Search results for "phylogenies"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
2	Max H. Garzon, Tit-Yee Wong, Vinhthuy T. Phan	DNA Chips for Species Identification and Biological Phylogenies.	DNA	2009	DBLP DOI BibTeX RDF	DNA codeword design, noncrosshybridizing oligonucleotide bases, genomic signatures, DNA chips, 16S rRNA tree of life, phylogenetic analysis
2	Xiaoxu Han	Inferring Species Phylogenies: A Microarray Approach.	ICIC	2006	DBLP DOI BibTeX RDF
2	Elchanan Mossel, Sébastien Roch	Learning nonsingular phylogenies and hidden Markov models.	STOC	2005	DBLP DOI BibTeX RDF	hidden Markov models, PAC learning, evolutionary trees, phylogenetic reconstruction
1	Masashi Kiyomi, Yoshio Okamoto, Toshiki Saitoh	Efficient Enumeration of the Directed Binary Perfect Phylogenies from Incomplete Data	CoRR	2012	DBLP BibTeX RDF
1	Max H. Garzon, Tit-Yee Wong	DNA chips for species identification and biological phylogenies.	Natural Computing	2011	DBLP DOI BibTeX RDF
1	Brad Shutters, David Fernández-Baca	A Simple Characterization of the Minimal Obstruction Sets for Three-State Perfect Phylogenies	CoRR	2011	DBLP BibTeX RDF
1	Deeparnab Chakrabarty, Sampath Kannan	Variance on the Leaves of a Tree Markov Random Field: Detecting Character Dependencies in Phylogenies	CoRR	2011	DBLP BibTeX RDF
1	Constantinos Daskalakis, Elchanan Mossel, Sébastien Roch	Phylogenies without Branch Bounds: Contracting the Short, Pruning the Deep.	SIAM J. Discrete Math.	2011	DBLP DOI BibTeX RDF
1	Daniele Catanzaro	Estimating Phylogenies from Molecular Data.	Mathematical Approaches to Polymer Sequence Analysis and Related Problems	2011	DBLP DOI BibTeX RDF
1	Yann Christinat, Bernard M. E. Moret	Inferring Transcript Phylogenies.	BIBM	2011	DBLP DOI BibTeX RDF
1	Yu Lin, Vaibhav Rajan, Bernard M. E. Moret	Bootstrapping Phylogenies Inferred from Rearrangement Data.	WABI	2011	DBLP DOI BibTeX RDF
1	Rob Gysel, Fumei Lam, Dan Gusfield	Constructing Perfect Phylogenies and Proper Triangulations for Three-State Characters.	WABI	2011	DBLP DOI BibTeX RDF
1	Jian Shi, Yiwei Zhang, Haiwei Luo, Jijun Tang	Using jackknife to assess the quality of gene order phylogenies.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Steven W. Kembel, Peter D. Cowan, Matthew R. Helmus, William K. Cornwell, Helene Morlon, David D. Ackerly, Simon P. Blomberg, Campbell O. Webb	Picante: R tools for integrating phylogenies and ecology.	Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Xiaoxu Han	Infer Species Phylogenies Using Self-Organizing Maps.	IJKDB	2010	DBLP DOI BibTeX RDF
1	Max H. Garzon, Tit-Yee Wong	Search and Validation of Short Genome-Wide Biomarkers for Bacterial Biological Phylogenies.	DNA	2010	DBLP DOI BibTeX RDF
1	Waldo Cancino Ticona, Laetitia Jourdan, El-Ghazali Talbi, Alexandre C. B. Delbem	Parallel Multi-Objective Approaches for Inferring Phylogenies.	EvoBIO	2010	DBLP DOI BibTeX RDF
1	David Hall, Dan Klein	Finding Cognate Groups Using Phylogenies.	ACL	2010	DBLP BibTeX RDF
1	Kay Hamacher	Protein Domain Phylogenies - Information Theory and Evolutionary Dynamics.	BIOINFORMATICS	2010	DBLP BibTeX RDF
1	Guan Ning Lin, Zhipeng Cai, Guohui Lin, Sounak Chakraborty, Dong Xu	ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Jesse D. Bloom, Matthew J. Glassman	Inferring Stabilizing Mutations from Protein Phylogenies: Application to Influenza Hemagglutinin.	PLoS Computational Biology	2009	DBLP DOI BibTeX RDF
1	Constantinos Daskalakis, Elchanan Mossel, Sébastien Roch	Phylogenies without Branch Bounds: Contracting the Short, Pruning the Deep.	RECOMB	2009	DBLP DOI BibTeX RDF
1	Thomas Eiter, Esra Erdem, Halit Erdogan, Michael Fink	Finding Similar or Diverse Solutions in Answer Set Programming.	ICLP	2009	DBLP DOI BibTeX RDF	similar/diverse solutions, answer set programming, phylogenies
1	Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller	Parsimony Score of Phylogenetic Networks: Hardness Results and a Linear-Time Heuristic.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	hardness and approximation, phylogenetic networks, Maximum parsimony, horizontal gene transfer
1	Yongjin Park, Stanley Shackney, Russell Schwartz	Network-Based Inference of Cancer Progression from Microarray Data.	IEEE/ACM Trans. Comput. Biology Bioinform.	2009	DBLP DOI BibTeX RDF	machine learning, trees, Biology and genetics, graphs and networks
1	Roberto Blanco, Elvira Mayordomo	ZARAMIT: A System for the Evolutionary Study of Human Mitochondrial DNA.	IWANN	2009	DBLP DOI BibTeX RDF
1	María Jesús García-Pereira, Humberto Quesada, Armando Caballero	A First Insight into the In Silico Evaluation of the Accuracy of AFLP Markers for Phylogenetic Reconstruction.	IWANN	2009	DBLP DOI BibTeX RDF	AFLP, homoplasy, simulation, accuracy, phylogenetic analysis
1	Dan Gusfield	The Multi-State Perfect Phylogeny Problem with Missing and Removable Data: Solutions via Integer-Programming and Chordal Graph Theory.	RECOMB	2009	DBLP DOI BibTeX RDF	graph triangulation, integer programming, computational biology, chordal graphs, phylogenetics, perfect phylogeny
1	Michael Elberfeld, Ilka Schnoor, Till Tantau	Influence of Tree Topology Restrictions on the Complexity of Haplotyping with Missing Data.	TAMC	2009	DBLP DOI BibTeX RDF
1	Pedro Feijão, João Meidanis	SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy.	WABI	2009	DBLP DOI BibTeX RDF
1	M. Shel Swenson, François Barbançon, C. Randal Linder, Tandy Warnow	A Simulation Study Comparing Supertree and Combined Analysis Methods Using SMIDGen.	WABI	2009	DBLP DOI BibTeX RDF
1	Travis J. Wheeler	Large-Scale Neighbor-Joining with NINJA.	WABI	2009	DBLP DOI BibTeX RDF	Phylogeny inference, external memory, Neighbor joining
1	Chris Whidden, Norbert Zeh	A Unifying View on Approximation and FPT of Agreement Forests.	WABI	2009	DBLP DOI BibTeX RDF
1	Frédéric Guyon, Céline Brochier-Armanet, Alain Guénoche	Comparison of alignment free string distances for complete genome phylogeny.	Adv. Data Analysis and Classification	2009	DBLP DOI BibTeX RDF	Mathematics Subject Classification (2000) 05C05, 68R15, 92B10, 90C27
1	Radu Mihaescu, Dan Levy, Lior Pachter	Why Neighbor-Joining Works.	Algorithmica	2009	DBLP DOI BibTeX RDF	Distance methods, Edge radius, Quartets, Neighbor-joining
1	Zhihong Ding, Thomas Mailund, Yun S. Song	Efficient whole-genome association mapping using local phylogenies for unphased genotype data.	Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Gang Wu, Ming-Yang Kao, Guohui Lin, Jia-Huai You	Reconstructing phylogenies from noisy quartets in polynomial time with a high success probability.	Algorithms for Molecular Biology	2008	DBLP DOI BibTeX RDF
1	Jaime Huerta-Cepas, Anibal Bueno, Joaquín Dopazo, Toni Gabaldón	PhylomeDB: a database for genome-wide collections of gene phylogenies.	Nucleic Acids Research	2008	DBLP DOI BibTeX RDF
1	Magnus Bordewich, Catherine McCartin, Charles Semple	A 3-approximation algorithm for the subtree distance between phylogenies.	J. Discrete Algorithms	2008	DBLP DOI BibTeX RDF
1	Michael Elberfeld, Till Tantau	Computational Complexity of Perfect-Phylogeny-Related Haplotyping Problems.	MFCS	2008	DBLP DOI BibTeX RDF	circuit classes, computational complexity, bioinformatics, haplotyping, perfect phylogenies
1	Zhi-Zhong Chen	Approximation Algorithms for Bounded Degree Phylogenetic Roots.	Algorithmica	2008	DBLP DOI BibTeX RDF	Phylogenetic roots, Approximation algorithms, Randomized algorithms, Graph algorithms, Computational biology, Phylogenies
1	Srinath Sridhar, Fumei Lam, Guy E. Blelloch, R. Ravi, Russell Schwartz	Mixed Integer Linear Programming for Maximum-Parsimony Phylogeny Inference.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	Phylogenetic tree reconstruction, Algorithms, Integer Linear Programming, Computational Biology, Steiner tree problem, Maximum parsimony
1	Sébastien Roch	Sequence Length Requirement of Distance-Based Phylogeny Reconstruction: Breaking the Polynomial Barrier.	FOCS	2008	DBLP DOI BibTeX RDF
1	Mariana Kant, Maurice LeBon, David Sankoff	Hierarchical Clustering Using Constraints.	ISBRA	2008	DBLP DOI BibTeX RDF
1	Yongjin Park, Stanley Shackney, Russell Schwartz	Network-Based Inference of Cancer Progression from Microarray Data.	ISBRA	2008	DBLP DOI BibTeX RDF
1	Mukul S. Bansal, Jianrong Dong, David Fernández-Baca	Comparing and Aggregating Partially Resolved Trees.	LATIN	2008	DBLP DOI BibTeX RDF
1	Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen	Rapid Neighbour-Joining.	WABI	2008	DBLP DOI BibTeX RDF
1	Xiuwei Zhang, Bernard M. E. Moret	Boosting the Performance of Inference Algorithms for Transcriptional Regulatory Networks Using a Phylogenetic Approach.	WABI	2008	DBLP DOI BibTeX RDF
1	Yingqin Luo, Cong Fu, Da-Yong Zhang, Kui Lin	BPhyOG: An interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Ilan Gronau, Shlomo Moran	On the hardness of inferring phylogenies from triplet-dissimilarities.	Theor. Comput. Sci.	2007	DBLP DOI BibTeX RDF
1	Ilan Gronau, Shlomo Moran	Neighbor Joining Algorithms for Inferring Phylogenies via LCA Distances.	Journal of Computational Biology	2007	DBLP DOI BibTeX RDF
1	Gregory Pennington, Charles A. Smith, Stanley Shackney, Russell Schwartz	Reconstructing Tumor phylogenies from Heterogeneous Single-Cell Data.	J. Bioinformatics and Computational Biology	2007	DBLP DOI BibTeX RDF
1	Hyrum Carroll, Perry Ridge, Mark J. Clement, Quinn Snell	Phylogenies scores for exhaustive searches and parsimony scores searches.	IJBRA	2007	DBLP DOI BibTeX RDF
1	Lukasz Bolikowski, Anna Gambin	New Metrics for Phylogenies.	Fundam. Inform.	2007	DBLP BibTeX RDF
1	Jens Gramm, Till Nierhoff, Roded Sharan, Till Tantau	Haplotyping with missing data via perfect path phylogenies.	Discrete Applied Mathematics	2007	DBLP DOI BibTeX RDF
1	Bhalchandra D. Thatte	A correct proof of the McMorris-Powers' theorem on the consensus of phylogenies.	Discrete Applied Mathematics	2007	DBLP DOI BibTeX RDF
1	José E. Gallardo, Carlos Cotta, Antonio J. Fernández	Reconstructing Phylogenies with Memetic Algorithms and Branch-and-Bound.	Analysis of Biological Data: A Soft Computing Approach	2007	DBLP BibTeX RDF
1	Srinath Sridhar, Kedar Dhamdhere, Guy E. Blelloch, Eran Halperin, R. Ravi, Russell Schwartz	Algorithms for Efficient Near-Perfect Phylogenetic Tree Reconstruction in Theory and Practice.	IEEE/ACM Trans. Comput. Biology Bioinform.	2007	DBLP DOI BibTeX RDF	trees, biology and genetics, computations on discrete structures
1	Nabil Abdennadher, Régis Boesch	Deploying PHYLIP phylogenetic package on a Large Scale Distributed System.	CCGRID	2007	DBLP DOI BibTeX RDF
1	Jason D. Bakos	FPGA Acceleration of Gene Rearrangement Analysis.	FCCM	2007	DBLP DOI BibTeX RDF
1	Love Singhal, Elaheh Bozorgzadeh	Heterogeneous Floorplanner for FPGA.	FCCM	2007	DBLP DOI BibTeX RDF
1	Mary Qu Yang, James Taylor, Laura Elnitski	Rigorous Mapping of Orthologous Bidirectional Promoters in Vertebrates Defines their Evolutionary History.	IMSCCS	2007	DBLP DOI BibTeX RDF
1	Mauricio Martínez, Edgar E. Vallejo, Enrique Morett	Ancestral DNA Sequence Reconstruction Using Recursive Genetic Algorithms.	ACAL	2007	DBLP DOI BibTeX RDF
1	Benny Chor, Michael R. Fellows, Mark A. Ragan, Igor Razgon, Frances A. Rosamond, Sagi Snir	Connected Coloring Completion for General Graphs: Algorithms and Complexity.	COCOON	2007	DBLP DOI BibTeX RDF	Topics Algorithms and Complexity, Bioinformatics
1	Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao	Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple Galls.	ISBRA	2007	DBLP DOI BibTeX RDF
1	Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller	A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance.	ISBRA	2007	DBLP DOI BibTeX RDF
1	Daniel Goodman, Noah Ollikainen, Chris Sholley	Baculovirus Phylogeny Based on Genome Rearrangements.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
1	Daniel R. Brooks, Esra Erdem, Selim T. Erdogan, James W. Minett, Donald Ringe	Inferring Phylogenetic Trees Using Answer Set Programming.	J. Autom. Reasoning	2007	DBLP DOI BibTeX RDF	Cladistics, Answer set programming, Phylogeny
1	Thomas Mailund, Søren Besenbacher, Mikkel H. Schierup	Whole genome association mapping by incompatibilities and local perfect phylogenies.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Jonathan P. Bollback	SIMMAP: Stochastic character mapping of discrete traits on phylogenies.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Alexander F. Auch, Stefan R. Henz, Barbara R. Holland, Markus Göker	Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Maria Luisa Bonet, Katherine St. John, Ruchi Mahindru, Nina Amenta	Approximating Subtree Distances Between Phylogenies.	Journal of Computational Biology	2006	DBLP DOI BibTeX RDF
1	Paul J. Planet	Tree disagreement: Measuring and testing incongruence in phylogenies.	Journal of Biomedical Informatics	2006	DBLP DOI BibTeX RDF
1	Jonathan Kavanagh, David G. Mitchell, Eugenia Ternovska, Ján Manuch, Xiaohong Zhao, Arvind Gupta	Constructing Camin-Sokal Phylogenies Via Answer Set Programming.	LPAR	2006	DBLP DOI BibTeX RDF	Camin-Sokal, answer set programming, phylogeny, maximum parsimony
1	Ravi Vijaya Satya, Amar Mukherjee, Gabriela Alexe, Laxmi Parida, Gyan Bhanot	Constructing Near-Perfect Phylogenies with multiple homoplasy events.	ISMB (Supplement of Bioinformatics)	2006	DBLP DOI BibTeX RDF
1	Justin Ma, John Dunagan, Helen J. Wang, Stefan Savage, Geoffrey M. Voelker	Finding diversity in remote code injection exploits.	Internet Measurement Conference	2006	DBLP DOI BibTeX RDF	binary emulation, malware classification, worms, phylogeny, bots
1	Xizhou Feng, Kirk W. Cameron, Duncan A. Buell	Biology - PBPI: a high performance implementation of Bayesian phylogenetic inference.	SC	2006	DBLP DOI BibTeX RDF
1	Sen Zhang, Katherine G. Herbert, Jason T. L. Wang, William H. Piel, David R. B. Stockwell	PhyloMiner: A Tool for Evolutionary Data Analysis.	SSDBM	2006	DBLP DOI BibTeX RDF
1	Vincent Berry, François Nicolas	Improved Parameterized Complexity of the Maximum Agreement Subtree and Maximum Compatible Tree Problems.	IEEE/ACM Trans. Comput. Biology Bioinform.	2006	DBLP DOI BibTeX RDF	algorithms, pattern matching, trees, consensus, compatibility, fixed-parameter tractability, Phylogenetics
1	Waldo Cancino Ticona, Alexandre C. B. Delbem	A Multi-objective Evolutionary Approach for Phylogenetic Inference.	EMO	2006	DBLP DOI BibTeX RDF	Genetic Algorithms, Multi-Objective Optimization, Phylogenetic Inference
1	Guy E. Blelloch, Kedar Dhamdhere, Eran Halperin, R. Ravi, Russell Schwartz, Srinath Sridhar	Fixed Parameter Tractability of Binary Near-Perfect Phylogenetic Tree Reconstruction.	ICALP	2006	DBLP DOI BibTeX RDF
1	Srinath Sridhar, Kedar Dhamdhere, Guy E. Blelloch, Eran Halperin, R. Ravi, Russell Schwartz	Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees.	International Conference on Computational Science	2006	DBLP DOI BibTeX RDF
1	Xiaoxu Han	Multispecies Gene Entropy Estimation, a Data Mining Approach.	Industrial Conference on Data Mining	2006	DBLP DOI BibTeX RDF
1	Md. Enamul Karim, Laxmi Parida, Arun Lakhotia	Using Permutation Patterns for Content-Based Phylogeny.	PRIB	2006	DBLP DOI BibTeX RDF
1	Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, Olivier Gascuel	Evolution of Tandemly Repeated Sequences Through Duplication and Inversion.	Comparative Genomics	2006	DBLP DOI BibTeX RDF	gene family, gene order, inversion, phylogeny, duplication
1	Barbara Holland, Glenn Conner, Katharina T. Huber, Vincent Moulton	Imputing Supertrees and Supernetworks from Quartets.	WABI	2006	DBLP DOI BibTeX RDF
1	Didier Fraix-Burnet, Philippe Choler, Emmanuel J. P. Douzery, Anne Verhamme	Astrocladistics: A Phylogenetic Analysis of Galaxy Evolution II. Formation and Diversification of Galaxies.	J. Classification	2006	DBLP DOI BibTeX RDF
1	Didier Fraix-Burnet, Philippe Choler, Emmanuel J. P. Douzery, Anne Verhamme	Astrocladistics: A Phylogenetic Analysis of Galaxy Evolution I. Character Evolutions and Galaxy Histories.	J. Classification	2006	DBLP DOI BibTeX RDF
1	Le Sy Vinh, Arndt von Haeseler	Shortest triplet clustering: reconstructing large phylogenies using representative sets.	BMC Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Sergei L. Kosakovsky Pond, Simon D. W. Frost, Spencer V. Muse	HyPhy: hypothesis testing using phylogenies.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Bui Quang Minh, Le Sy Vinh, Arndt von Haeseler, Heiko A. Schmidt	pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Priscilla Carvalho, José Alexandre Felizola Diniz-Filho, Luis Mauricio Bini	The impact of Felsenstein's "Phylogenies and the comparative method" on evolutionary biology.	Scientometrics	2005	DBLP DOI BibTeX RDF
1	Elchanan Mossel, Sébastien Roch	Learning nonsingular phylogenies and hidden Markov models	CoRR	2005	DBLP BibTeX RDF
1	Matthias Wolf, Joachim Friedrich, Thomas Dandekar, Tobias Müller	CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures.	In Silico Biology	2005	DBLP BibTeX RDF
1	F. James Rohlf	J. Felsenstein, Inferring Phylogenies, Sinauer Assoc., 2004, pp. xx + 664.	J. Classification	2005	DBLP DOI BibTeX RDF
1	Xiaoxu Han	A Machine Leaning Approach to Resolving Incongruence in Molecular Phylogenies and Visualization Analysis.	CIBCB	2005	DBLP BibTeX RDF
1	Tiffani Williams, Marc Smith	Cooperative Rec-I-DCM3: A Population-Based Approach for Reconstructing Phylogenies.	CIBCB	2005	DBLP BibTeX RDF
1	David Burstein, Igor Ulitsky, Tamir Tuller, Benny Chor	Information Theoretic Approaches to Whole Genome Phylogenies.	RECOMB	2005	DBLP DOI BibTeX RDF	Phylogenomics, whole genome and proteom phylogenetic, tree reconstruction, Kullback-Leibler relative entropy, divergence, distance matrix
1	Jijun Tang, Li-San Wang	Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony.	BIBE	2005	DBLP DOI BibTeX RDF
1	Andreas Kramer, Daniel R. Richards, James O. Bowlby, Ramon M. Felciano	Consensus Methods Using Phylogenetic Databases.	CSB Workshops	2005	DBLP DOI BibTeX RDF