Search results for "genome comparison"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
2	Todd J. Treangen, Xavier Messeguer	Novel Computational Methods for Large Scale Genome Comparison.	IWPACBB	2008	DBLP DOI BibTeX RDF	genome alignment, interspersed repeats, DNA uptake sequences, homologous recombination, Hidden Markov Model, suffix tree, Comparative genomics
2	Arpith C. Jacob, Marcin Paprzycki, Maria Ganzha, Sugata Sanyal	Applying SIMD Approach to Whole Genome Comparison on Commodity Hardware.	PPAM	2007	DBLP DOI BibTeX RDF
2	Arpith C. Jacob, Sugata Sanyal, Marcin Paprzycki, Rajan Arora, Maria Ganzha	Whole Genome Comparison on a Network of Workstations.	ISPDC	2007	DBLP DOI BibTeX RDF
2	Kwangmin Choi, Amit Saple, Sun Kim	Genome Data Type: a Vehicle to Deliver a Genome Comparison System on the Web.	ICDM Workshops	2006	DBLP DOI BibTeX RDF
2	Guoqing Lu, Liying Jiang, Resa M. Kotalik, Thaine W. Rowley, Luwen Zhang, Xianfeng Chen, Etsuko N. Moriyama	GenomeBlast: A Web Tool for Small Genome Comparison.	IMSCCS	2006	DBLP DOI BibTeX RDF
2	Yudong Sun, Anil Wipat, Matthew R. Pocock, P. A. Lee, P. Watson, K. Flanagan, J. T. Worthington	A grid-based system for microbial genome comparison and analysis.	CCGRID	2005	DBLP DOI BibTeX RDF
2	Cynthia Gibas, David Sturgill, Jennifer W. Weller	GenoMosaic: On-Demand Multiple Genome Comparison and Comparative Annotatio. (PDF / PS)	BIBE	2003	DBLP DOI BibTeX RDF
2	Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milind Girkar	Performance Study of a Whole Genome Comparison Tool on a Hyper-Threading Multiprocessor.	ISHPC	2003	DBLP DOI BibTeX RDF
1	Irena Rusu	New applications of interval generators to genome comparison.	J. Discrete Algorithms	2012	DBLP DOI BibTeX RDF
1	Mitchell J. Sullivan, Nicola K. Petty, Scott A. Beatson	Easyfig: a genome comparison visualizer.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Christian Frech, Nansheng Chen	Genome Comparison of Human and Non-Human Malaria Parasites Reveals Species Subset-Specific Genes Potentially Linked to Human Disease.	PLoS Computational Biology	2011	DBLP DOI BibTeX RDF
1	Annie Chateau, Pierre Riou, Eric Rivals	Approximate Common Intervals in Multiple Genome Comparison.	BIBM	2011	DBLP DOI BibTeX RDF
1	Youngik Yang, Donald Gilbert, Sun Kim	Annotation confidence score for genome annotation: a genome comparison approach.	Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Eric Rivals, Alban Mancheron, Raluca Uricaru	Reliable Bacterial Genome Comparison Tools.	ERCIM News	2010	DBLP BibTeX RDF
1	Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo	CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences.	PPOPP	2010	DBLP DOI BibTeX RDF	biological sequence comparison, gpu, smith-waterman
1	Michael Seifert, Ali Banaei, Jens Keilwagen, Michael Florian Mette, Andreas Houben, François Roudier, Vincent Colot, Ivo Grosse, Marc Strickert	Array-based Genome Comparison of Arabidopsis Ecotypes using Hidden Markov Models.	BIOSIGNALS	2009	DBLP BibTeX RDF
1	Todd J. Treangen, Aaron E. Darling, Guillaume Achaz, Mark A. Ragan, Xavier Messeguer, Eduardo P. C. Rocha	A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	genome comparison, DNA repeats, local multiple alignment, gapped extension, hidden Markov model, Sequence alignment
1	Laurent Bulteau, Guillaume Fertin, Irena Rusu	Maximal Strip Recovery Problem with Gaps: Hardness and Approximation Algorithms.	ISAAC	2009	DBLP DOI BibTeX RDF	comparative maps, genome comparison, synteny blocks, approximation algorithms, algorithmic complexity
1	Pedro Feijão, João Meidanis	SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy.	WABI	2009	DBLP DOI BibTeX RDF
1	Leming Zhou, Jonathan Stanton, Liliana Florea	Universal seeds for cDNA-to-genome comparison.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Xu Ling, Xin He, Dong Xin, Jiawei Han	Efficiently Identifying Max-Gap Clusters in Pairwise Genome Comparison.	Journal of Computational Biology	2008	DBLP DOI BibTeX RDF
1	Narayanan Raghupathy, Rose Hoberman, Dannie Durand	Two Plus Two Does not Equal Three: Statistical Tests for Multiple genome Comparison.	J. Bioinformatics and Computational Biology	2008	DBLP DOI BibTeX RDF
1	Andrew Wei Xu, Benoît Alain, David Sankoff	Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases.	ECCB	2008	DBLP DOI BibTeX RDF
1	Sebastian Böcker, Katharina Jahn, Julia Mixtacki, Jens Stoye	Computation of Median Gene Clusters.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Amitava Karmaker, Stephen Harris, Stephen Kwek	Identification of cis-Regulatory Elements from Cross-Genome Comparison and Gene Expression Profile Analysis.	BIOCOMP	2007	DBLP BibTeX RDF
1	Narayanan Raghupathy, Rose Hoberman, Dannie Durand	Two Plus Two Does not Equal Three: Statistical Tests for Multiple Genome Comparison.	APBC	2007	DBLP BibTeX RDF
1	Morel Henley, Mikkel Hagen, R. Daniel Bergeron	Evaluating Two Visualization Techniques for Genome Comparison.	IV	2007	DBLP DOI BibTeX RDF
1	Yoan Diekmann, Marie-France Sagot, Eric Tannier	Evolution under Reversals: Parsimony and Conservation of Common Intervals.	IEEE/ACM Trans. Comput. Biology Bioinform.	2007	DBLP DOI BibTeX RDF	perfect sorting, Computational biology, genome rearrangements, sorting by reversals, common intervals, signed permutations
1	Winnie W. M. Lam, Keith C. C. Chan, David K. Y. Chiu, Andrew K. C. Wong	MAGMA: An Algorithm for Mining Multi-level Patterns in Genomic Data.	BIBM	2007	DBLP DOI BibTeX RDF
1	Todd J. Treangen, Xavier Messeguer	M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Zhaotao Cai, Xizeng Mao, Songgang Li, Liping Wei	Genome comparison using Gene Ontology (GO) with statistical testing.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Guoqing Lu, Liying Jiang, Resa M. K. Helikar, Thaine W. Rowley, Luwen Zhang, Xianfeng Chen, Etsuko N. Moriyama	GenomeBlast: a web tool for small genome comparison.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Anne Bergeron, Jens Stoye	On the Similarity of Sets of Permutations and Its Applications to Genome Comparison.	Journal of Computational Biology	2006	DBLP DOI BibTeX RDF
1	Anguo Dong, Andrei L. Turinsky, Andrew C. Ah-Seng, Morgan L. Taschuk, Paul M. K. Gordon, Katharina Hochauer, Sabrina Fröls, Jung Soh, Christoph W. Sensen	Enhancing Bluejay with Scalability, Genome Comparison and Microarray Visualization.	GfKl	2006	DBLP DOI BibTeX RDF
1	Yaniv Bernstein, Michael Cameron	Fast Discovery of Similar Sequences in Large Genomic Collections.	ECIR	2006	DBLP DOI BibTeX RDF
1	Bernhard Haubold, Nora Pierstorff, Friedrich Möller, Thomas Wiehe	Genome comparison without alignment using shortest unique substrings.	BMC Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Mohamed Ibrahim Abouelhoda, Enno Ohlebusch	Chaining algorithms for multiple genome comparison.	J. Discrete Algorithms	2005	DBLP DOI BibTeX RDF
1	Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhiping Wang, Jason Lee, Sun Kim	PLATCOM: a Platform for Computational Comparative Genomics on the Web.	CSB Workshops	2005	DBLP DOI BibTeX RDF
1	Marie-France Sagot, Eric Tannier	Perfect Sorting by Reversals.	COCOON	2005	DBLP DOI BibTeX RDF
1	Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole	CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.	Nucleic Acids Research	2004	DBLP DOI BibTeX RDF
1	Todd J. Treangen, Xavier Messeguer	M-GCAT: Multiple Genome Comparison and Alignment Tool.	Spanish Bioinformatics Conference	2004	DBLP BibTeX RDF
1	Xin He, Michael H. Goldwasser	Identifying conserved gene clusters in the presence of orthologous groups.	RECOMB	2004	DBLP DOI BibTeX RDF	clusters of orthologous genes, conserved gene clusters, gene teams, bioinformatics, comparative genomics
1	Rose Hoberman, David Sankoff, Dannie Durand	The Statistical Significance of Max-Gap Clusters.	Comparative Genomics	2004	DBLP DOI BibTeX RDF
1	Sun Kim	Graph Theoretic Sequence Clustering Algorithms and Their Applications to Genome Comparison.	Computational Biology and Genome Informatics	2003	DBLP BibTeX RDF
1	Ashok S. Kolaskar, Urmila Kulkarni-Kale	In-Silico approaches for the Identification and Genome Comparison of Animal Viruses.	IICAI	2003	DBLP BibTeX RDF
1	Anne Bergeron, Jens Stoye	On the Similarity of Sets of Permutations and Its Applications to Genome Comparison.	COCOON	2003	DBLP DOI BibTeX RDF
1	S. Alireza Aghili, Divyakant Agrawal, Amr El Abbadi	BFT: Bit Filtration Technique for Approximate String Join in Biological Databases.	SPIRE	2003	DBLP DOI BibTeX RDF
1	Graziela S. Araújo, Nalvo F. de Almeida Jr.	Phylogeny from Whole Genome Comparison.	WOB	2002	DBLP BibTeX RDF
1	Xin Chen, Sam Kwong, Ming Li	A compression algorithm for DNA sequences and its applications in genome comparison.	RECOMB	2000	DBLP DOI BibTeX RDF
1	Maria Emilia Telles Walter, Zanoni Dias, João Meidanis	A New Approach for Approximating the Tranposition Distance. (PDF / PS)	SPIRE	2000	DBLP DOI BibTeX RDF	transposition distance approximation, genome comparison, rearrangement distance, rearrangement events, relative gene order, similar genes, linear gene orders, breakpoint diagram, approximation algorithm, data structures, permutations, DNA, C programming language, DNA molecules
1	Arvind K. Bansal, Peer Bork	Applying Logic Programming to Derive Novel Functional Information of Genomes.	PADL	1999	DBLP DOI BibTeX RDF
1	Pascal R. R. Courtois, Maurice L. J. Moncany	A probabilistic algorithm for interactive huge genome comparison.	Computer Applications in the Biosciences	1995	DBLP DOI BibTeX RDF