Search results for "eukaryotic genomes"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
2	Nirmal Ranganathan, Cédric Feschotte, David Levine	Cluster and Grid Based Classification of Transposable Elements in Eukaryotic Genomes.	CCGRID	2006	DBLP DOI BibTeX RDF	In cluster, transposable elements, bioinformatics, distributed workflow
2	O. V. Kel, A. G. Romachenko, Alexander E. Kel, Andrey N. Naumochkin, Nikolay A. Kolchanov	Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes.	HICSS	1995	DBLP DOI BibTeX RDF	TRRD, transcription regulatory regions, eukaryotic genomes, TRRD database, structural functional organization, protein factors, transcription signals, eukaryotic genome, EMBL, EPD, TFD, TRANSFAC, human glycoprotein hormone gene, database, data structures, database management systems, medical information systems, genetics, biology computing, data representation, transcription regulation
1	Hannah M. W. Salim, Amanda M. Koire, Nicholas A. Stover, Andre R. O. Cavalcanti	Detection of Fused Genes in Eukaryotic Genomes using Gene deFuser: Analysis of the Tetrahymena thermophila genome.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Georgii A. Bazykin, Alex V. Kochetov	Alternative translation start sites are conserved in eukaryotic genomes.	Nucleic Acids Research	2011	DBLP DOI BibTeX RDF
1	Abanish Singh, Umeshkumar Keswani, David Levine, Cédric Feschotte, Nikola Stojanovic	An algorithm for the reconstruction of consensus sequences of ancient segmental duplications and transposon copies in eukaryotic genomes.	IJBRA	2010	DBLP DOI BibTeX RDF
1	Wisnu Ananta Kusuma, Yutaka Akiyama	Design and Simulation of Hybrid de novo DNA Sequence Assembly for Large Eukaryotic Genomes.	PDPTA	2010	DBLP BibTeX RDF
1	Miguel Pignatelli, Florenci Serras, Andrés Moya, Roderic Guigó, Montserrat Corominas	CROC: finding chromosomal clusters in eukaryotic genomes.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Hao Wang, Zhao Xu	Identification of LTR retrotransposons in eukaryotic genomes: supports from structure and evolution.	IJBRA	2009	DBLP DOI BibTeX RDF
1	Andrew Shelenkov, Eugene V. Korotkov	Search of regular sequences in promoters from eukaryotic genomes.	Computational Biology and Chemistry	2009	DBLP DOI BibTeX RDF
1	Jörn Hameister, Werner E. Helm, Marc-Thorsten Hütt, Manuel Dehnert	Systematics of Short-range Correlations in Eukaryotic Genomes.	GfKl	2008	DBLP DOI BibTeX RDF
1	Dongsheng Che, Guojun Li, Shane T. Jensen, Jun S. Liu, Ying Xu	PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes.	ISBRA	2008	DBLP DOI BibTeX RDF
1	Raluca Gordân, Leelavati Narlikar, Alexander J. Hartemink	A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Genis Parra, Keith Bradnam, Ian Korf	CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.	Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Juan A. G. Ranea, Corin Yeats, Alastair Grant, Christine A. Orengo	Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes.	PLoS Computational Biology	2007	DBLP DOI BibTeX RDF
1	Meena K. Sakharkar, Kishore R. Sakharkar	A Tale of Intronless Genes in Eukaryotic Genomes.	BIBE	2007	DBLP DOI BibTeX RDF
1	Jie Zheng, Igor B. Rogozin, Eugene V. Koonin, Teresa M. Przytycka	A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
1	Nidhal Bouaynaya, Dan Schonfeld	Protein Communication System: Evolution and Genomic Structure.	Algorithmica	2007	DBLP DOI BibTeX RDF
1	Rohit Ghai, Hannes Lindemann, Trinad Chakraborty	Integrated functional visualization of eukaryotic genomes.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Jonathan M. Keith	Segmenting Eukaryotic Genomes with the Generalized Gibbs Sampler.	Journal of Computational Biology	2006	DBLP DOI BibTeX RDF
1	Reidar Andreson, Tarmo Puurand, Maido Remm	SNPmasker: automatic masking of SNPs and repeats across eukaryotic genomes.	Nucleic Acids Research	2006	DBLP DOI BibTeX RDF
1	Irina I. Abnizova, Walter R. Gilks	Studying statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the eukaryotic genomes.	Briefings in Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Wanyu Wang, Xiaoyu Chang, Chunguang Zhou	Combining Greedy Method and Genetic Algorithm to Identify Transcription Factor Binding Sites.	HIS	2006	DBLP DOI BibTeX RDF	genetic algorithm, greedy method, binding sites
1	Andrew Skabar, Dennis Wollersheim, Tim Whitfort	Multi-label Classification of Gene Function using MLPs.	IJCNN	2006	DBLP DOI BibTeX RDF
1	Dang Hung Tran, Tho Hoan Pham, Kenji Satou, Tu Bao Ho	Conditional Random Fields for Predicting and Analyzing Histone Occupancy, Acetylation and Methylation Areas in DNA Sequences.	EvoWorkshops	2006	DBLP DOI BibTeX RDF	Histone proteins, acetylation, conditional random fields, methylation
1	Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt	Alignment Statistics for Long-Range Correlated Genomic Sequences.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Ross Buchan, Ian Stansfield	Codon pair bias in prokaryotic and eukaryotic genomes.	BMC Bioinformatics	2005	DBLP BibTeX RDF
1	Yuandan Lee, Jennifer Tsai, S. Sunkara, Svetlana Karamycheva, Geo Pertea, Razvan Sultana, Valentin Antonescu, Agnes P. Chan, Foo Cheung, John Quackenbush	The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.	Nucleic Acids Research	2005	DBLP DOI BibTeX RDF
1	Sean Luke	Evolutionary computation and the c-value paradox.	GECCO	2005	DBLP DOI BibTeX RDF	C-value paradox, evolutionary genetics, theoretical biology, genetic programming, code bloat
1	Anantharaman Kalyanaraman, Srinivas Aluru	Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons.	CSB	2005	DBLP DOI BibTeX RDF
1	Shu Ju Hsieh, Yun Sheng Chung, Chuan Yi Tang, Chun-Yuan Lin	Comparative Exon Prediction based on Heuristic Coding Region Alignment.	ISPAN	2005	DBLP DOI BibTeX RDF
1	Wengang Zhou, Chunguang Zhou, Guixia Liu, Yanxin Huang	Identification of Transcription Factor Binding Sites Using Hybrid Particle Swarm Optimization.	RSFDGrC	2005	DBLP DOI BibTeX RDF
1	Lesley J. Collins, Thomas J. Macke, David Penny	Searching for ncRNAs in eukaryotic genomes: Maximizing biological input with RNAmotif.	J. Integrative Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Gary W. Stuart, Michael W. Berry	An SVD-based comparison of nine whole eukaryotic genomes supports a coelomate rather than ecdysozoan lineage.	BMC Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Meena K. Sakharkar, Pandjassarame Kangueane	Genome SEGE: A database for 'intronless' genes in eukaryotic genomes.	BMC Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Panagiotis A. Tsonis, Anastasios A. Tsonis	Reply to Li and Grosse's "comments on "linguistic features in eukaryotic genomes"".	Complexity	2004	DBLP DOI BibTeX RDF
1	Wentian Li, Ivo Grosse	Comments on "linguistic features in eukaryotic genomes".	Complexity	2004	DBLP DOI BibTeX RDF
1	Eduardo Eyras	Automatic Annotation of Alternative of Alternative Splicing in Eukaryotic Genomes.	Spanish Bioinformatics Conference	2004	DBLP BibTeX RDF
1	Xin He, Michael H. Goldwasser	Identifying conserved gene clusters in the presence of orthologous groups.	RECOMB	2004	DBLP DOI BibTeX RDF	clusters of orthologous genes, conserved gene clusters, gene teams, bioinformatics, comparative genomics
1	Boris Budagyan, Ann E. Loraine	Gene Length and Alternative Transcription in Fruit Fly.	CSB	2004	DBLP DOI BibTeX RDF
1	Stephane Cruveiller, Kamel Jabbari, Oliver Clay, Giorgio Bernardi	Compositional Features of Eukaryotic Genomes for Checking Predicted Genes.	Briefings in Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Derek Y. Chiang, Alan M. Moses, Manolis Kamvysselis, Eric S. Lander, Michael B. Eisen	Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts.	RECOMB	2003	DBLP DOI BibTeX RDF	multifactorial regulation, phylogenetic footprinting, promoter structure, comparative genomics, transcription regulation
1	Shu-Yun Le, Jih-H. Chen, Jacob V. Maizel	Statistical Inference for Well-ordered Structures in Nucleotide Sequences.	CSB	2003	DBLP DOI BibTeX RDF
1	Daniel Howard, Karl Benson	Evolutionary Computation Method for Promoter Site Prediction in DNA.	GECCO	2003	DBLP DOI BibTeX RDF
1	Melissa S. Cline, Guoying Liu, Ann E. Loraine, Ron Shigeta, Jill Cheng, Gangwu Mei, David Kulp, Michael A. Siani-Rose	Structure-Based Comparison of Four Eukaryotic Genomes.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
1	Takashi Gojobori, T. Daniel Andrews, Takeshi Itoh	Evolutionary features of genomes as disclosed by comparative analysis of complete genome sequences (abstract only).	RECOMB	2000	DBLP DOI BibTeX RDF
1	Andreas Wagner	Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes.	Bioinformatics	1999	DBLP DOI BibTeX RDF
1	Anthony Kerlavage	Perspectives on analysis and annotation of bacterial, archeal, and eukaryotic genomes.	German Conference on Bioinformatics	1997	DBLP BibTeX RDF
1	Y. V. Kondrakhin, F. A. Kolpakov, Alexander E. Kel, Nikolay A. Kolchanov, Luciano Milanesi	Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes.	German Conference on Bioinformatics	1996	DBLP BibTeX RDF
1	Guy Perrière, Frank Dorkeld, François Rechenmann, Christian Gautier	Object-Oriented Knowledge Bases for the Analysis of Prokaryotic and Eukaryotic Genomes.	ISMB	1993	DBLP BibTeX RDF