Search results for "metabolomics"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
2	Ali Cakmak, Arun Dsouza, Richard W. Hanson, Gultekin Özsoyoglu, Z. Meral Özsoyoglu	A web-based data source for metabolomics.	ISCIS	2009	DBLP DOI BibTeX RDF
2	Hisayuki Horai, Masanori Arita, Takaaki Nishioka	Comparison of ESI-MS Spectra in MassBank Database.	BMEI	2008	DBLP DOI BibTeX RDF	comparison measure, mass spectrometry, database search, Metabolomics
2	Frank Klawonn, Claudia Choi, Beatrice Benkert, Bernhard Thielen, Richard Münch, Max Schobert, Dietmar Schomburg, Dieter Jahn	A Likelihood Ratio Test for Differential Metabolic Profiles in Multiple Intensity Measurements.	KES	2007	DBLP DOI BibTeX RDF	Pseudomonas aeruginosa, Likelihood ratio test, metabolomics
2	David P. Enot, Manfred Beckmann, John Draper	On the Interpretation of High Throughput MS Based Metabolomics Fingerprints with Random Forest.	CompLife	2006	DBLP DOI BibTeX RDF
2	Young Truong, Xiaodong Lin, Chris Beecher	Learning a complex metabolomic dataset using random forests and support vector machines.	KDD	2004	DBLP DOI BibTeX RDF	support vector machines, missing data, random forest, metabolomics
1	Darren J. Creek, Andris Jankevics, Karl E. V. Burgess, Rainer Breitling, Michael P. Barrett	IDEOM: an Excel interface for analysis of LC-MS-based metabolomics data.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Christoph Bueschl, Bernhard Kluger, Franz Berthiller, Gerald Lirk, Stephan Winkler, Rudolf Krska, Rainer Schuhmacher	MetExtract: a new software tool for the automated comprehensive extraction of metabolite-derived LC/MS signals in metabolomics research.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Alla Karnovsky, Terry E. Weymouth, Tim Hull, V. Glenn Tarcea, Giovanni Scardoni, Carlo Laudanna, Maureen A. Sartor, Kathleen A. Stringer, H. V. Jagadish, Charles F. Burant, Brian D. Athey, Gilbert S. Omenn	Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Ali Cakmak, Xinjian Qi, A. Ercument Cicek, Ilya Bederman, Leigh Henderson, Mitchell Drumm, Gultekin Özsoyoglu	A New metabolomics Analysis Technique: steady-State metabolic Network Dynamics Analysis.	J. Bioinformatics and Computational Biology	2012	DBLP DOI BibTeX RDF
1	Preeti Bais, Stephanie M. Moon-Quanbeck, Basil J. Nikolau, Julie A. Dickerson	Plantmetabolomics.org: mass spectrometry-based Arabidopsis metabolomics - database and tools update.	Nucleic Acids Research	2012	DBLP DOI BibTeX RDF
1	Mai Hamdalla, David F. Grant, Ion I. Mandoiu, Dennis W. Hill, Sanguthevar Rajasekaran, Reda A. Ammar	The use of graph matching algorithms to identify biochemical substructures in synthetic chemical compounds: Application to metabolomics.	ICCABS	2012	DBLP DOI BibTeX RDF
1	Carsten Henneges	Feature Selection and Data Mining for Proteomics and Metabolomics.		2011	RDF
1	Hiroshi Tsugawa, Yuki Tsujimot, Masanori Arita, Takeshi Bamba, Eiichiro Fukusaki	GC/MS Based Metabolomics: Development of a Data Mining System for Metabolite Identification by using Soft Independent Modeling of Class Analogy (SIMCA).	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Elon Correa, Royston Goodacre	A genetic algorithm-Bayesian network approach for the analysis of metabolomics and spectroscopic data: application to the rapid detection of Bacillus spores and identification of Bacillus species.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Lionel Blanchet, Agnieszka Smolinska, Amos Attali, Marcel P. Stoop, Kirsten A. M. Ampt, Hans van Aken, Ernst Suidgeest, Tinka Tuinstra, Sybren S. Wijmenga, Theo Luider, Lutgarde M. C. Buydens	Fusion of metabolomics and proteomics data for biomarkers discovery: case study on the experimental autoimmune encephalomyelitis.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Christian Ludwig, Ulrich L. Günther	MetaboLab - advanced NMR data processing and analysis for metabolomics.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Atanas Kamburov, Rachel Cavill, Timothy M. D. Ebbels, Ralf Herwig, Hector C. Keun	Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Isthiaq Ahmad, Frank Suits, Berend Hoekman, Morris A. Swertz, Heorhiy Byelas, Martijn Dijkstra, Rob W. W. Hooft, Dmitry Katsubo, Bas van Breukelen, Rainer Bischoff 0003, Peter Horvatovich	A high-throughput processing service for retention time alignment of complex proteomics and metabolomics LC-MS data.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Fernando García-Alcalde, Federico García-López, Joaquín Dopazo, Ana Conesa	Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Genevera I. Allen, Mirjana Maletic-Savatic	Sparse non-negative generalized PCA with applications to metabolomics.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Francesca Chignola, Silvia Mari, Tim J. Stevens, Rasmus H. Fogh, Valeria Mannella, Wayne Boucher, Giovanna Musco	The CCPN Metabolomics Project: a fast protocol for metabolite identification by 2D-NMR.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Raphael B. M. Aggio, Silas Granato Villas-Bôas, Katya Ruggiero	Metab: an R package for high-throughput analysis of metabolomics data generated by GC-MS.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Jianguo Xia, Igor Sinelnikov, David S. Wishart	MetATT: a web-based metabolomics tool for analyzing time-series and two-factor datasets.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Jon Pey, Constantinos Theodoropoulos, Alberto Rezola, Angel Rubio, Marta Cascante, Francisco J. Planes	Do elementary flux modes combine linearly at the "atomic" level? Integrating tracer-based metabolomics data and elementary flux modes.	Biosystems	2011	DBLP DOI BibTeX RDF
1	Holger Franken, Rainer Lehmann, Hans-Ulrich Häring, Andreas Fritsche, Norbert Stefan, Andreas Zell	Wrapper- and Ensemble-Based Feature Subset Selection Methods for Biomarker Discovery in Targeted Metabolomics.	PRIB	2011	DBLP DOI BibTeX RDF
1	Ashwin Manjunatha, Paul Anderson, Ajith Ranabahu, Amit P. Sheth	Identifying and Implementing the Underlying Operators for Nuclear Magnetic Resonance based Metabolomics Data Analysis.	BICoB	2011	DBLP BibTeX RDF
1	Hunter N. B. Moseley	Correcting for the effects of natural abundance in stable isotope resolved metabolomics experiments involving ultra-high resolution mass spectrometry.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Adam J. Carroll, Murray R. Badger, A. Harvey Millar	The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Henning Redestig, Miyako Kusano, Atsushi Fukushima, Fumio Matsuda, Kazuki Saito, Masanori Arita	Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Jianguo Xia, David S. Wishart	MetPA: a web-based metabolomics tool for pathway analysis and visualization.	Bioinformatics	2010	DBLP DOI BibTeX RDF
1	H. Paul Benton, Elizabeth J. Want, Timothy M. D. Ebbels	Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data.	Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Keren Yizhak, Tomer Benyamini, Wolfram Liebermeister, Eytan Ruppin, Tomer Shlomi	Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model.	Bioinformatics [ISMB]	2010	DBLP DOI BibTeX RDF
1	Jan Budczies, Carsten Denkert, Berit M. Müller, Scarlet F. Brockmöller, Manfred Dietel, Jules L. Griffin, Matej Oresic, Oliver Fiehn	METAtarget - Extracting Key Enzymes of Metabolic Regulation from Highthroughput Metabolomics Data using KEGG REACTION Information.	GCB	2010	DBLP BibTeX RDF
1	Bernhard Thielen, Stephanie Heinen, Dietmar Schomburg	mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	John Draper, David P. Enot, David Parker, Manfred Beckmann, Stuart Snowdon, Wanchang Lin, Hassan Zubair	Metabolite signal identification in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Hojung Nam, Bong Chul Chung, Younghoon Kim, Ki Young Lee, Doheon Lee	Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	V. V. Mihaleva, H. A. Verhoeven, R. C. H. de Vos, R. D. Hall, Roeland C. H. J. van Ham	Automated procedure for candidate compound selection in GC-MS metabolomics based on prediction of Kovats retention index.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Simon Rogers, Richard A. Scheltema, Mark A. Girolami, Rainer Breitling	Probabilistic assignment of formulas to mass peaks in metabolomics experiments.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Wei Zou, Vladimir V. Tolstikov	Pattern Recognition and Pathway Analysis with Genetic Algorithms in Mass Spectrometry Based Metabolomics.	Algorithms	2009	DBLP DOI BibTeX RDF
1	Bobbie-Jo M. Webb-Robertson, Lee Ann McCue, Nathaniel Beagley, Jason E. McDermott, David S. Wunschel, Susan M. Varnum, Jian Zhi Hu, Nancy G. Isern, Garry W. Buchko, Kathleen Mcateer, Joel G. Pounds	A Bayesian Integration Model of High-Throughput Proteomics and Metabolomics Data for Improved Early Detection of Microbial Infections.	Pacific Symposium on Biocomputing	2009	DBLP BibTeX RDF
1	Younghoon Kim, Imhoi Koo, Byung Hwa Jung, Bong Chul Chung, Doheon Lee	Multivariate classification of urine metabolome profiles for breast cancer diagnosis.	DTMBIO	2009	DBLP DOI BibTeX RDF	multivariate classification, urine analysis, metabolomics, breast cancer diagnosis, biomarker discovery
1	Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Oresic, Samuel Kaski	Two-Way Analysis of High-Dimensional Collinear Data.	ECML/PKDD	2009	DBLP DOI BibTeX RDF	multi-way analysis, factor analysis, hierarchical model, ANOVA, small sample-size, metabolomics
1	Sebastian Böcker, Florian Rasche, Tamara Steijger	Annotating Fragmentation Patterns.	WABI	2009	DBLP DOI BibTeX RDF
1	Bahrad A. Sokhansanj, Suman Datta, Xiaohua Hu	Scalable Dynamic Fuzzy Biomolecular Network Models for Large Scale Biology.	Fuzzy Systems in Bioinformatics and Computational Biology	2009	DBLP DOI BibTeX RDF
1	Irena Spasic, Daniel Schober, Susanna-Assunta Sansone, Dietrich Rebholz-Schuhmann, Douglas B. Kell, Norman W. Paton	Facilitating the development of controlled vocabularies for metabolomics technologies with text mining.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Eva Lange, Ralf Tautenhahn, Steffen Neumann, Clemens Gröpl	Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Kenneth Bryan, Lorraine Brennan, Padraig Cunningham	MetaFIND: A feature analysis tool for metabolomics data.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Yuanxin Xi, David M. Rocke	Baseline Correction for NMR Spectroscopic Metabolomics Data Analysis.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Heiko Neuweger, Stefan P. Albaum, Michael Dondrup, Marcus Persicke, Tony Watt, Karsten Niehaus, Jens Stoye, Alexander Goesmann	MeltDB: a software platform for the analysis and integration of metabolomics experiment data.	Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Marko Sysi-Aho, Mikko Katajamaa, Laxman Yetukuri, Matej Oresic	Normalization method for metabolomics data using optimal selection of multiple internal standards.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Helen M. Parsons, Christian Ludwig, Ulrich L. Günther, Mark R. Viant	Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	David S. Wishart	Current Progress in computational metabolomics.	Briefings in Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Chen Yang, Adam D. Richardson, Jeffrey W. Smith, Andrei Osterman	Comparative Metabolomics of Breast Cancer.	Pacific Symposium on Biocomputing	2007	DBLP BibTeX RDF
1	John L. Markley, Mark E. Anderson, Qiu Cui, Hamid Eghbalnia, Ian A. Lewis, Adrian D. Hegeman, Jing Li, Christopher F. Schulte, Michael R. Sussman, William M. Westler, Eldon L. Ulrich, Zsolt Zolnai	New Bioinformatics Resources For Metabolomics.	Pacific Symposium on Biocomputing	2007	DBLP BibTeX RDF
1	Juan Miguel García-Gómez, Salvador Tortajada, Javier Vicente, Carlos Sáez, Xavier Castells, Jan Luts, Margarida Julià-Sapé, Alfons Juan-Císcar, Sabine Van Huffel, Anna Barcelo, Joaquín Ariño, Carles Arús, Montserrat Robles	Genomics and Metabolomics Research for Brain Tumour Diagnosis Based on Machine Learning.	IWANN	2007	DBLP DOI BibTeX RDF
1	D. Dutta Majumder, Christian Ulrichs, Debosmita Majumder, Inga Mewis, Ashoke Ranjan Thakur, R. L. Brahmachary, Rajat Banerjee, Ayesha Rahman, Nitai Debnath, Dipankar Seth, Sumistha Das, Indrani Roy, Amrita Ghosh, Prity Sagar, Carsten Schulz, Nguyen Quang Linh, Arunava Goswami	Current Status and Future Trends of Nanoscale Technology and Its Impact on Modern Computing, Biology, Medicine and Agricultural Biotechnology.	ICCTA	2007	DBLP DOI BibTeX RDF	hydrophobic nanosilica, lipophilic nanosilica, Nanoscience, nanosilica, machine learning, pervasive computing, computational biology, genomics, reversible computing, Agriculture, cancer, HIV, cybernetics, quantum mechanics, consciousness, Alzheimer's disease, neuronal network, biotechnology, metabolomics, malaria
1	Sobha Mathew Tharayil, Ted Kalbfleisch, Anup Kumar	Service-Oriented Laboratory Information Management System for Life Sciences Research.	IEEE SCC	2007	DBLP DOI BibTeX RDF
1	Ralf Tautenhahn, Christoph Böttcher, Steffen Neumann	Annotation of LC/ESI-MS Mass Signals.	BIRD	2007	DBLP DOI BibTeX RDF
1	I. Emrah Nikerel, Wouter A. van Winden, Walter M. van Gulik, Joseph J. Heijnen	A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Arthur L. Castle, Oliver Fiehn, Rima Kaddurah-Daouk, John C. Lindon	Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results.	Briefings in Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Pedro Mendes	Metabolomics and the challenges ahead.	Briefings in Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Vladimir Shulaev	Metabolomics technology and bioinformatics.	Briefings in Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Jong Min Lee 0002, Erwin P. Gianchandani, Jason A. Papin	Flux balance analysis in the era of metabolomics.	Briefings in Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Sebastian Klie, Steffen Neumann	Storage and Processing of Mass Spectrometry Data.	DEXA Workshops	2006	DBLP DOI BibTeX RDF
1	Age K. Smilde, Jeroen J. Jansen, Huub C. J. Hoefsloot, Robert-Jan A. N. Lamers, Jan van der Greef, Marieke E. Timmerman	ANOVA-simultaneous component analysis (ASCA): a new tool for analyzing designed metabolomics data.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Khaled Khelif, Rose Dieng-Kuntz, Pascal Barbry	Semantic Web Technologies for Interpreting DNA Microarray Analyses: The MEAT System.	WISE	2005	DBLP DOI BibTeX RDF
1	Jeroen J. Jansen, Huub C. J. Hoefsloot, Hans F. M. Boelens, Jan van der Greef, Age K. Smilde	Analysis of longitudinal metabolomics data.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Anthony L. Duran, Jian Yang, Liangjiang Wang, Lloyd W. Sumner	Metabolomics spectral formatting, alignment and conversion tools (MSFACTs).	Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Manuel Corpas	Integrating Simulation Packages via Systems Biology Mark-Up Language.	CMSB	2003	DBLP DOI BibTeX RDF
1	Sourav S. Bhowmick, Dadabhai T. Singh, Amey V. Laud	Data Management in Metaboloinformatics: Issues and Challenges.	DEXA	2003	DBLP DOI BibTeX RDF
1	Janet Taylor, Ross D. King, Thomas Altmann, Oliver Fiehn	Application of metabolomics to plant genotype discrimination using statistics and machine learning.	ECCB	2002	DBLP BibTeX RDF
1	Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer	Microarrays: how many do you need?	RECOMB	2002	DBLP DOI BibTeX RDF