibTeX RDF	genomic restriction map comparison, genetic physical maps, genomic extracts, plausible maps, minimum message length principles, fragment length data, clone fingerprinting, sequence tagged sites, map structure, mapping program, error parameters, mapping process, uncertainties, statistical analysis, errors, DNA, DNA, genetics, biology computing, objective function, optimal solution
1	E. Platt, Barry Robson	Practical use of a fully automatic homology-based protein modelling protocol.	HICSS	1995	DBLP DOI BibTeX RDF	fully automatic homology-based protein modelling protocol, tertiary structure prediction, HOM FOLD, fragment-based approach, GLOBAL language, energy refinement, X-ray crystallographic data, reproducibilty, 1.80 angstrom, rule based system, interactive modelling, biology computing, proteins, algorithm performance, molecular configurations, molecular biophysics
1	Fengrong Ren, Hiroshi Tanaka, Noria Fukuda, Takashi Gojobori	Molecular evolutionary phylogenetic trees based on minimum description length principle.	HICSS	1995	DBLP DOI BibTeX RDF	molecular evolutionary phylogenetic trees, minimum complexity phylogenetic tree, branch lengths, logarithmic likelihood, mitochondrial DNA sequences, complexity, trees (mathematics), inference mechanisms, DNA, genetics, biology computing, inductive inference, minimum description length principle, tree topology
1	Hugues Ripoche, Jean Sallantin	Knowledge discovery in a genetic database: the MINOS system.	HICSS	1995	DBLP DOI BibTeX RDF	genetic database, MINOS system, genetic sequence management, genetic sequences, functional inference, prediction functions, query processing, indexing, knowledge discovery, knowledge acquisition, query languages, object-oriented databases, object-oriented database, object-oriented languages, index, knowledge extraction, concept lattices, genetics, biology computing, object-oriented query language
1	Robert B. Russell, R. R. Copley, Geoffrey J. Barton	Protein fold recognition from secondary structure assignments.	HICSS	1995	DBLP DOI BibTeX RDF	protein fold recognition, secondary structure assignments, experimental restraints, protein structural domains, predicted secondary structure elements, connected secondary structures, plausible topologies, E. coli bio protein, SH2 fold, database, query processing, database management systems, query, errors, biology computing, proteins, chemistry computing, query pattern, database structure
1	Dong-Guk Shin	Comparative study of relational and object-oriented modelings of genomic data.	HICSS	1995	DBLP DOI BibTeX RDF	genomic data, disparate genomic data, E. Coli genome, human genome, highly flexible data modeling, complex genomic objects, ad hoc queries, heterogeneous genomic databases, data structures, query processing, relational databases, relational database, SQL, SQL, object-oriented databases, normalization, object-oriented modeling, genetics, biology computing, object-oriented data models, object-oriented approach, modeling methods
1	Ilya N. Shindyalov, Weider Chang, J. A. Cooper, Philip E. Bourne	Design and use of a software framework to obtain information derived from macromolecular structure data.	HICSS	1995	DBLP DOI BibTeX RDF	macromolecules, macromolecular structure data, extensible object oriented framework, biological macromolecules, biological significance, simple verification, single 3D coordinate set, X-ray crystallography, NMR studies, disparate experimental data sets, information retrieval, object-oriented programming, object-oriented databases, biology computing, software framework, molecular configurations
1	Elizabeth Shoop, Ed Huai-hsin Chi, John V. Carlis, Paul Bieganski, John Riedl, Neal Dalton, Thomas Newman, Ernest Retzel	Implementation and testing of an automated EST processing and similarity analysis system.	HICSS	1995	DBLP DOI BibTeX RDF	automated EST processing, similarity analysis system, expressed sequence tag sequencing projects, putative function, public databases, database technology, automated sequencing technologies, sequencing machine, database management systems, DNA, genomes, medical information systems, genetics, biology computing, system testing, genes, similarity analysis
1	Tom Slezak, Mark Wagner, Mimi Yeh, Linda Ashworth, David Nelson, David Ow, Elbert Branscomb, Anthony Carrano	A database system for constructing, integrating, and displaying physical maps of chromosome 19.	HICSS	1995	DBLP DOI BibTeX RDF	Human Genome Project, human chromosome 19, genomic research, DNA fingerprint analysis, overlap computation, contig assembly, map integration, database browsing, database system, display, DNA, genetics, biology computing, very large databases, design issues, computational support, physical maps
1	Zhirong Sun, Tom L. Blundell	The pattern of common supersecondary structure (motifs) in protein database.	HICSS	1995	DBLP DOI BibTeX RDF	common supersecondary structure, supersecondary motifs, residue conformation, nonregular structure regions, sequence pattern, database management systems, biology computing, proteins, proteins, motifs, chemistry computing, structure prediction, protein database, homology modelling
1	S. W. Thomas, Elke A. Rundensteiner, Amy J. Lee	Visualization and database tools for YAC and cosmid contig construction.	HICSS	1995	DBLP DOI BibTeX RDF	gene map visualization tools, database tools, YAC, cosmid contig construction, YAC-Cosmid contig tool, fine-scale ordering inference, gene searches, editing tool, Physical Map Assembler, a rule-based interval-ordering approach, active object-oriented database, ambiguity identification, usability, query processing, object-oriented databases, conflict resolution, data visualisation, active databases, genetics, biology computing, large data sets, user query, experimental data
1	Silke Kreitz, Andreas Hess, T.-H. Anderson	Direct enumeration and size classification of soil bacteria using confocal laser scanning microscopy and image analysis. (PDF / PS)	ICIP	1995	DBLP DOI BibTeX RDF	soil, optical microscopy, cellular biophysics, biological techniques, measurement by laser beam, size classification, soil bacteria, bacteria enumeration, confocal laser scanning microscopy, microbiology, sharpening filter, background correction, area measurement, background particles elimination, automatic image analysis, biological research technique, image processing, biology computing, threshold selection
1	William E. Lorensen	Marching Through the Visible Man.	IEEE Visualization	1995	DBLP DOI BibTeX RDF	special libraries, Visible Man, National Library of Medicine, human male cadaver, surface connectivity, bowels, magnetic resonance imaging, medical image processing, data visualisation, computed tomography, biology computing, skin, isosurface extraction, biomedical NMR, medical computing, computerised tomography, polygonal models, human body, muscle, bone, library automation
1	Penny Rheingans, John Nichols	Interactive 3D Visualization of Actual Anatomy and Simulated Chemical Time-Course Data for Fish.	IEEE Visualization	1995	DBLP DOI BibTeX RDF	zoology, interactive 3D visualization, actual anatomy, simulated chemical time-course data, gastrointestinal tract, physiologically based toxicokinetic model, three dimensional representation, rainbow trout, cross sectional images, anesthetized fish, kinetic data, pentachloroethane, tissue volumes, chemical concentration, continuous branchial exposure, interactive systems, image representation, magnetic resonance imaging, data visualisation, biology computing, time series data, biomedical NMR, chemistry computing
1	Roderic Guigó, Temple F. Smith	Inferring Correlation Between Database Queries: Analysis of Protein Sequence Patterns.	IEEE Trans. Pattern Anal. Mach. Intell.	1993	DBLP DOI BibTeX RDF	correlation inference, annotation query, protein sequence pattern analysis, stochastic dependence measurement, set similarity measure, protein sequence database, first-order language, query space, set algebra, query processing, query language, database theory, set theory, algebra, biology computing, proteins, database queries, correlation coefficient, asymptotic approximation
1	Zhi-Qiang Liu, Rangaraj M. Rangayyan, Cyril B. Frank	Directional Analysis of Images in Scale Space.	IEEE Trans. Pattern Anal. Mach. Intell.	1991	DBLP DOI BibTeX RDF	scale space images, directional analysis, piecewise linear patterns, gradient images, 2-D Gaussian functions, stability map, scanning electron microscope images, collagen fibrils, rabbit ligaments, ligament healing, treatment methods, ligament injuries, computer vision, orientation, filtering and prediction theory, biology computing, zero crossings
1	Estarose Wolfson, Eric L. Schwartz	Computing Minimal Distances on Polyhedral Surfaces.	IEEE Trans. Pattern Anal. Mach. Intell.	1989	DBLP DOI BibTeX RDF	3D polyhedral surfaces, minimal distances, biological surfaces, biological techniques and instruments, pattern recognition, computational geometry, computational geometry, picture processing, shortest path, computerised picture processing, computerised pattern recognition, biology computing, surface geometry, distance geometry, flattening