Search results for "protein function prediction"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
3	Yiming Chen, Zhoujun Li, Junwan Liu	Learning Kernel Matrix from Gene Ontology and Annotation Data for Protein Function Prediction.	ISNN	2009	DBLP DOI BibTeX RDF	Diffusion kernel, Gene ontology, Protein function prediction
2	Thomas Lingner, Peter Meinicke	Fast Target Set Reduction for Large-Scale Protein Function Prediction: A Multi-class Multi-label Machine Learning Approach.	WABI	2008	DBLP DOI BibTeX RDF	Pfam, target set reduction, machine learning, large-scale, protein classification, multi-class, metagenomics, homology search, protein function prediction, multi-label
2	Andrew Secker, Matthew N. Davies, Alex Alves Freitas, Jonathan Timmis, Edward Clark, Darren R. Flower	An Artificial Immune System for Evolving Amino Acid Clusters Tailored to Protein Function Prediction.	ICARIS	2008	DBLP DOI BibTeX RDF	data mining, clustering, classification, bioinformatics, artificial immune systems
2	Miao Wang, Xuequn Shang, Zhanhuai Li	Sequential Pattern Mining for Protein Function Prediction.	ADMA	2008	DBLP DOI BibTeX RDF	frequent closed pattern, frequent pattern classifier, frequent pattern mining, protein function prediction
2	Saket Kharsikar, Dale Mugler, Daniel Sheffer, Francisco Moore, Zhong-Hui Duan	A Weighted k-Nearest Neighbor Method for Gene Ontology Based Protein Function Prediction.	IMSCCS	2007	DBLP DOI BibTeX RDF
1	Xiao-Fei Zhang, Dao-Qing Dai	A Framework for Incorporating Functional Interrelationships into Protein Function Prediction Algorithms.	IEEE/ACM Trans. Comput. Biology Bioinform.	2012	DBLP DOI BibTeX RDF
1	Hua Wang, Heng Huang, Chris H. Q. Ding	Function-Function Correlated Multi-Label Protein Function Prediction over Interaction Networks.	RECOMB	2012	DBLP DOI BibTeX RDF
1	Xiaoxiao Chi, Jingyu Hou	An Iterative Approach of Protein Function Prediction.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Jingyan Wang, Yongping Li	Sequential Linear Neighborhood Propagation for Semi-Supervised protein Function Prediction.	J. Bioinformatics and Computational Biology	2011	DBLP DOI BibTeX RDF
1	Limsoon Wong	Introduction - Some New Results and Tools for Protein Function Prediction, RNA Target Site Prediction, Genotype Calling, Environmental Genomics, and More.	J. Bioinformatics and Computational Biology	2011	DBLP DOI BibTeX RDF
1	Ziyang Chen, Zhao Cai, Min Li, Binbin Liu	Using search engine technology for protein function prediction.	IJBRA	2011	DBLP DOI BibTeX RDF
1	Limsoon Wong	Using Biological Networks in Protein Function Prediction and Gene Expression Analysis.	Internet Mathematics	2011	DBLP DOI BibTeX RDF
1	Jong Cheol Jeong, Xiaotong Lin, Xue-wen Chen	On Position-Specific Scoring Matrix for Protein Function Prediction.	IEEE/ACM Trans. Comput. Biology Bioinform.	2011	DBLP DOI BibTeX RDF
1	Carlos Nascimento Silla Jr., Alex Alves Freitas	Selecting different protein representations and classification algorithms in hierarchical protein function prediction.	Intell. Data Anal.	2011	DBLP DOI BibTeX RDF
1	Yanjun Qi, William Stafford Noble	Protein Interaction Networks: Protein Domain Interaction and Protein Function Prediction.	Handbook of Statistical Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Yinan Lu, Yan Zhao, Xiaoni Liu, Yong Quan	Fuzzy Integral Based Data Fusion for Protein Function Prediction.	ICSI	2011	DBLP DOI BibTeX RDF
1	Jingyan Wang, Yongping Li, Ying Zhang, Jianhua He	Semi-supervised Protein Function Prediction via Sequential Linear Neighborhood Propagation.	ICIC	2011	DBLP DOI BibTeX RDF
1	Peipei Li, Lyong Heo, Meijing Li, Keun Ho Ryu, Gouchol Pok	Protein function prediction using frequent patterns in protein-protein interaction networks.	FSKD	2011	DBLP DOI BibTeX RDF
1	Kire Trivodaliev, Ivana Cingovska, Slobodan Kalajdziski	Protein Function Prediction by Spectral Clustering of Protein Interaction Network.	FGIT-DTA/BSBT	2011	DBLP DOI BibTeX RDF
1	Ricardo Cerri, André Carlos Ponce Leon Ferreira de Carvalho	Hierarchical Multilabel Protein Function Prediction Using Local Neural Networks.	BSB	2011	DBLP DOI BibTeX RDF
1	Jonathan Q. Jiang	Multi-label Correlated Semi-supervised Learning for Protein Function Prediction.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Fernando E. B. Otero, Alex Alves Freitas, Colin G. Johnson	A hierarchical multi-label classification ant colony algorithm for protein function prediction.	Memetic Computing	2010	DBLP DOI BibTeX RDF
1	Drew H. Bryant, Mark Moll, Brian Y. Chen, Viacheslav Fofanov, Lydia E. Kavraki	Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Alex Alves Freitas, Daniela Wieser, Rolf Apweiler	On the Importance of Comprehensible Classification Models for Protein Function Prediction.	IEEE/ACM Trans. Comput. Biology Bioinform.	2010	DBLP DOI BibTeX RDF
1	Matteo Re, Giorgio Valentini	An Experimental Comparison of Hierarchical Bayes and True Path Rule Ensembles for Protein Function Prediction.	MCS	2010	DBLP DOI BibTeX RDF
1	Gaurav Pandey, Chad L. Myers, Vipin Kumar	Incorporating functional inter-relationships into protein function prediction algorithms.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Shahla Nemati, Mohammad Ehsan Basiri, Nasser Ghasem-Aghaee, Mehdi Hosseinzadeh Aghdam	A novel ACO-GA hybrid algorithm for feature selection in protein function prediction.	Expert Syst. Appl.	2009	DBLP DOI BibTeX RDF
1	Meghana Chitale, Troy Hawkins, Changsoon Park, Daisuke Kihara	ESG: extended similarity group method for automated protein function prediction.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Curtis Huttenhower, Matthew A. Hibbs, Chad L. Myers, Amy A. Caudy, David C. Hess, Olga G. Troyanskaya	The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Deepak Bandyopadhyay, Jun Huan, Jan Prins, Jack Snoeyink, Wei Wang 0010, Alexander Tropsha	Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development.	Journal of Computer-Aided Molecular Design	2009	DBLP DOI BibTeX RDF
1	Deepak Bandyopadhyay, Jun Huan, Jan Prins, Jack Snoeyink, Wei Wang 0010, Alexander Tropsha	Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications.	Journal of Computer-Aided Molecular Design	2009	DBLP DOI BibTeX RDF
1	Jeffrey Skolnick, Michal Brylinski	FINDSITE: a combined evolution/structure-based approach to protein function prediction.	Briefings in Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Fernando E. B. Otero, Marc Segond, Alex Alves Freitas, Colin G. Johnson, Denis Robilliard, Cyril Fonlupt	An Empirical Evaluation of the Effectiveness of Different Types of Predictor Attributes in Protein Function Prediction.	Foundations of Computational Intelligence	2009	DBLP DOI BibTeX RDF
1	Lei Shi, Young-Rae Cho, Aidong Zhang	ANN Based Protein Function Prediction Using Integrated Protein-Protein Interaction Data.	IJCBS	2009	DBLP DOI BibTeX RDF
1	Appala Raju Kotaru, Ramesh C. Joshi	Classification of Phylogenetic Profiles for Protein Function Prediction: An SVM Approach.	IC3	2009	DBLP DOI BibTeX RDF
1	Valerio Freschi	A Graph-Based Semi-supervised Algorithm for Protein Function Prediction from Interaction Maps.	LION	2009	DBLP DOI BibTeX RDF
1	Fernando E. B. Otero, Alex Alves Freitas, Colin G. Johnson	A Hierarchical Classification Ant Colony Algorithm for Predicting Gene Ontology Terms.	EvoBIO	2009	DBLP DOI BibTeX RDF	Hierarchical classification, ant colony optimisation, protein function prediction
1	Nicholas Holden, Alex Alves Freitas	Hierarchical classification of protein function with ensembles of rules and particle swarm optimisation.	Soft Comput.	2009	DBLP DOI BibTeX RDF	Hierarchical classification, Particle swarm optimisation, Protein function prediction
1	Landon Detwiler, Wolfgang Gatterbauer, Brenton Louie, Dan Suciu, Peter Tarczy-Hornoch	Integrating and Ranking Uncertain Scientific Data.	ICDE	2009	DBLP DOI BibTeX RDF
1	Tsuyoshi Kato, Hisashi Kashima, Masashi Sugiyama	Robust Label Propagation on Multiple Networks.	IEEE Transactions on Neural Networks	2009	DBLP DOI BibTeX RDF
1	Gowtham Atluri, Rohit Gupta, Gang Fang, Gaurav Pandey, Michael Steinbach, Vipin Kumar	Association Analysis Techniques for Bioinformatics Problems.	BICoB	2009	DBLP DOI BibTeX RDF	Data Mining, Bioinformatics, Frequent Pattern Mining, Association Analysis
1	Marcel H. Schulz, Sebastian Köhler, Sebastian Bauer, Martin Vingron, Peter N. Robinson	homepages/84/1721 journals/jiis/BarbanconM07 conf/fqas/BarbanconM04 conf/bibe/NakhlehMBPD03 conf/ideas/BarbanconM02 Exact Score Distribution Computation for Similarity Searches in Ontologies.	WABI	2009	DBLP DOI BibTeX RDF
1	Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich Rebholz-Schuhmann	Integrating protein-protein interactions and text mining for protein function prediction.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Aaron Gabow, Sonia M. Leach, William A. Baumgartner Jr., Lawrence Hunter, Debra Goldberg	Improving protein function prediction methods with integrated literature data.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, Eric D. Kolaczyk	Integration of relational and hierarchical network information for protein function prediction.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Liang Sun, Shuiwang Ji, Jieping Ye	Adaptive diffusion kernel learning from biological networks for protein function prediction.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Anika Jöcker, Fabian Hoffmann, Andreas Groscurth, Heiko Schoof	Protein function prediction and annotation in an integrated environment powered by web services (AFAWE).	Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Xing-Ming Zhao, Luonan Chen, Kazuyuki Aihara	Protein function prediction with the shortest path in functional linkage graph and boosting.	IJBRA	2008	DBLP DOI BibTeX RDF
1	Ulf Leser, Philip Groth, Bertram Weiss, Hans-Dieter Pohlenz	Mining Phenotypes for Protein Function Prediction.	Ontologies and Text Mining for Life Sciences	2008	DBLP BibTeX RDF
1	Mustafa Kirac, Gultekin Özsoyoglu	Protein Function Prediction Based on Patterns in Biological Networks.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Nicholas Holden, Alex Alves Freitas	Improving the Performance of Hierarchical Classification with Swarm Intelligence.	EvoBIO	2008	DBLP DOI BibTeX RDF	Data Mining, Hierarchical Classification, Ant Colony Optimisation, Particle Swarm Optimisation, Protein Function Prediction
1	Shuiwang Ji, Lei Tang, Shipeng Yu, Jieping Ye	Extracting shared subspace for multi-label classification.	KDD	2008	DBLP DOI BibTeX RDF	shared subspace, least squares, multi-label classification
1	Limsoon Wong	Guilt by association as a search principle.	SIGIR	2008	DBLP DOI BibTeX RDF	search principle
1	Ankit Agrawal, S. K. Khaitan	A new heuristic for multiple sequence alignment.	EIT	2008	DBLP DOI BibTeX RDF
1	Aboul Ella Hassanien, Mariofanna G. Milanova, Tomasz G. Smolinski, Ajith Abraham	Computational Intelligence in Solving Bioinformatics Problems: Reviews, Perspectives, and Challenges.	Computational Intelligence in Biomedicine and Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Hon Nian Chua, Wing-Kin Sung, Limsoon Wong	An efficient strategy for extensive integration of diverse biological data for protein function prediction.	Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki	The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs.	Journal of Computational Biology	2007	DBLP DOI BibTeX RDF
1	Brian Y. Chen, Drew H. Bryant, Viacheslav Fofanov, David M. Kristensen, Amanda E. Cruess, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki	Cavity Scaling: Automated Refinement of Cavity-Aware motifs in protein Function Prediction.	J. Bioinformatics and Computational Biology	2007	DBLP DOI BibTeX RDF
1	Jin Chen, Wynne Hsu, Mong-Li Lee, See-Kiong Ng	Labeling network motifs in protein interactomes for protein function prediction.	ICDE	2007	DBLP DOI BibTeX RDF
1	Valerio Freschi	Protein function prediction from interaction networks using a random walk ranking algorithm.	BIBE	2007	DBLP DOI BibTeX RDF
1	Gaurav Pandey, Michael Steinbach, Rohit Gupta, Tushar Garg, Vipin Kumar	Association analysis-based transformations for protein interaction networks: a function prediction case study.	KDD	2007	DBLP DOI BibTeX RDF	h-confidence, noise reduction, protein interaction networks, association analysis, protein function prediction
1	Kyle Ira Harrington	Predicting reactions from amino acid sequences in S. cerevisiae: an evolutionary computation approach.	GECCO (Companion)	2007	DBLP DOI BibTeX RDF	GP2, PushGP, Push
1	Torgeir R. Hvidsten, Henryk Jan Komorowski	Rough Sets in Bioinformatics.	T. Rough Sets	2007	DBLP DOI BibTeX RDF
1	Jordi Espadaler, Enrique Querol, Francesc X. Avilés, Baldo Oliva	Identification of function-associated loop motifs and application to protein function prediction.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Hee-Jeong Jin, Hwan-Gue Cho	Computational method for protein function prediction by constructing protein interaction network dictionary.	IJPRAI	2006	DBLP DOI BibTeX RDF
1	Iddo Friedberg	Automated protein function prediction - the genomic challenge.	Briefings in Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki	Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Barbara E. Engelhardt, Michael I. Jordan, Steven E. Brenner	A graphical model for predicting protein molecular function.	ICML	2006	DBLP DOI BibTeX RDF
1	Zhong-Hui Duan, Brent Hughes, Lothar Reichel, Ting Shi	The Relationship between Protein Sequences and their Gene Ontology Functions.	IMSCCS	2006	DBLP DOI BibTeX RDF
1	Hon Nian Chua, Wing-Kin Sung, Limsoon Wong	Exploiting Indirect Neighbours and Topological Weight to Predict Protein Function from Protein-Protein Interactions.	BioDM	2006	DBLP DOI BibTeX RDF
1	Ali Al-Shahib, Rainer Breitling, David Gilbert	Franksum: new feature selection method for protein function prediction.	Int. J. Neural Syst.	2005	DBLP DOI BibTeX RDF
1	Shailesh V. Date, Edward M. Marcotte	Protein function prediction using the Protein Link EXplorer (PLEX).	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Yu Chen, Dong Xu	Genome-Scale Protein Function Prediction in Yeast Saccharomyces cerevisiae Through Integrating Multiple Sources of High-Throughput Data.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
1	Roman Eisner, Brett Poulin, Duane Szafron, Paul Lu, Russell Greiner	Improving Protein Function Prediction Using the Hierarchical Structure of the Gene Ontology.	CIBCB	2005	DBLP BibTeX RDF
1	Karsten M. Borgwardt, Cheng Soon Ong, Stefan Schönauer, S. V. N. Vishwanathan, Alexander J. Smola, Hans-Peter Kriegel	Protein function prediction via graph kernels.	ISMB (Supplement of Bioinformatics)	2005	DBLP DOI BibTeX RDF
1	Md. Altaf-Ul-Amin, Toshihiro Koma, Ken Kurokawa, Shigehiko Kanaya	Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach.	ICDE Workshops	2005	DBLP DOI BibTeX RDF	heuristic method, min-cut, protein function prediction, protein-protein interaction network
1	Doosung Hwang, Ung-Mo Kim, Jaehun Choi, Jeho Park, Jang-Hee Yoo	Predictive Model for Protein Function Using Modular Neural Approach.	ICAPR	2005	DBLP DOI BibTeX RDF
1	Gert R. G. Lanckriet, Minghua Deng, Nello Cristianini, Michael I. Jordan, William Stafford Noble	Kernel-Based Data Fusion and Its Application to Protein Function Prediction in Yeast.	Pacific Symposium on Biocomputing	2004	DBLP BibTeX RDF
1	Ali Al-Shahib, Chao He, Aik Choon Tan, Mark Girolami, David Gilbert	An Assessment of Feature Relevance in Predicting Protein Function from Sequence.	IDEAL	2004	DBLP DOI BibTeX RDF
1	Minghua Deng, Fengzhu Sun, Ting Chen	Assessment of the reliability of protein-protein interactions and protein function prediction.	Pacific Symposium on Biocomputing	2003	DBLP BibTeX RDF
1	Mike P. Liang, Douglas L. Brutlag, Russ B. Altman	Automatic Construction of 3D Structural Motifs for Protein Function Prediction. (PDF / PS)	CSB	2003	DBLP DOI BibTeX RDF
1	Minghua Deng, Ting Chen, Fengzhu Sun	An integrated probabilistic model for functional prediction of proteins.	RECOMB	2003	DBLP DOI BibTeX RDF	function prediction, pfam domain, Markov random field, protein-protein interaction, Gibbs sampler
1	Ross D. King	A Personal View of How Best to Apply ILP.	ILP	2003	DBLP DOI BibTeX RDF