Search results for "non-coding RNA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
3	Scott F. Smith 0002	A Fast Approximate Covariance-Model-Based Database Search Method for Non-coding RNA.	ISBRA	2007	DBLP DOI BibTeX RDF	functional RNA, covariance models, dynamic programming, database search, gene finding, Non-coding RNA
3	Vineet Bafna, Shaojie Zhang	FastR: Fast Database Search Tool for Non-Coding RNA.	CSB	2004	DBLP DOI BibTeX RDF	non-coding RNA genes, dynamic programming, sequence alignment, RNA, filtration, database search
2	Lana X. Garmire, Shankar Subramaniam, David G. Garmire, Christopher K. Glass	A Clustering Approach to Identify Intergenic Non-coding RNA in Mouse Macrophages.	BIBE	2010	DBLP DOI BibTeX RDF	ChIP-Seq, RNA polymerase, macrophage, clustering, non-coding RNA
2	Zasha Weinberg, Walter L. Ruzzo	Faster genome annotation of non-coding RNA families without loss of accuracy.	RECOMB	2004	DBLP DOI BibTeX RDF	covariance models, gene families, genome annotation, histone downstream element, hyperthermophile archaea snoRNA, iron response element, rigorous filter, profile hidden Markov models, non-coding RNA
1	Cuncong Zhong, Justen Andrews, Shaojie Zhang	Discovering non-coding RNA elements in drosophila 3′ untranslated regions.	ICCABS	2012	DBLP DOI BibTeX RDF
1	Wenbo Jiang, Kay C. Wiese	Combined covariance model for non-coding RNA gene finding.	CIBCB	2011	DBLP DOI BibTeX RDF
1	Felipe Lessa, Daniele Martins Neto, Kátia Guimarães, Marcelo M. Brigido, Maria Emilia Telles Walter	Regene: Automatic Construction of a Multiple Component Dirichlet Mixture Priors Covariance Model to Identify Non-coding RNA.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Peter Raasch, Ulf Schmitz, Nadja Patenge, Julio Vera, Bernd Kreikemeyer, Olaf Wolkenhauer	Non-coding RNA detection methods combined to improve usability, reproducibility and precision.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Tzu-Hao Chang, Li-Ching Wu, Jun-Hong Lin, Hsien-Da Huang, Baw-Jhiune Liu, Kuang-Fu Cheng, Jorng-Tzong Horng	Prediction of small non-coding RNA in bacterial genomes using support vector machines.	Expert Syst. Appl.	2010	DBLP DOI BibTeX RDF
1	Satish Chikkagoudar, Dennis R. Livesay, Usman Roshan	PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences.	Nucleic Acids Research	2010	DBLP DOI BibTeX RDF
1	Jennifer A. Smith	Computation intelligence method to find generic non-coding RNA search models.	CIBCB	2010	DBLP DOI BibTeX RDF
1	Jennifer Smith	Joint Loop End Modeling Improves Covariance Model Based Non-coding RNA Gene Search.	PRIB	2010	DBLP DOI BibTeX RDF
1	Yasuo Tabei, Kiyoshi Asai	A local multiple alignment method for detection of non-coding RNA sequences.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Thao T. Tran, Fengfeng Zhou, Sarah Marshburn, Mark Stead, Sidney R. Kushner, Ying Xu	De novo computational prediction of non-coding RNA genes in prokaryotic genomes.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu	Structural Alignment of RNA with Complex Pseudoknot Structure.	WABI	2009	DBLP DOI BibTeX RDF	pseudoknots, Structural alignment, non-coding RNA
1	Na'el Abu-halaweh, Robert W. Harrison	Prediction and Classification of Real and Pseudo MicroRNA Precursors via Data Fuzzification and Fuzzy Decision Trees.	ISBRA	2009	DBLP DOI BibTeX RDF	miRNA, microRNA, pre-miRNA, microRNA precursors
1	Inna Myslyuk, Tirza Doniger, Yair Horesh, Avraham Hury, Ran Hoffer, Yaara Ziporen, Shulamit Michaeli, Ron Unger	Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Akito Taneda	An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Zhibin Huang, Yong Wu, Joseph Robertson, Liang Feng, Russell L. Malmberg, Liming Cai	Fast and accurate search for non-coding RNA pseudoknot structures in genomes.	Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Scott F. Smith, Kay C. Wiese	Integrating Thermodynamic and Observed-Frequency Data for Non-coding RNA Gene Search.	T. Comp. Sys. Biology	2008	DBLP DOI BibTeX RDF
1	Rukshan Batuwita, Vasile Palade	An improved non-comparative classification method for human microRNA gene prediction.	BIBE	2008	DBLP DOI BibTeX RDF
1	Scott F. Smith	RNA Search Acceleration with Genetic Algorithm Generated Decision Trees.	ICMLA	2008	DBLP DOI BibTeX RDF
1	Stinus Lindgreen, Paul P. Gardner, Anders Krogh	Multiple alignment and structure prediction of non-coding RNA sequences.	BMC Bioinformatics	2007	DBLP BibTeX RDF
1	Taishin Kin, Kouichirou Yamada, Goro Terai, Hiroaki Okida, Yasuhiko Yoshinari, Yukiteru Ono, Aya Kojima, Yuki Kimura, Takashi Komori, Kiyoshi Asai	fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences.	Nucleic Acids Research	2007	DBLP DOI BibTeX RDF
1	Jean-Eudes Duchesne, Mathieu Giraud, Nadia El-Mabrouk	Seed-Based Exclusion Method for Non-coding RNA Gene Search.	COCOON	2007	DBLP DOI BibTeX RDF
1	Xiaoyong Fang, Zhenghua Wang, Zhigang Luo, Bo Yuan, Fan Ding	The detection and assessment of possible RNA secondary structure using multiple sequence alignment.	SAC	2007	DBLP DOI BibTeX RDF	multiple sequence alignment, RNA secondary structure, non-coding RNA
1	Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido	Outlining a Strategy for Screening Non-coding RNAs on a Transcriptome Through Support Vector Machines.	BSB	2007	DBLP DOI BibTeX RDF	ncRNA, Paracoccidioides brasiliensis, machine learning, Support Vector Machines, non-coding RNA, transcriptome
1	Sarah Lopez, Guoqing Lu, Zhengxin Chen	Modeling miRNA data.	SAC	2007	DBLP DOI BibTeX RDF	miRNA, XML, database, relational database, data modeling
1	Xiaoyong Fang, Zhigang Luo, Bo Yuan, Zhenghua Wang	Detecting and Assessing Conserved Stems for Accurate Structural Alignment of RNA Sequences.	BIBE	2007	DBLP DOI BibTeX RDF
1	Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato	Stem Kernels for RNA Sequence Analyses.	BIRD	2007	DBLP DOI BibTeX RDF	stem kernel, SVM, secondary structure, RNA, string kernel
1	Deniz Dalli, Andreas Wilm, Indra Mainz, Gerhard Steger	StrAl: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Chunlin Wang, Chris H. Q. Ding, Richard F. Meraz, Stephen R. Holbrook	PSoL: a positive sample only learning algorithm for finding non-coding RNA genes.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Zasha Weinberg, Walter L. Ruzzo	Sequence-based heuristics for faster annotation of non-coding RNA families.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Scott F. Smith 0002	Acceleration of Covariance Models for Non-coding RNA Search.	BIOCOMP	2006	DBLP BibTeX RDF
1	Scott F. Smith 0002	Covariance Searches for ncRNA Gene Finding.	CIBCB	2006	DBLP DOI BibTeX RDF
1	Marcin Kubica, Romeo Rizzi, Stéphane Vialette, Tomasz Walen	Approximation of RNA Multiple Structural Alignment.	CPM	2006	DBLP DOI BibTeX RDF
1	Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna	Structural Alignment of Pseudoknotted RNA.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Jim C. Huang, Quaid Morris, Brendan J. Frey	Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Yan Karklin, Richard F. Meraz, Stephen R. Holbrook	Classification of Non-Coding RNA Using Graph Representations of Secondary Structure.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
1	Walter L. Ruzzo	Searching for Non-coding RNA.	BSB	2005	DBLP DOI BibTeX RDF
1	Praveen Sethupathy, Molly Megraw, M. Inmaculada Barrasa, Artemis G. Hatzigeorgiou	Computational Identification of Regulatory Factors Involved in MicroRNA Transcription.	Panhellenic Conference on Informatics	2005	DBLP DOI BibTeX RDF
1	Vineet Bafna, Haixu Tang, Shaojie Zhang	Consensus Folding of Unaligned RNA Sequences Revisited.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Yinglei Song, Jizhen Zhao, Chunmei Liu, Kan Liu, Russell L. Malmberg, Liming Cai	RNA Structural Homology Search with a Succinct Stochastic Grammar Model.	J. Comput. Sci. Technol.	2005	DBLP DOI BibTeX RDF	RNA structural homology search, stochastic context-free grammar (SCFG), structure-sequence alignment, pseudoknot
1	Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara	Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures.	CSB	2004	DBLP DOI BibTeX RDF
1	Eugene Davydov, Serafim Batzoglou	A Computational Model for RNA Multiple Structural Alignment..	CPM	2004	DBLP DOI BibTeX RDF
1	Jin-Wu Nam, Je-Gun Joung, Y. S. Ahn, Byoung-Tak Zhang	Two-Step Genetic Programming for Optimization of RNA Common-Structure.	EvoWorkshops	2004	DBLP DOI BibTeX RDF
1	Miklós Csürös	Algorithms for Finding Maximal-Scoring Segment Sets (Extended Abstract).	WABI	2004	DBLP DOI BibTeX RDF
1	Giulio Pavesi, Giancarlo Mauri, Graziano Pesole	Predicting Conserved Hairpin Motifs in Unaligned RNA Sequences.	ICTAI	2003	DBLP DOI BibTeX RDF