Search results for "systems biology"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
4	Michiel J. L. de Hoon, Dennis Vitkup	Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
3	Naren Sundaravaradan, K. S. M. Tozammel Hossain, Vandana Sreedharan, Douglas J. Slotta, John Paul C. Vergara, Lenwood S. Heath, Naren Ramakrishnan	Extracting temporal signatures for comprehending systems biology models.	KDD	2010	DBLP DOI BibTeX RDF	rank-order spaces, temporal signatures, feature selection, systems biology, biological networks
3	Sherief Reda	Using circuit structural analysis techniques for networks in systems biology.	SLIP	2009	DBLP DOI BibTeX RDF	networks, systems biology, rent's rule
3	Vijayalakshmi Chelliah, Lukas Endler, Nick S. Juty, Camille Laibe, Chen Li, Nicolas Rodriguez, Nicolas Le Novère	Data Integration and Semantic Enrichment of Systems Biology Models and Simulations.	DILS	2009	DBLP DOI BibTeX RDF	database annotation, computational systems biology, minimal requirement, data integration, semantic annotation, quantitative models
3	Francisco José Romero-Campero, Hongqing Cao, Miguel Cámara, Natalio Krasnogor	Structure and parameter estimation for cell systems biology models.	GECCO	2008	DBLP DOI BibTeX RDF	modular biology, genetic algorithms, memetic algorithm, systems biology, p systems, synthetic biology
3	Werner Sandmann, Verena Wolf	Computational Probability for Systems Biology.	FMSB	2008	DBLP DOI BibTeX RDF	Structured Model Representation, Markov Chains, Stochastic Modeling, Numerical Analysis, Biological Networks
3	Walter Fontana	Systems biology, models, and concurrency.	POPL	2008	DBLP DOI BibTeX RDF	kappa, models, systems biology
3	Dieter Oesterhelt	Systems Biology of Halophilic Archaea.	CMSB	2008	DBLP DOI BibTeX RDF
3	Federica Ciocchetta, Jane Hillston	Process Algebras in Systems Biology.	SFM	2008	DBLP DOI BibTeX RDF
3	Carolyn L. Talcott	Pathway Logic.	SFM	2008	DBLP DOI BibTeX RDF	Symbolic systems biology, Pathway Logic, Epidermal Growth Factor signaling, rewriting logic, signal transduction
3	Federica Ciocchetta, Corrado Priami, Paola Quaglia	An Automatic Translation of SBML into Beta-Binders.	IEEE/ACM Trans. Comput. Biology Bioinform.	2008	DBLP DOI BibTeX RDF	modeling, Process algebras, systems biology, biological systems, translation tool, Systems Biology Markup Language (SBML)
3	Mario J. Pérez-Jiménez, Francisco José Romero-Campero	P Systems, a New Computational Modelling Tool for Systems Biology.	T. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
3	François Fages, Sylvain Soliman	Type Inference in Systems Biology.	CMSB	2006	DBLP DOI BibTeX RDF
3	Davide Prandi	A Formal Approach to Molecular Docking.	CMSB	2006	DBLP DOI BibTeX RDF	Formal Methods, Systems Biology, Process Calculi, Molecular Docking, Drug Discovery
3	Mark R. Grant, C. Anthony Hunt	An In Silico Analogue of In Vitro Systems Used to Study Epithelial Cell Morphogenesis.	CMSB	2006	DBLP DOI BibTeX RDF	cystogenesis, epithelial, simulation, model, complex systems, systems biology, morphogenesis, Agent-based, synthetic
3	Jianlin Cheng, Lucas Scharenbroich, Pierre Baldi, Eric Mjolsness	Sigmoid: A Software Infrastructure for Pathway Bioinformatics and Systems Biology.	IEEE Intelligent Systems	2005	DBLP DOI BibTeX RDF	intelligent middleware, generative software, Sigmoid, Cellerator, UML, bioinformatics, systems biology, computer algebra, pathway, cell modeling
3	Magali Roux-Rouquié, Michel Soto	Virtualization in Systems Biology: Metamodels and Modeling Languages for Semantic Data Integration.	T. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
3	Nicola Cannata, Flavio Corradini, Emanuela Merelli, Andrea Omicini, Alessandro Ricci	An Agent-Oriented Conceptual Framework for Systems Biology.	T. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
3	Barak Shenhav, Ariel Solomon, Doron Lancet, Ran Kafri	Early Systems Biology and Prebiotic Networks.	T. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
3	Adelinde Uhrmacher, Daniela Degenring, Bernard P. Zeigler	Discrete Event Multi-level Models for Systems Biology.	T. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
3	Luca Cardelli	Abstract Machines of Systems Biology.	T. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
3	Jian He, Masha Sosonkina, Clifford A. Shaffer, John J. Tyson, Layne T. Watson, Jason W. Zwolak	A Hierarchical Parallel Scheme for Global Parameter Estimation in Systems Biology.	IPDPS	2004	DBLP DOI BibTeX RDF	DIRECT (DIviding RECTangles) algorithm, GPSHMEM (generalized portable shared memory), parallel and distributed data structures, global optimization, parameter estimation, systems biology, load balancing strategy, multidisciplinary design optimization
3	Florencio Pazos, David Guijas, Manuel J. Gomez, Almudena Trigo, Victor de Lorenzo, Alfonso Valencia	The Biodegradation Network, a New Scenario for Computational Systems Biology Research.	CMSB	2004	DBLP DOI BibTeX RDF
3	Manuel Corpas	Integrating Simulation Packages via Systems Biology Mark-Up Language.	CMSB	2003	DBLP DOI BibTeX RDF
3	Olaf Langmack	How to Solve Semantic Puzzles of Systems Biology.	CMSB	2003	DBLP DOI BibTeX RDF
3	Pierpaolo Degano, Corrado Priami	Enhanced Operational Semantics in Systems Biology.	CMSB	2003	DBLP DOI BibTeX RDF
3	Magali Roux-Rouquié, Leroy E. Hood, Sandrine Imbeaud, Charles Auffray	Issues in Computational Methods for Functional Genomics and Systems Biology.	CMSB	2003	DBLP DOI BibTeX RDF
2	Sebastian Henkel, Thomas Nägele, Imke Hörmiller, Thomas Sauter, Oliver Sawodny, Michael Ederer, Arnd G. Heyer	A systems biology approach to analyse leaf carbohydrate metabolism in Arabidopsis thaliana.	EURASIP J. Bioinformatics and Systems Biology	2011	DBLP DOI BibTeX RDF
2	Kaushal Desai, David Brott, Xiaohua Hu, Anastasia Christianson	A Systems Biology Approach for Detecting Toxicity-Related Hotspots inside Protein Interaction Networks.	HISB	2011	DBLP DOI BibTeX RDF
2	Mary M. Randolph-Gips	Autism: A Systems Biology Disease.	HISB	2011	DBLP DOI BibTeX RDF
2	Ian Gorton, Yan Liu, Jian Yin, Anand Kulkarni, Adam Wynne	Towards Composing Data Aware Systems Biology Workflows on Cloud Platforms: A MeDICi-Based Approach.	SERVICES	2011	DBLP DOI BibTeX RDF	cloud computing, Scientific workflow, systems biology
2	Sandra Andorf, Tanja Gärtner, Matthias Steinfath, Hanna Witucka-Wall, Thomas Altmann, Dirk Repsilber	Towards Systems Biology of Heterosis: A Hypothesis about Molecular Network Structure Applied for the Arabidopsis Metabolome.	EURASIP J. Bioinformatics and Systems Biology	2009	DBLP DOI BibTeX RDF
2		Machine Learning in Systems Biology.	Encyclopedia of Database Systems	2009	DBLP DOI BibTeX RDF
2		Data Mining in Systems Biology.	Encyclopedia of Database Systems	2009	DBLP DOI BibTeX RDF
2	Henry Mirsky, Jörg Stelling, Rudiyanto Gunawan, Neda Bagheri, Stephanie R. Taylor, Eric Kwei, Jason E. Shoemaker, Francis J. Doyle III	Automatic Control in Systems Biology.	Handbook of Automation	2009	DBLP DOI BibTeX RDF
2	Ting Gong, Jianhua Jason Xuan, Rebecca B. Riggins, Robert Clarke	A Systems Biology Approach to Identify Affected Regulatory and Signaling Circuits in Protein Interaction Networks.	IJCBS	2009	DBLP DOI BibTeX RDF
2	Dan Xi, Jeffrey D. White	Exploring Systems Biology Approaches to Traditional Chinese Medicine Cancer Research.	IJCBS	2009	DBLP DOI BibTeX RDF
2	Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, Elzbieta Krepska	What Can Formal Methods Bring to Systems Biology?	FM	2009	DBLP DOI BibTeX RDF
2	Alexander Bockmayr	Logic-Based Modeling in Systems Biology.	LPNMR	2009	DBLP DOI BibTeX RDF
2	Alexandre Donzé, Gilles Clermont, Axel Legay, Christopher James Langmead	Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology.	RECOMB	2009	DBLP DOI BibTeX RDF	Acute Illness, Verification, Uncertainty, Systems Biology, Nonlinear Dynamical Systems
2	Hayssam Soueidan, Grégoire Sutre, Macha Nikolski	Qualitative Transition Systems for the Abstraction and Comparison of Transient Behavior in Parametrized Dynamic Models.	CMSB	2009	DBLP DOI BibTeX RDF
2	Elisabetta De Maria, François Fages, Sylvain Soliman	On Coupling Models Using Model-Checking: Effects of Irinotecan Injections on the Mammalian Cell Cycle.	CMSB	2009	DBLP DOI BibTeX RDF
2	John K. Heath	The Equivalence between Biology and Computation.	CMSB	2009	DBLP DOI BibTeX RDF
2	Sumit Kumar Jha, Edmund M. Clarke, Christopher James Langmead, Axel Legay, André Platzer, Paolo Zuliani	A Bayesian Approach to Model Checking Biological Systems.	CMSB	2009	DBLP DOI BibTeX RDF
2	Roshan D'Souza, Mikola Lysenko, Simeone Marino, Denise E. Kirschner	Data-parallel algorithms for agent-based model simulation of tuberculosis on graphics processing units.	SpringSim	2009	DBLP DOI BibTeX RDF	integrative systems biology, GPGPU, agent-based models
2	Phuong Dao, Alexander Schönhuth, Fereydoun Hormozdiari, Iman Hajirasouliha, Süleyman Cenk Sahinalp, Martin Ester	Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks.	WABI	2009	DBLP DOI BibTeX RDF	Biomolecular Network Motifs, Evolutionary Systems Biology, Color Coding, Protein-Protein Interaction Networks
2	Gary B. Fogel, Eric Bullinger, S. F. Su, Francisco Azuaje	Special Section on Machine Intelligence Approaches to Systems Biology.	IEEE Transactions on Systems, Man, and Cybernetics, Part B	2008	DBLP DOI BibTeX RDF
2	Joseph L. McClay, Edwin J. C. G. van den Oord	A Theoretical Systems Biology Analysis Suggests Gene-Environment Interaction Effects are Common at the Most Basic Levels of Biological Organization.	BMEI	2008	DBLP DOI BibTeX RDF	interaction, systems, environment, gene, kinetics
2	Carla Piazza, Alberto Policriti	Systems Biology: Models and Logics.	ICLP	2008	DBLP DOI BibTeX RDF
2	Harini N. Kasamsetty, Xiaogang Wu, Jake Yue Chen	Towards an integrative human pathway database for systems biology applications.	SAC	2008	DBLP DOI BibTeX RDF	bio-molecular pathway, signaling pathways, data integration
2	Aurélien Rizk, Grégory Batt, François Fages, Sylvain Soliman	On a Continuous Degree of Satisfaction of Temporal Logic Formulae with Applications to Systems Biology.	CMSB	2008	DBLP DOI BibTeX RDF
2	Daniel T. Gillespie	Simulation Methods in Systems Biology.	SFM	2008	DBLP DOI BibTeX RDF	stochastic chemical kinetics, stochastic simulation algorithm, tau-leaping, Langevin equation, Fokker-Planck equation, stiff systems, slow-scale stochastic simulation algorithm, Michaelis-Menten, enzyme-substrate reaction, multiscale, master equation
2	François Fages, Sylvain Soliman	Model Revision from Temporal Logic Properties in Computational Systems Biology.	Probabilistic Inductive Logic Programming	2008	DBLP DOI BibTeX RDF
2	Florian Reisinger, Manuel Corpas, John Hancock, Henning Hermjakob, Ewan Birney, Pascal Kahlem	ENFIN - An Integrative Structure for Systems Biology.	DILS	2008	DBLP DOI BibTeX RDF	ENFIN, Integration, Systems Biology
2	Alfonso Valencia	Text mining in genomics and systems biology.	DTMBIO	2008	DBLP DOI BibTeX RDF	text mining
2	François Fages, Sylvain Soliman	From Reaction Models to Influence Graphs and Back: A Theorem.	FMSB	2008	DBLP DOI BibTeX RDF
2	Mathias John, Cédric Lhoussaine, Joachim Niehren, Adelinde M. Uhrmacher	The Attributed Pi Calculus.	CMSB	2008	DBLP DOI BibTeX RDF
2	Markus Durzinsky, Annegret Wagler, Robert Weismantel	A Combinatorial Approach to Reconstruct Petri Nets from Experimental Data.	CMSB	2008	DBLP DOI BibTeX RDF
2	Dagmar Köhn, Nicolas Le Novère	SED-ML - An XML Format for the Implementation of the MIASE Guidelines.	CMSB	2008	DBLP DOI BibTeX RDF
2	Dirk Lebiedz, Dominik Skanda, Marc Fein	Automatic Complexity Analysis and Model Reduction of Nonlinear Biochemical Systems.	CMSB	2008	DBLP DOI BibTeX RDF
2	Laurence Loewe, Jane Hillston	The Distribution of Mutational Effects on Fitness in a Simple Circadian Clock.	CMSB	2008	DBLP DOI BibTeX RDF
2	François Fages, Sylvain Soliman	Formal Cell Biology in Biocham.	SFM	2008	DBLP DOI BibTeX RDF
2	Luca Bortolussi, Alberto Policriti	Hybrid Systems and Biology.	SFM	2008	DBLP DOI BibTeX RDF
2	Yong Ju Cho, Naren Ramakrishnan, Yang Cao	Reconstructing chemical reaction networks: data mining meets system identification.	KDD	2008	DBLP DOI BibTeX RDF	network reconstruction, graphical models, systems biology, ordinary differential equations, markov networks
2	Sebastian Fröhler, Stefan Kramer	Inductive logic programming for gene regulation prediction.	Machine Learning	2008	DBLP DOI BibTeX RDF	Gene expression, Inductive logic programming, Systems biology, Relational learning, Gene regulation
2	Richard J. Boys, Darren J. Wilkinson, Thomas B. L. Kirkwood	Bayesian inference for a discretely observed stochastic kinetic model.	Statistics and Computing	2008	DBLP DOI BibTeX RDF	Biochemical networks, Block updating, Lotka-Volterra model, Markov jump process, MCMC methods, Parameter estimation, Systems biology, Reversible jump
2	Peter Saffrey, Ofer Margoninski, James Hetherington, Marta Varela-Rey, Sachie Yamaji, Anthony Finkelstein, Ian David Lockhart Bogle, Anne Warner	End-to-End Information Management for Systems Biology.	T. Comp. Sys. Biology	2007	DBLP DOI BibTeX RDF
2	William W. Edmonson, Senanu Ocloo, Cranos Williams, Winser E. Alexander	The Use of Interval Methods in Signal Processing and Control for Systems Biology.	FOCI	2007	DBLP DOI BibTeX RDF
2	Meng-Hsiun Tsai, Jun-Dong Chang, Sheng-Hsiung Chiu, Ching-Hao Lai	Identification of Marker Genes Discriminating the Pathological Stages in Ovarian Carcinoma by Using Support Vector Machine and Systems Biology.	ACAL	2007	DBLP DOI BibTeX RDF	support vector machine (SVM), Microarray, gene expression, systems biology, ANOVA, ovarian cancer
2	Thorsten Lenser, Thomas Hinze, Bashar Ibrahim, Peter Dittrich	Towards Evolutionary Network Reconstruction Tools for Systems Biology.	EvoBIO	2007	DBLP DOI BibTeX RDF
2	Dominique Chu	Evolving genetic regulatory networks for systems biology.	IEEE Congress on Evolutionary Computation	2007	DBLP DOI BibTeX RDF
2	Zhouyang Sun, Anthony Finkelstein, Jonathan Ashmore	Using Ontology with Semantic Web Services to Support Modeling in Systems Biology.	WISE Workshops	2007	DBLP DOI BibTeX RDF	Ontology, OWL, Semantic Web Services, OWL-S, Java EE
2	Melissa Freedenberg, Chanchala Kaddi, Chang F. Quo, May D. Wang	Review of Systems Biology Simulation Tools for Translational Research.	BIBE	2007	DBLP DOI BibTeX RDF
2	Trey Ideker, Vineet Bafna (eds.)	Systems Biology and Computational Proteomics, Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics, San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers	Systems Biology and Computational Proteomics	2007	DBLP BibTeX RDF
2	Bud Mishra	Algebraic Systems Biology: Theses and Hypotheses.	AB	2007	DBLP DOI BibTeX RDF
2	Liliana Félix, Francesc Rosselló, Gabriel Valiente	Reconstructing Metabolic Pathways by Bidirectional Chemical Search.	CMSB	2007	DBLP DOI BibTeX RDF	biochemical reaction, metabolic pathway, Artificial chemistry
2	Werner Sandmann	Simultaneous Stochastic Simulation of Multiple Perturbations in Biological Network Models.	CMSB	2007	DBLP DOI BibTeX RDF	Parameter Perturbations, Importance Sampling, Stochastic Simulation, Biological Networks, Likelihood Ratios
2	Ranjit Randhawa, Clifford A. Shaffer, John J. Tyson	Fusing and composing macromolecular regulatory network models.	SpringSim	2007	DBLP DOI BibTeX RDF	pathway models, computational biology, systems biology markup language (SBML)
2	Jane Hillston	Quantitative analysis of biochemical signalling pathways.	VALUETOOLS	2007	DBLP DOI BibTeX RDF	biochemical signalling pathways, systems biology, stochastic process algebra
2	Zelmina Lubovac, David Corne, Jonas Gamalielsson, Björn Olsson	Weighted Cohesiveness for Identification of Functional Modules and Their Interconnectivity.	BIRD	2007	DBLP DOI BibTeX RDF	SWEMODE, interconnectivity, systems biology, Gene Ontology, functional modules
2	Binhua Tang, Li He, Sushing Chen, Bairong Shen	System Stability Via Stepping Optimal Control: Theory and Applications.	EPIA Workshops	2007	DBLP DOI BibTeX RDF	Stepping optimal control algorithm, Vanecek-Celikovsky classification criteria, Systems biology, System stability
2	Daniel Marbach, Claudio Mattiussi, Dario Floreano	Bio-mimetic Evolutionary Reverse Engineering of Genetic Regulatory Networks.	EvoBIO	2007	DBLP DOI BibTeX RDF	Steady-State Data, Analog Genetic Encoding (AGE), Genetic Algorithm, Reverse Engineering, Systems Biology, Gene Networks
2	Yun Wang, Rao Zheng, Yan-Jiang Qiao	Modeling, Learning and Simulating Biological Cells with Entity Grammar.	International Conference on Computational Science	2007	DBLP DOI BibTeX RDF	entity grammar system, complex system, systems biology
2	Marenglen Biba, Stefano Ferilli, Nicola Di Mauro, Teresa Maria Altomare Basile	A Hybrid Symbolic-Statistical Approach to Modeling Metabolic Networks.	KES	2007	DBLP DOI BibTeX RDF	symbolic-statistical frameworks, machine learning, Systems biology, statistical relational learning, metabolic networks
2	Ofer Margoninski, Peter Saffrey, James Hetherington, Anthony Finkelstein, Anne Warner	A Specification Language and a Framework for the Execution of Composite Models in Systems Biology.	T. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
2	Ivan Arisi, Paola Roncaglia, Vittorio Rosato, Antonino Cattaneo	SYMBIONIC: A European Initiative on the Systems Biology of the Neuronal Cell.	T. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
2	François Fages	From Syntax to Semantics in Systems Biology Towards Automated Reasoning Tools.	T. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
2	Lena Strömbäck	A method for comparison of standardized information within systems biology.	Winter Simulation Conference	2006	DBLP DOI BibTeX RDF
2	Herbert M. Sauro, David Harel, Marta Z. Kwiatkowska, Clifford A. Shaffer, Adelinde M. Uhrmacher, Michael Hucka, Pedro Mendes, Lena Strömbäck, John J. Tyson	Challenges for modeling and simulation methods in systems biology.	Winter Simulation Conference	2006	DBLP DOI BibTeX RDF
2	Herbert M. Sauro	Innovation in software for systems biology: is there any?	Winter Simulation Conference	2006	DBLP DOI BibTeX RDF
2	Irina Surovtsova, Sven Sahle, Jürgen Pahle, Ursula Kummer	Approaches to complexity reduction in a systems biology research environment (SYCAMORE).	Winter Simulation Conference	2006	DBLP DOI BibTeX RDF
2	Frank T. Bergmann, Herbert M. Sauro	SBW - a modular framework for systems biology.	Winter Simulation Conference	2006	DBLP DOI BibTeX RDF
2	Eleazar Eskin, Trey Ideker, Benjamin J. Raphael, Christopher T. Workman (eds.)	Systems Biology and Regulatory Genomics, Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers	Systems Biology and Regulatory Genomics	2006	DBLP BibTeX RDF
2	Yutao Ma, Yonghong Peng	Co-expression Gene Discovery from Microarray for Integrative Systems Biology.	ADMA	2006	DBLP DOI BibTeX RDF
2	Adelinde M. Uhrmacher	Multi-Level Modeling and Simulation in Systems Biology -- Promises and Challenges.	DS-RT	2006	DBLP DOI BibTeX RDF
2	Gaudenz Danuser	Computer vision for systems biology.	ISBI	2006	DBLP DOI BibTeX RDF
2	Céline Kuttler, Joachim Niehren	Gene Regulation in the Pi Calculus: Simulating Cooperativity at the Lambda Switch.	T. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
2	Claudio Eccher, Paola Lecca	Translating SBML Models into the Stochastic pi-Calculus for Stochastic Simulation.	T. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
2	Laurence Calzone, Nathalie Chabrier-Rivier, François Fages, Sylvain Soliman	Machine Learning Biochemical Networks from Temporal Logic Properties.	T. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
2	Céline Lefebvre, Wei Keat Lim, Katia Basso, Riccardo Dalla Favera, Andrea Califano	A Context-Specific Network of Protein-DNA and Protein-Protein Interactions Reveals New Regulatory Motifs in Human B Cells.	Systems Biology and Computational Proteomics	2006	DBLP DOI BibTeX RDF	combinatorial regulation, evidence integration, human B cells, naïve Bayes, network motifs