Search results for "ncRNA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
2	Thomas K. F. Wong, Siu-Ming Yiu, Tak Wah Lam, Wing-Kin Sung	The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning.	BICoB	2009	DBLP DOI BibTeX RDF
2	Matthias Zytnicki, Christine Gaspin, Thomas Schiex	DARN! A Weighted Constraint Solver for RNA Motif Localization.	Constraints	2008	DBLP DOI BibTeX RDF	DARN, RNA motif localization, ncRNA
1	Yanni Sun, Jeremy Buhler, Cheng Yuan	Designing Filters for Fast-Known NcRNA Identification.	IEEE/ACM Trans. Comput. Biology Bioinform.	2012	DBLP DOI BibTeX RDF
1	Rujira Achawanantakun, Yanni Sun, Seyedeh Shohreh Takyar	Ncrna Consensus Secondary Structure Derivation Using Grammar Strings.	J. Bioinformatics and Computational Biology	2011	DBLP DOI BibTeX RDF
1	Mario Fasold, David Langenberger, Hans Binder, Peter F. Stadler, Steve Hoffmann	DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments.	Nucleic Acids Research	2011	DBLP DOI BibTeX RDF
1	Jose C. Nacher, N. Araki	Structural characterization and modeling of ncRNA-protein interactions.	Biosystems	2010	DBLP DOI BibTeX RDF
1	Feng Chen, Yi-Ping Phoebe Chen	Exploring the ncRNA-ncRNA patterns based on bridging rules.	Journal of Biomedical Informatics	2010	DBLP DOI BibTeX RDF
1	Satish Chikkagoudar, Dennis R. Livesay, Usman Roshan	PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences.	Nucleic Acids Research	2010	DBLP DOI BibTeX RDF
1	Ning Yu, Kyu Hong Cho, Qiang Cheng, Rafael A. Tesorero	A Hybrid Computational Approach for the Prediction of Small Non-coding RNAs from Genome Sequences.	CSE	2009	DBLP DOI BibTeX RDF
1	Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu	Structural Alignment of RNA with Complex Pseudoknot Structure.	WABI	2009	DBLP DOI BibTeX RDF	pseudoknots, Structural alignment, non-coding RNA
1	Kazutaka Katoh, Hiroyuki Toh	Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama	Software.ncrna.org: web servers for analyses of RNA sequences.	Nucleic Acids Research	2008	DBLP DOI BibTeX RDF
1	Yair Horesh, Tirza Doniger, Shulamit Michaeli, Ron Unger	RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Adrienne X. Wang, Walter L. Ruzzo, Martin Tompa	How accurately is ncRNA aligned within whole-genome multiple alignments?	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Kazuya Ogasawara, Satoshi Kobayashi	Stochastically Approximating Tree Grammars by Regular Grammars and Its Application to Faster ncRNA Family Annotation.	LATA	2007	DBLP BibTeX RDF
1	Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido	Outlining a Strategy for Screening Non-coding RNAs on a Transcriptome Through Support Vector Machines.	BSB	2007	DBLP DOI BibTeX RDF	ncRNA, Paracoccidioides brasiliensis, machine learning, Support Vector Machines, non-coding RNA, transcriptome
1	Sarah Lopez, Guoqing Lu, Zhengxin Chen	Modeling miRNA data.	SAC	2007	DBLP DOI BibTeX RDF	miRNA, XML, database, relational database, data modeling
1	Scott F. Smith 0002	Covariance Searches for ncRNA Gene Finding.	CIBCB	2006	DBLP DOI BibTeX RDF
1	Shaojie Zhang, Ilya Borovok, Yair Aharonowitz, Roded Sharan, Vineet Bafna	A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements.	ISMB (Supplement of Bioinformatics)	2006	DBLP DOI BibTeX RDF
1	Marcin Kubica, Romeo Rizzi, Stéphane Vialette, Tomasz Walen	Approximation of RNA Multiple Structural Alignment.	CPM	2006	DBLP DOI BibTeX RDF
1	Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna	Structural Alignment of Pseudoknotted RNA.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Yair Horesh, Ron Unger	A bottom-up clustering algorithm to detect ncRNA molecules with a common secondary structure.	IJBRA	2005	DBLP DOI BibTeX RDF
1	Shaojie Zhang, Brian Haas, Eleazar Eskin, Vineet Bafna	Searching Genomes for Noncoding RNA Using FastR.	IEEE/ACM Trans. Comput. Biology Bioinform.	2005	DBLP DOI BibTeX RDF	Noncoding RNA, riboswitch, bacterial genome, filtration, database search
1	Zasha Weinberg, Walter L. Ruzzo	Faster genome annotation of non-coding RNA families without loss of accuracy.	RECOMB	2004	DBLP DOI BibTeX RDF	covariance models, gene families, genome annotation, histone downstream element, hyperthermophile archaea snoRNA, iron response element, rigorous filter, profile hidden Markov models, non-coding RNA
1	Vineet Bafna, Shaojie Zhang	FastR: Fast Database Search Tool for Non-Coding RNA.	CSB	2004	DBLP DOI BibTeX RDF	non-coding RNA genes, dynamic programming, sequence alignment, RNA, filtration, database search
1	Eugene Davydov, Serafim Batzoglou	A Computational Model for RNA Multiple Structural Alignment..	CPM	2004	DBLP DOI BibTeX RDF
1	Jin-Wu Nam, Je-Gun Joung, Y. S. Ahn, Byoung-Tak Zhang	Two-Step Genetic Programming for Optimization of RNA Common-Structure.	EvoWorkshops	2004	DBLP DOI BibTeX RDF