Search results for "phylogenetics"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
3	Elizabeth S. Allman, John A. Rhodes	The Identifiability of Covarion Models in Phylogenetics.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	Markov processes on trees, statistical consistency, phylogenetics
2	Dan Gusfield	The Multi-State Perfect Phylogeny Problem with Missing and Removable Data: Solutions via Integer-Programming and Chordal Graph Theory.	RECOMB	2009	DBLP DOI BibTeX RDF	graph triangulation, integer programming, computational biology, chordal graphs, phylogenetics, perfect phylogeny
2	Sandro Pirkwieser, Günther R. Raidl	Finding consensus trees by evolutionary, variable neighborhood search, and hybrid algorithms.	GECCO	2008	DBLP DOI BibTeX RDF	consensus tree problem, memetic algorithm, variable neighborhood search, hybrid methods, phylogenetics
2	Vincent Berry, François Nicolas	Improved Parameterized Complexity of the Maximum Agreement Subtree and Maximum Compatible Tree Problems.	IEEE/ACM Trans. Comput. Biology Bioinform.	2006	DBLP DOI BibTeX RDF	algorithms, pattern matching, trees, consensus, compatibility, fixed-parameter tractability, Phylogenetics
2	David R. B. Stockwell, Jason T. L. Wang	Biomonitoring, Phylogenetics and Anomaly Aggregation Systems.	ISI	2005	DBLP DOI BibTeX RDF
2	Michael Till, Bing Bing Zhou, Albert Y. Zomaya, Lars S. Jermiin	Phylogenetic Analysis Using Maxmimum Likelihood Methods in Homogenous Parallel Environments.	PDCAT	2004	DBLP DOI BibTeX RDF	ASA, parallel, SPMD, phylogenetics, super computing
2	David Bryant, Vincent Moulton	NeighborNet: An Agglomerative Method for the Construction of Planar Phylogenetic Networks.	WABI	2002	DBLP DOI BibTeX RDF	SplitsTree, Networks, Hybridization, Phylogenetics, Neighbor-Joining
2	Craig A. Stewart, David Hart, Donald K. Berry, Gary J. Olsen, Eric A. Wernert, William Fischer	Parallel implementation and performance of fastDNAml: a program for maximum likelihood phylogenetic inference.	SC	2001	DBLP DOI BibTeX RDF	scalability, bioinformatics, maximum likelihood, parallel applications, phylogenetics
1	David Bryant, Mike A. Steel	'Bureaucratic' set systems, and their role in phylogenetics.	Appl. Math. Lett.	2012	DBLP DOI BibTeX RDF
1	Tamir Tuller, Elchanan Mossel	Co-evolution Is Incompatible with the Markov Assumption in Phylogenetics.	IEEE/ACM Trans. Comput. Biology Bioinform.	2011	DBLP DOI BibTeX RDF
1	Bongsoo Park, Jongsun Park, Kyeong-Chae Cheong, Jaeyoung Choi, Kyongyong Jung, Donghan Kim, Yong-Hwan Lee, Todd J. Ward, Kerry O'Donnell, David M. Geiser, Seogchan Kang	Cyber infrastructure for Fusarium: three integrated platforms supporting strain identification, phylogenetics, comparative genomics and knowledge sharing.	Nucleic Acids Research	2011	DBLP DOI BibTeX RDF
1	Rubén Sánchez, François Serra, Joaquín Tárraga, Ignacio Medina, José Carbonell, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo	Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.	Nucleic Acids Research	2011	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Fernando Izquierdo-Carrasco	Result verification, code verification and computation of support values in phylogenetics.	Briefings in Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis	Phylogenetics.	Encyclopedia of Parallel Computing	2011	DBLP DOI BibTeX RDF
1	Russell Schwartz	Phylogenetics of Heterogeneous Samples - (Keynote Talk).	ISBRA	2011	DBLP DOI BibTeX RDF
1	Tamir Tuller, Elchanan Mossel	Co-evolution is Incompatible with the Markov Assumption in Phylogenetics	CoRR	2010	DBLP BibTeX RDF
1	Kyle Ira Harrington, Jordan B. Pollack	Robot phylogenetics.	GECCO (Companion)	2010	DBLP DOI BibTeX RDF	phyogenetics, evolutionary algorithms, robotics, evolution, behavior, evolutionary, late breaking abstract
1	Wayne Pfeiffer, Alexandros Stamatakis	Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code.	IPDPS Workshops	2010	DBLP DOI BibTeX RDF
1	Roberto Blanco, Elvira Mayordomo, Esther Montes, Rafael Mayo, Angelines Alberto	Scalable Phylogenetics through Input Preprocessing.	IWPACBB	2010	DBLP DOI BibTeX RDF
1	Marc A. Suchard, Andrew Rambaut	Many-core algorithms for statistical phylogenetics.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Peter J. Humphries, Charles Semple	Note on the hybridization number and subtree distance in phylogenetics.	Appl. Math. Lett.	2009	DBLP DOI BibTeX RDF
1	Mike Steel, Beáta Faller	Markovian log-supermodularity, and its applications in phylogenetics.	Appl. Math. Lett.	2009	DBLP DOI BibTeX RDF
1	Dan Gusfield	Outgoing EIC Editorial for this Special Section of TCBB with the Theme of Phylogenetics.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF
1	Daniel H. Huson, Vincent Moulton, Mike A. Steel	Special Section: Phylogenetics.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF
1	Yasin Bakis, Osman Ugur Sezerman, M. Tekin Babaç, Cem Meydan	Optimization of morphological data in numerical taxonomy analysis using genetic algorithms feature selection method.	GECCO (Companion)	2009	DBLP DOI BibTeX RDF	morphological data, genetic algorithms, optimization, phylogenetics, biological data mining
1	Mukul S. Bansal, Oliver Eulenstein, André Wehe	The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI-Based Local Searches.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	Computational phylogenetics, {tt NNI}, local search, gene-duplication, supertrees
1	David Bryant, Mike A. Steel	Computing the Distribution of a Tree Metric.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	discrete mathematics applications, Robinson-Foulds distance, Poisson approximation, trees, Biology and genetics, phylogenetics, normalization constant
1	Woo-Keun Chung, Hyong-Jun Kim, Hwan-Gue Cho	A web-based comparative visualization system for human endogenous RetroVirus(HERV) on whole genomes.	DTMBIO	2009	DBLP DOI BibTeX RDF	herv, retro viruses, whole genome, visualization
1	Jianting Zhang, Michael Gertz, Le Gruenwald	Efficiently managing large-scale raster species distribution data in PostgreSQL.	GIS	2009	DBLP DOI BibTeX RDF	species distribution data, window query decomposition, query optimization, quadtrees, PostgreSQL
1	Allan Sly	Reconstruction for the Potts model.	STOC	2009	DBLP DOI BibTeX RDF	reconstruction, Potts model
1	Vincent Berry, Christophe Paul, Sylvain Guillemot, François Nicolas	Linear time 3-approximation for the MAST problem.	ACM Transactions on Algorithms	2009	DBLP DOI BibTeX RDF	maximum agreement subtree, maximum compatible subtree, Approximation algorithm, phylogenetic tree
1	Elchanan Mossel, Sébastien Roch, Mike A. Steel	Shrinkage Effect in Ancestral Maximum Likelihood.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	Markov processes, Biology and genetics
1	Hyun Jung Park, Tiffani L. Williams	A Fitness Distance Correlation Measure for Evolutionary Trees.	BICoB	2009	DBLP DOI BibTeX RDF
1	Indra Neil Sarkar, Mary G. Egan, Gloria M. Coruzzi, Ernest K. Lee, Robert DeSalle	Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Johan A. A. Nylander, James C. Wilgenbusch, Dan L. Warren, David L. Swofford	AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics.	Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Jens Gramm, Arfst Nickelsen, Till Tantau	Fixed-Parameter Algorithms in Phylogenetics.	Comput. J.	2008	DBLP DOI BibTeX RDF
1	Neil C. A. Moore, Patrick Prosser	The Ultrametric Constraint and its Application to Phylogenetics.	J. Artif. Intell. Res. (JAIR)	2008	DBLP DOI BibTeX RDF
1	E. O. Wiley	Phylogenetics.	Scholarpedia	2008	DBLP BibTeX RDF
1	Mukul S. Bansal, Oliver Eulenstein	An Omega(n^2/ log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Algorithms, Computational Biology, Phylogenetics, Gene Duplication, Supertrees
1	Philippe Gambette, Daniel H. Huson	Improved Layout of Phylogenetic Networks.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	algorithms, graph drawing, phylogenetics, phylogenetic networks
1	Ravi Vijaya Satya, Amar Mukherjee	The Undirected Incomplete Perfect Phylogeny Problem.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Incomplete Perfect Phylogeny, Phylogenetics, Haplotype Inference, Perfect Phylogeny
1	Zhanshan (Sam) Ma, Axel W. Krings	Survival Analysis Modeling of Phylogenetic and Coalescent Trees.	BMEI	2008	DBLP DOI BibTeX RDF
1	Sen Zhang, Jason Tsong-Li Wang	Discovering Frequent Agreement Subtrees from Phylogenetic Data.	IEEE Trans. Knowl. Data Eng.	2008	DBLP DOI BibTeX RDF	Data mining, Bioinformatics (genome or protein) databases
1	Kevin Buchin, Maike Buchin, Jaroslaw Byrka, Martin Nöllenburg, Yoshio Okamoto, Rodrigo I. Silveira, Alexander Wolff	Drawing (Complete) Binary Tanglegrams.	Graph Drawing	2008	DBLP DOI BibTeX RDF
1	Filip Blagojevic, Xizhou Feng, Kirk W. Cameron, Dimitrios S. Nikolopoulos	Modeling Multigrain Parallelism on Heterogeneous Multi-core Processors: A Case Study of the Cell BE.	HiPEAC	2008	DBLP DOI BibTeX RDF
1	Sebastian Böcker, Quang Bao Anh Bui, Anke Truß	An Improved Fixed-Parameter Algorithm for Minimum-Flip Consensus Trees.	IWPEC	2008	DBLP DOI BibTeX RDF
1	Stefan Grünewald, Andreas Spillner, Kristoffer Forslund, Vincent Moulton	Constructing Phylogenetic Supernetworks from Quartets.	WABI	2008	DBLP DOI BibTeX RDF
1	Laila A. Nahum, Sergio L. Pereira	Phylogenomics, Protein Family Evolution, and the Tree of Life: An Integrated Approach between Molecular Evolution and Computational Intelligence.	Applications of Computational Intelligence in Biology	2008	DBLP DOI BibTeX RDF
1	Alexandros Stamatakis, Filip Blagojevic, Dimitrios S. Nikolopoulos, Christos D. Antonopoulos	Exploring New Search Algorithms and Hardware for Phylogenetics: RAxML Meets the IBM Cell.	VLSI Signal Processing	2007	DBLP DOI BibTeX RDF	RAxML, IBM cell, maximum likelihood, phylogenetic inference
1	Joaquín Tárraga, Ignacio Medina, Leonardo Arbiza, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo	Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics.	Nucleic Acids Research	2007	DBLP DOI BibTeX RDF
1	Jonathan D. Marra, Katherine G. Herbert, Jason T. L. Wang	A study of phylogenetic tools for genomic nomenclature data cleaning.	ITiCSE	2007	DBLP DOI BibTeX RDF	genomic nomenclature, data cleaning, phylogenetics
1	Elchanan Mossel	Distorted Metrics on Trees and Phylogenetic Forests.	IEEE/ACM Trans. Comput. Biology Bioinform.	2007	DBLP DOI BibTeX RDF	CFN, Jukes-Cantor, metric, tree, distortion, Phylogenetics, forest
1	Róbert Busa-Fekete, András Kocsor, Csaba Bagyinka	A Multi-Stack Based Phylogenetic Tree Building Method.	ISBRA	2007	DBLP DOI BibTeX RDF	tree estimation, Multi-Stack, tree-joining operator, Phylogenetics
1	Subhajit Datta, Robert van Engelen, David Gaitros, Neelima Jammigumpula	Experiences with tracking the effects of changing requirements on Morphbank: a web-based bioinformatics application.	ACM Southeast Regional Conference	2007	DBLP DOI BibTeX RDF	design, metrics, analysis
1	Dan Gusfield, Yelena Frid, Daniel G. Brown 0001	Integer Programming Formulations and Computations Solving Phylogenetic and Population Genetic Problems with Missing or Genotypic Data.	COCOON	2007	DBLP DOI BibTeX RDF
1	Sylvain Guillemot, Vincent Berry	Fixed-Parameter Tractability of the Maximum Agreement Supertree Problem.	CPM	2007	DBLP DOI BibTeX RDF
1	Chunfang Zheng, Qian Zhu, David Sankoff	Parts of the Problem of Polyploids in Rearrangement Phylogeny.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
1	Julien Dutheil, Sylvain Gaillard, Eric Bazin, Sylvain Glemin, Vincent Ranwez, Nicolas Galtier, Khalid Belkhir	Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Indra Neil Sarkar	Phylogenetics in the modern era.	Journal of Biomedical Informatics	2006	DBLP DOI BibTeX RDF
1	Carolin Kosiol, Lee Bofkin, Simon Whelan	Phylogenetics by likelihood: Evolutionary modeling as a tool for understanding the genome.	Journal of Biomedical Informatics	2006	DBLP DOI BibTeX RDF
1	Warren A. Hunt Jr., Serita M. Nelesen	Phylogenetic trees in ACL2.	ACL2	2006	DBLP DOI BibTeX RDF	ACL2, phylogenetics
1	Constantinos Daskalakis, Elchanan Mossel, Sébastien Roch	Optimal phylogenetic reconstruction.	STOC	2006	DBLP DOI BibTeX RDF	CFN model, Jukes Cantor, reconstruction problem, phase transitions, phylogenetics, Ising model
1	Xiaoxu Han	Inferring Species Phylogenies: A Microarray Approach.	ICIC	2006	DBLP DOI BibTeX RDF
1	Jonathan Kavanagh, David G. Mitchell, Eugenia Ternovska, Ján Manuch, Xiaohong Zhao, Arvind Gupta	Constructing Camin-Sokal Phylogenies Via Answer Set Programming.	LPAR	2006	DBLP DOI BibTeX RDF	Camin-Sokal, answer set programming, phylogeny, maximum parsimony
1	Mohammed Javeed Zaki	Efficiently Mining Frequent Trees in a Forest: Algorithms and Applications.	IEEE Trans. Knowl. Data Eng.	2005	DBLP DOI BibTeX RDF
1	Shlomo Moran, Sagi Snir	Efficient Approximation of Convex Recolorings.	APPROX-RANDOM	2005	DBLP DOI BibTeX RDF
1	Z. Du, Alexandros Stamatakis, F. Lin, Usman Roshan, Luay Nakhleh	Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood.	HPCC	2005	DBLP DOI BibTeX RDF
1	Adam Arvelakis, Martin Reczko, Alexandros Stamatakis, Alkiviadis Symeonidis, Ioannis G. Tollis	Using Treemaps to Visualize Phylogenetic Trees.	ISBMDA	2005	DBLP DOI BibTeX RDF
1	Shlomo Moran, Sagi Snir	Convex Recolorings of Strings and Trees: Definitions, Hardness Results and Algorithms.	WADS	2005	DBLP DOI BibTeX RDF
1	Serkan Hosten, Amit Khetan, Bernd Sturmfels	Solving the Likelihood Equations.	Foundations of Computational Mathematics	2005	DBLP DOI BibTeX RDF	Maximum likelihood degree, Syzygies, Maximum likelihood, Phylogenetic trees
1	Emmanuel Paradis, Julien Claude, Korbinian Strimmer	APE: Analyses of Phylogenetics and Evolution in R language.	Bioinformatics	2004	DBLP DOI BibTeX RDF
1	Arvind Gupta, Ján Manuch, Ladislav Stacho, Chenchen Zhu	Small Phylogeny Problem: Character Evolution Trees.	CPM	2004	DBLP DOI BibTeX RDF
1	Jian Shen, Robert B. Heckendorn	Discrete Branch Length Representations for Genetic Algorithms in Phylogenetic Search.	EvoWorkshops	2004	DBLP DOI BibTeX RDF
1	Gianluigi Cardinali, Francesco Maraziti, Sabrina Selvi	Electrophoretic data classification for phylogenetics and biostatistics.	Bioinformatics	2003	DBLP DOI BibTeX RDF
1	Heiko A. Schmidt, Ekkehard Petzold, Martin Vingron, Arndt von Haeseler	Molecular phylogenetics: parallelized parameter estimation and quartet puzzling.	J. Parallel Distrib. Comput.	2003	DBLP DOI BibTeX RDF
1	Yong-Hyuk Kim, Seung-Kyu Lee, Byung Ro Moon	Optimizing the Order of Taxon Addition in Phylogenetic Tree Construction Using Genetic Algorithm.	GECCO	2003	DBLP DOI BibTeX RDF
1	Bernard M. E. Moret, David A. Bader, Tandy Warnow	High-Performance Algorithm Engineering for Computational Phylogenetics.	The Journal of Supercomputing	2002	DBLP DOI BibTeX RDF
1	Bernard M. E. Moret, Li-San Wang, Tandy Warnow	Toward New Software for Computational Phylogenetics.	IEEE Computer	2002	DBLP DOI BibTeX RDF
1	M. Zilversmit, P. O'Grady, Robert DeSalle	Shallow Genomics, Phylogenetics, and Evolution in the Family Drosophilidae.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
1	Scott Stanley, Benjamin A. Salisbury	Phylogenetic Genomics and Genomic Phylogenetics - Session Introduction.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF
1	Ganeshkumar Ganapathy, Tandy Warnow	Approximating the Complement of the Maximum Compatible Subset of Leaves of k Trees.	APPROX	2002	DBLP DOI BibTeX RDF
1	Bernard M. E. Moret, Usman Roshan, Tandy Warnow	Sequence-Length Requirements for Phylogenetic Methods.	WABI	2002	DBLP DOI BibTeX RDF
1	Alexei Drummond, Korbinian Strimmer	PAL: an object-oriented programming library for molecular evolution and phylogenetics.	Bioinformatics	2001	DBLP DOI BibTeX RDF
1	Jennifer E. Steinbachs, Paul E. Kearney	Phylogenetics in the Post-Genomic Era - Session Introduction.	Pacific Symposium on Biocomputing	2001	DBLP BibTeX RDF
1	Bernard M. E. Moret, David A. Bader, Tandy Warnow	High-Performance Algorithm Engineering for Computational Phylogenetics.	International Conference on Computational Science	2001	DBLP DOI BibTeX RDF
1	Jonathan H. Badger, Paul E. Kearney	Picking fruit from the tree of life: comments on taxonomic sampling and quartet methods.	SAC	2001	DBLP DOI BibTeX RDF	quarter methods, taxonomic sampling, phylogenetics
1	Tim Massingham, Nick Goldman	EDIBLE: experimental design and information calculations in phylogenetics.	Bioinformatics	2000	DBLP DOI BibTeX RDF
1	Bernard M. E. Moret, Tandy Warnow	Reconstructing Optimal Phylogenetic Trees: A Challenge in Experimental Algorithmics.	Experimental Algorithmics	2000	DBLP DOI BibTeX RDF
1	Mark J. Clement, Quinn Snell, Glenn Judd, Michael Whiting	High Performance Phylogenetic Inference. (PDF / PS)	HPDC	1999	DBLP DOI BibTeX RDF
1	André Goffeau	Informatics, genomics, proteomics and phylogenetics by the yeast Eurofanatics.	German Conference on Bioinformatics	1997	DBLP BibTeX RDF