Search results for "metagenomics"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
3	Susan L. Havre, Bobbie-Jo M. Webb-Robertson, Anuj R. Shah, Christian Posse, Banu Gopalan, Fred J. Brockman	Bioinformatic Insights from Metagenomics through Visualization.	CSB	2005	DBLP DOI BibTeX RDF	visualization, bioinformatics, categorical, metagenomics, nominal
2	Ilkay Altintas, Abel W. Lin, Jing Chen, Chris Churas, Madhusudan Gujral, Shulei Sun, Weizhong Li, Ramil Manansala, Mayya Sedova, Jeffrey S. Grethe, Mark H. Ellisman	CAMERA 2.0: A Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows.	SERVICES	2010	DBLP DOI BibTeX RDF	collaboration, scientific workflows, provenance, metagenomics
2	Bin Yang, Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Jing-Chi Chen, Francis Y. L. Chin	Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers.	DTMBIO	2009	DBLP DOI BibTeX RDF	dna composition features, k-mer, modified chebychev distance, k-mean clustering, metagenomics, binning
1	Sabine Ménigaud, Ludovic Mallet, Géraldine Picord, Cécile Churlaud, Alexandre Borrel, Patrick Deschavanne	GOHTAM: a website for 'Genomic Origin of Horizontal Transfers, Alignment and Metagenomics'.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Andreas Wilke, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer	An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud.	Concurrency and Computation: Practice and Experience	2011	DBLP DOI BibTeX RDF
1	Ozkan U. Nalbantoglu, Samuel F. Way, Steven H. Hinrichs, Khalid Sayood	RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Chien-Hao Su, Ming-Tsung Hsu, Tse-Yi Wang, Sufeng Chiang, Jen-Hao Cheng, Francis C. Weng, Cheng-Yan Kao, Daryi Wang, Huai-Kuang Tsai	MetaABC - an integrated metagenomics platform for data adjustment, binning and clustering.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Neethu Shah, Haixu Tang, Thomas G. Doak, Yuzhen Ye	Comparing Bacterial Communities Inferred from 16s Rrna Gene Sequencing and Shotgun Metagenomics.	Pacific Symposium on Biocomputing	2011	DBLP BibTeX RDF
1	Xiaoquan Su, Yongzheng Ma, Hongwei Yang, Xingzhi Chang, Kai Nan, Jian Xu, Kang Ning	An Open-source Collaboration Environment for Metagenomics Research.	eScience	2011	DBLP DOI BibTeX RDF
1	Folker Meyer, Nikos Kyrpides	Proposal for Open Discussion - Informatics Challenges for Next Generation Sequencing Metagenomics Experiments.	BIOINFORMATICS	2011	DBLP BibTeX RDF
1	Shruthi Prabhakara, Raj Acharya	A Two-Way Bayesian Mixture Model for Clustering in Metagenomics.	PRIB	2011	DBLP DOI BibTeX RDF
1	Suparna Mitra, Max Schubach, Daniel H. Huson	Short clones or long clones? A simulation study on the use of paired reads in metagenomics.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Johannes Goll, Douglas B. Rusch, David M. Tanenbaum, Mathangi Thiagarajan, Kelvin Li, Barbara A. Methé, Shibu Yooseph	METAREP: JCVI metagenomics reports - an open source tool for high-performance comparative metagenomics.	Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Fengfeng Zhou, Ying Xu	cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data.	Bioinformatics	2010	DBLP DOI BibTeX RDF
1	John C. Wooley, Adam Godzik, Iddo Friedberg	A Primer on Metagenomics.	PLoS Computational Biology	2010	DBLP DOI BibTeX RDF
1	Peter Sterk, Lynette Hirschman, Dawn Field, John C. Wooley	Genomic Standards Consortium Workshop: Metagenomics, Metadata and Metaanalysis (M3).	Pacific Symposium on Biocomputing	2010	DBLP BibTeX RDF
1	Man Chon U, Vasim Mahamuda, Khaled Rasheed	On the Scalability of Supervised Learners in Metagenomics.	ICMLA	2010	DBLP DOI BibTeX RDF
1	Steven D. Essinger, Robi Polikar, Gail L. Rosen	Neural network-based taxonomic clustering for metagenomics.	IJCNN	2010	DBLP DOI BibTeX RDF
1	Mark Menor, Kyungim Baek, Mahdi Belcaid, Yannick Gingras, Guylaine Poisson	Virus DNA-fragment classification using taxonomic hidden Markov model profiles.	SAC	2010	DBLP DOI BibTeX RDF	machine learning, annotation, viruses, metagenomics
1	Steven D. Essinger, Gail L. Rosen	The Effect of Sequence Error and Partial Training Data on BLAST Accuracy.	BIBE	2010	DBLP DOI BibTeX RDF	Error Analysis, BLAST, Metagenomics
1	Daniel H. Huson, Daniel C. Richter, Suparna Mitra, Alexander F. Auch, Stephan C. Schuster	Methods for comparative metagenomics.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Larry Smarr, Paul Gilna, Philip M. Papadopoulos, Thomas A. DeFanti, Gregory R. Hidley, John C. Wooley, E. Virginia Armbrust, Forest Rohwer, Eric Frost	Building an OptIPlanet collaboratory to support microbial metagenomics.	Future Generation Comp. Syst.	2009	DBLP DOI BibTeX RDF
1	Yuzhen Ye, Haixu Tang	An Orfome Assembly Approach to Metagenomics Sequences Analysis.	J. Bioinformatics and Computational Biology	2009	DBLP DOI BibTeX RDF
1	John C. Wooley, Yuzhen Ye	Metagenomics: Facts and Artifacts, and Computational Challenges.	J. Comput. Sci. Technol.	2009	DBLP DOI BibTeX RDF
1	Jared Wilkening, Andreas Wilke, Narayan Desai, Folker Meyer	Using clouds for metagenomics: A case study.	CLUSTER	2009	DBLP DOI BibTeX RDF
1	Matthew J. Bietz, Charlotte P. Lee	Collaboration in Metagenomics: Sequence Databases and the Organization of Scientific Work.	ECSCW	2009	DBLP BibTeX RDF
1	Saket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford	Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information.	RECOMB	2009	DBLP DOI BibTeX RDF	Hierarchical Tree Decompositions, Variation of Information, OTUs, Clustering, Protein Interaction Networks, Metagenomics
1	Itai Sharon, Amrita Pati, Victor M. Markowitz, Ron Y. Pinter	A Statistical Framework for the Functional Analysis of Metagenomes.	RECOMB	2009	DBLP DOI BibTeX RDF	function comparison, Lander-Waterman, functional analysis, metagenomics
1	Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, Elena Marchiori	Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data.	PRIB	2009	DBLP DOI BibTeX RDF
1	Guylaine Poisson, Mahdi Belcaid, Anne Bergeron	Comparative Genomics and Extensive Recombinations in Phage Communities.	RECOMB-CG	2009	DBLP DOI BibTeX RDF
1	Folker Meyer, Daniel Paarmann, Mark D'Souza, Robert Olson, Elizabeth M. Glass, Michael Kubal, Tobias Paczian, Alexis A. Rodriguez, Rick Stevens, Andreas Wilke, Jared Wilkening, Robert A. Edwards	The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Patrick D. Schloss, Jo Handelsman	A statistical toolbox for metagenomics: assessing functional diversity in microbial communities.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Miguel Pignatelli, Gabriel Aparício, Ignacio Blanquer, Vicente Hernández, Andrés Moya, Javier Tamames	Metagenomics reveals our incomplete knowledge of global diversity.	Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, Jonathan A. Eisen	CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads.	RECOMB	2008	DBLP DOI BibTeX RDF	weighted PCA, DNA composition metrics, Genome Signatures, Feature Extraction, Metagenomics, Normalized Cut, Binning
1	Thomas Lingner, Peter Meinicke	Fast Target Set Reduction for Large-Scale Protein Function Prediction: A Multi-class Multi-label Machine Learning Approach.	WABI	2008	DBLP DOI BibTeX RDF	Pfam, target set reduction, machine learning, large-scale, protein classification, multi-class, metagenomics, homology search, protein function prediction, multi-label
1	Changjun Wu, Ananth Kalyanaraman	An efficient parallel approach for identifying protein families in large-scale metagenomic data sets.	SC	2008	DBLP DOI BibTeX RDF
1	Beltran Rodriguez-Brito, Forest Rohwer, Robert Edwards	An application of statistics to comparative metagenomics.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Nigel McCoy, Shaun Mahony, Aaron Golden	Gene Prediction in Metagenomic Libraries Using the Self Organising Map and High Performance Computing Techniques.	GCCB	2006	DBLP DOI BibTeX RDF	MPI, HPC, Self Organising Map, Metagenomics