Search results for "transcriptome"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
3	Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido	Outlining a Strategy for Screening Non-coding RNAs on a Transcriptome Through Support Vector Machines.	BSB	2007	DBLP DOI BibTeX RDF	ncRNA, Paracoccidioides brasiliensis, machine learning, Support Vector Machines, non-coding RNA, transcriptome
2	Zeynep H. Gümüs, Fernando Siso-Nadal, Ada Gjrezi, Paul McDonagh, Iya Khalil, Paraskevi Giannakakou, Harel Weinstein	Quantification and Analysis of Combination Drug Synergy in High-Throughput Transcriptome Studies.	BIBE	2010	DBLP DOI BibTeX RDF	combination index, drug synergy, reverse engineering, ovarian cancer, transcriptome
2	Vincent Lacroix, Michael Sammeth, Roderic Guigó, Anne Bergeron	Exact Transcriptome Reconstruction from Short Sequence Reads.	WABI	2008	DBLP DOI BibTeX RDF
2	Judith Zimmermann, Zsuzsanna Lipták, Scott Hazelhurst	A Method for Evaluating the Quality of String Dissimilarity Measures and Clustering Algorithms for EST Clustering.	BIBE	2004	DBLP DOI BibTeX RDF	string similarity and dissimilarity measures, EST clustering, benchmarks, simulated data, transcriptome
2	Doron Lipson, Peter Webb, Zohar Yakhini	Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae Transcriptome.	WABI	2002	DBLP DOI BibTeX RDF
1	Maxime Garcia, Raphaelle Millat-Carus, François Bertucci, Pascal Finetti, Daniel Birnbaum, Ghislain Bidaut	Interactome-transcriptome integration for predicting distant metastasis in breast cancer.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Isaac S. Kohane, Vladimir I. Valtchinov	Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Björn Schwalb, Daniel Schulz, Mai Sun, Benedikt Zacher, Sebastian Dümcke, Dietmar E. Martin, Patrick Cramer, Achim Tresch	Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA).	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Isaac S. Kohane, Vladimir I. Valtchinov	Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	E. E. R. Philipp, L. Kraemer, D. Mountfort, M. Schilhabel, S. Schreiber, Philip Rosenstiel	The Transcriptome Analysis and Comparison Explorer - T-ACE: a platform-independent, graphical tool to process large RNAseq datasets of non-model organisms.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Junhee Seok, Weihong Xu, Hong Gao, Ronald W. Davis, Wenzhong Xiao	JETTA: junction and exon toolkits for transcriptome analysis.	Bioinformatics	2012	DBLP DOI BibTeX RDF
1	Wei Li, Tao Jiang	Workshop: Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads.	ICCABS	2012	DBLP DOI BibTeX RDF
1	Yi Zheng, Liangjun Zhao, Junping Gao, Zhangjun Fei	iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Yao Fu, Laura R. Jarboe, Julie A. Dickerson	Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Xutao Deng	SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data.	BMC Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Xiaozeng Yang, Lei Li	miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Lorena Pantano, Xavier Estivill, Eulalia Martí	A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Vijay Garla, Yong Kong, Sebastian Szpakowski, Michael Krauthammer	MU2A - reconciling the genome and transcriptome to determine the effects of base substitutions.	Bioinformatics	2011	DBLP DOI BibTeX RDF
1	Leo Lahti	Probabilistic analysis of the human transcriptome with side information	CoRR	2011	DBLP BibTeX RDF
1	Soohyun Lee, Chae Hwa Seo, Byungho Lim, Jin Ok Yang, Jeongsu Oh, Minjin Kim, Sooncheol Lee, Byungwook Lee, Changwon Kang, Sanghyuk Lee	Accurate quantification of transcriptome from RNA-Seq data by effective length normalization.	Nucleic Acids Research	2011	DBLP DOI BibTeX RDF
1	Christopher Plaisier, J. Christopher Bare, Nitin S. Baliga	miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling.	Nucleic Acids Research	2011	DBLP DOI BibTeX RDF
1	Clyde F. Phelix, Richard G. LeBaron, Dawnlee J. Roberson, Rosa E. Villanueva, Greg Villareal, Omid B. Rahimi, Sandra Siedlak, Xiongwei Zhu, George Perry	Transcriptome-To-Metabolome™ Biosimulation Reveals Human Hippocampal Hypometabolism with Age and Alzheimer's Disease.	IJKDB	2011	DBLP DOI BibTeX RDF
1	Vitoantonio Bevilacqua, Fabio Stroppa, Stefano Saladino, Ernesto Picardi	A Novel Approach to Clustering and Assembly of Large-Scale Roche 454 Transcriptome Data for Gene Validation and Alternative Splicing Analysis.	ICIC	2011	DBLP DOI BibTeX RDF
1	Zhiyu Zhao, Tin Chi Nguyen, Nan Deng, Kristen Marie Johnson, Dongxiao Zhu	SPATA: A seeding and patching algorithm for de novo transcriptome assembly.	BIBM Workshops	2011	DBLP DOI BibTeX RDF
1	Tin Chi Nguyen, Zhiyu Zhao, Dongxiao Zhu	SPATA: A highly accurate GUI tool for de novo transcriptome assembly.	BIBM Workshops	2011	DBLP DOI BibTeX RDF
1	Ruben Cruz Huacarpuma, Maristela Holanda, Maria Emilia M. T. Walter	A conceptual data model for transcriptome project pipeline.	BIBM Workshops	2011	DBLP DOI BibTeX RDF
1	Ruben Cruz Huacarpuma, Maristela Holanda, Maria Emilia Telles Walter	A Conceptual Model for Transcriptome High-Throughput Sequencing Pipeline.	BSB	2011	DBLP DOI BibTeX RDF
1	Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin	T-IDBA: A de novo Iterative de Bruijn Graph Assembler for Transcriptome - (Extended Abstract).	RECOMB	2011	DBLP DOI BibTeX RDF
1	Wei Li, Jianxing Feng, Tao Jiang	IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly - (Extended Abstract).	RECOMB	2011	DBLP DOI BibTeX RDF
1	Jorge Duitama, Pramod K. Srivastava, Ion I. Mandoiu	Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data.	ICCABS	2011	DBLP DOI BibTeX RDF
1	Wei Li, Jianxing Feng, Tao Jiang	Workshop: Transcriptome assembly from RNA-Seq data: Objectives, algorithms and challenges.	ICCABS	2011	DBLP DOI BibTeX RDF
1	Hedda Høvik, Tsute Chen	Dynamic probe selection for studying microbial transcriptome with high-density genomic tiling microarrays.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Jeffrey Martin, Wenhan Zhu, Karla D. Passalacqua, Nicholas H. Bergman, Mark Borodovsky	Bacillus anthracis genome organization in light of whole transcriptome sequencing.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Esteban Czwan, Benedikt Brors, David Kipling	Modelling p-value distributions to improve theme-driven survival analysis of cancer transcriptome datasets.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Vinod Chandra, Reshmi Girijadevi, Achuthsankar S. Nair, Sreenadhan S. Pillai, Radhakrishna M. Pillai	MTar: a computational microRNA target prediction architecture for human transcriptome.	BMC Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Salih Tuna, Mahesan Niranjan	Reducing the algorithmic variability in transcriptome-based inference.	Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Salih Tuna, Mahesan Niranjan	Inference from Low Precision Transcriptome Data Representation.	Signal Processing Systems	2010	DBLP DOI BibTeX RDF
1	Claudia Angelini, Alfredo Ciccodicola, Valerio Costa, Italia De Feis	Analyzing the Whole Transcriptome by RNA-Seq Data: The Tip of the Iceberg.	ERCIM News	2010	DBLP BibTeX RDF
1	Jun Wang, Jianguo Zhang, Ruiqiang Li, Hongkun Zheng, Jun Li, Yong Zhang, Heng Li, Peixiang Ni, Songgang Li, Shengting Li, Jingqiang Wang, Dongyuan Liu, Jason E. McDermott, Ram Samudrala, Siqi Liu, Jian Wang, Huanming Yang, Jun Yu, Gane Ka-Shu Wong	Evolutionary Transients in the Rice Transcriptome.	Genomics, Proteomics & Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Guillaume Brysbaert, François-Xavier Pellay, Sebastian Noth, Arndt Benecke	Quality Assessment of Transcriptome Data Using Intrinsic Statistical Properties.	Genomics, Proteomics & Bioinformatics	2010	DBLP DOI BibTeX RDF
1	Jun-ichi Takeda, Yutaka Suzuki, Ryuichi Sakate, Yoshiharu Sato, Takashi Gojobori, Tadashi Imanishi, Sumio Sugano	H-DBAS: human-transcriptome database for alternative splicing: update 2010.	Nucleic Acids Research	2010	DBLP DOI BibTeX RDF
1	David Langenberger, Clara Bermudez-Santana, Peter F. Stadler, Steve Hoffmann	Identification and Classification of Small RNAs in Transcriptome Sequence Data.	Pacific Symposium on Biocomputing	2010	DBLP BibTeX RDF
1	Gabriela Souto Vieira-de-Mello, Petra Barros dos Santos, Nina da Mota Soares-Cavalcanti, Ana Maria Benko-Iseppon	Identification and Expression of Early Nodulin in Sugarcane Transcriptome Revealed by in Silico Analysis.	CIBB	2010	DBLP DOI BibTeX RDF
1	Petra Barros dos Santos, Nina da Mota Soares-Cavalcanti, Gabriela S. Vieira-de-Melo, Ana Maria Benko-Iseppon	Osmoprotectants in the Sugarcane (Saccharum spp.) Transcriptome Revealed by in Silico Evaluation.	CIBB	2010	DBLP DOI BibTeX RDF
1	Antony T. Athippozhy, Liping Huang, Tianyong Zhao, Clavia Ruth Wooton-Kee, Paiboon Jungsuwadee, Arnold J. Stromberg, Mary Vore	Utilizing a mixed model approach to compare the lactating rat transcriptome against age-matched control virgins.	BMC Bioinformatics	2009	DBLP BibTeX RDF
1	Ernesto Picardi, Flavio Mignone, Graziano Pesole	EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Atsushi Niida, Andrew D. Smith, Seiya Imoto, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama	Gene set-based module discovery in the breast cancer transcriptome.	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Xin Zhou, Zhen Su, R. Douglas Sammons, Yanhui Peng, Patrick J. Tranel, C. Neal Stewart Jr., Joshua S. Yuan	Novel software package for cross-platform transcriptome analysis (CPTRA).	BMC Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Evert-Jan Blom, Jos B. T. M. Roerdink, Oscar P. Kuipers, Sacha A. F. T. van Hijum	MOTIFATOR: detection and characterization of regulatory motifs using prokaryote transcriptome data.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Inanç Birol, Shaun D. Jackman, Cydney B. Nielsen, Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Douglas E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones	De novo transcriptome assembly with ABySS.	Bioinformatics	2009	DBLP DOI BibTeX RDF
1	Daniel Ramsköld, Eric T. Wang, Christopher B. Burge, Rickard Sandberg	An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data.	PLoS Computational Biology	2009	DBLP DOI BibTeX RDF
1	Clémentine Dressaire, Christophe Gitton, Pascal Loubière, Véronique Monnet, Isabelle Queinnec, Muriel Cocaign-Bousquet	Transcriptome and Proteome Exploration to Model Translation Efficiency and Protein Stability in Lactococcus lactis.	PLoS Computational Biology	2009	DBLP DOI BibTeX RDF
1	C. Q. Chang, Y. S. Hung, Mahesan Niranjan	Modelling uncertainty in transcriptome measurements enhances network component analysis of yeast metabolic cycle.	ICASSP	2009	DBLP DOI BibTeX RDF
1	Yoshinori Tamada, Hiromitsu Araki, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Yuki Tomiyasu, Kaori Yasuda, Ben Dunmore, Deborah Sanders, Sally Humphreys, Cristin G. Print, Stephen D. Charnock-Jones, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano	Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks.	Pacific Symposium on Biocomputing	2009	DBLP BibTeX RDF
1	Ana Carolina Wanderley-Nogueira, Nina da Mota Soares-Cavalcanti, Luis Carlos Belarmino, Adriano Barbosa-Silva, Ederson Akio Kido, Semiramis Jamil Hadad do Monte, Valesca Pandolfi, Tercílio Calsa-Junior, Ana Maria Benko-Iseppon	In Silico Screening for Pathogenesis Related-2 Gene Candidates in VignaUnguiculata Transcriptome.	CIBB	2009	DBLP DOI BibTeX RDF
1	Salih Tuna, Mahesan Niranjan	Cross-Platform Analysis with Binarized Gene Expression Data.	PRIB	2009	DBLP DOI BibTeX RDF	Cross-platform analysis, binary gene expression, classification
1	Tulio C. Silva, Pedro A. Berger, Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido, Maria Emilia M. T. Walter	SOM-PORTRAIT: Identifying Non-coding RNAs Using Self-Organizing Maps.	BSB	2009	DBLP DOI BibTeX RDF
1	Doulaye Dembélé	Microarray Data Analysis Using Fuzzy Clustering Algorithms.	Fuzzy Systems in Bioinformatics and Computational Biology	2009	DBLP DOI BibTeX RDF
1	Barbara Lazzari, Andrea Caprera, Alberto Vecchietti, Ivan Merelli, Francesca Barale, Luciano Milanesi, Alessandra Stella, Carlo Pozzi	Version VI of the ESTree db: an improved tool for peach transcriptome analysis.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Andrey A. Ptitsyn	Comprehensive analysis of circadian periodic pattern in plant transcriptome.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Dorothy N. Kakoola, Nataliya Lenchik, Anita Curcio-Brint, Ivan Gerling	Analysis of the transcriptome of CD4 T-Lymphocytes from young Non-Obese Diabetic (NOD) mice suggests a key role for cytokines and apoptosis.	BMC Bioinformatics	2008	DBLP BibTeX RDF
1	Evert-Jan Blom, Sacha A. F. T. van Hijum, Klaas J. Hofstede, Remko Silvis, Jos B. T. M. Roerdink, Oscar P. Kuipers	DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites.	BMC Bioinformatics	2008	DBLP DOI BibTeX RDF
1	Akira Sato, Yukiko Sekine, Chihiro Saruta, Hirozumi Nishibe, Noriyuki Morita, Yumi Sato, Tetsushi Sadakata, Yo Shinoda, Toshio Kojima, Teiichi Furuichi	Cerebellar development transcriptome database (CDT-DB): Profiling of spatio-temporal gene expression during the postnatal development of mouse cerebellum.	Neural Networks	2008	DBLP DOI BibTeX RDF
1	Asaf Levy, Noa Sela, Gil Ast	TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates.	Nucleic Acids Research	2008	DBLP DOI BibTeX RDF
1	Séverine Gagnot, Jean-Philippe Tamby, Marie-Laure Martin-Magniette, Frédérique Bitton, Ludivine Taconnat, Sandrine Balzergue, Sébastien Aubourg, Jean-Pierre Renou, Alain Lecharny, Véronique Brunaud	CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform.	Nucleic Acids Research	2008	DBLP DOI BibTeX RDF
1	Petra dos Santos Barros, Nina da Mota Soares-Cavalcanti, Gabriela S. Vieira-Mello, Ana Carolina Wanderley-Nogueira, Tercílio Calsa-Junior, Ana Maria Benko-Iseppon	In Silico Evaluation of Osmoprotectants in Eucalyptus Transcriptome.	CIBB	2008	DBLP DOI BibTeX RDF	Salinity and Drought Stress, Osmolytes, Crop Evolution, Data Mining
1	Frederic B. Bastian, Gilles Parmentier, Julien Roux, Sébastien Moretti, Vincent Laudet, Marc Robinson-Rechavi	Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species.	DILS	2008	DBLP DOI BibTeX RDF	gene expression pattern, ontology, data integration, homology
1	Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou	An Integrative Network Approach to Map the Transcriptome to the Phenome.	RECOMB	2008	DBLP DOI BibTeX RDF
1	Derek Greene, Kenneth Bryan, Padraig Cunningham	Parallel integration of heterogeneous genome-wide data sources.	BIBE	2008	DBLP DOI BibTeX RDF
1	Juan M. Corchado, Juan Francisco de Paz	Using CBR Systems for Leukemia Classification.	HAIS	2008	DBLP DOI BibTeX RDF	dendogram, leukemia classification, data mining, Case-based Reasoning
1	Miki Hirabayashi, Hirotada Ohashi, Tai Kubo	Experimental analysis of the basic idea on the transcription-based diagnostic automata controlled by programmed molecules.	Natural Computing	2008	DBLP DOI BibTeX RDF	Nucleic acid detection systems, Molecular programming, Autonomous diagnostic devices, Molecular circuits, DNA computing, Biomolecular computing
1	Sujimarn Suwannaroj, Mahesan Niranjan	Enhancing Automatic Construction of Gene Subnetworks by Integrating Multiple Sources of Information.	Signal Processing Systems	2008	DBLP DOI BibTeX RDF	bioinformatics, microarray analysis, literature mining
1	Daniela Albrecht, Olaf Kniemeyer, Axel A. Brakhage, Matthias Berth, Reinhard Guthke	Integration of Transcriptome and Proteome Data from Human-Pathogenic Fungi by Using a Data Warehouse.	J. Integrative Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Ryoko Morioka, Shigehiko Kanaya, Masami Y. Hirai, Mitsuru Yano, Naotake Ogasawara, Kazuki Saito	Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model.	BMC Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Evert-Jan Blom, Dinne W. J. Bosman, Sacha A. F. T. van Hijum, Rainer Breitling, Lars Tijsma, Remko Silvis, Jos B. T. M. Roerdink, Oscar P. Kuipers	FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes.	Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Atsushi Hijikata, Hiroshi Kitamura, Yayoi Kimura, Ryo Yokoyama, Yuichi Aiba, Yanyuan Bao, Shigeharu Fujita, Koji Hase, Shohei Hori, Yasuyuki Ishii, Osami Kanagawa, Hiroshi Kawamoto, Kazuya Kawano, Haruhiko Koseki, Masato Kubo, Ai Kurita-Miki, Tomohiro Kurosaki, Kyoko Masuda, Mitsumasa Nakata, Keisuke Oboki, Hiroshi Ohno, Mariko Okamoto, Yoshimichi Okayama, Jiyang O-Wang, Hirohisa Saito, Takashi Saito, Machie Sakuma, Katsuaki Sato, Kaori Sato, Ken-ichiro Seino, Ruka Setoguchi, Yuki Tamura, Masato Tanaka, Masaru Taniguchi, Ichiro Taniuchi, Annabelle Teng, Takeshi Watanabe, Hiroshi Watarai, Sho Yamasaki, Osamu Ohara	Construction of an open-access database that integrates cross-reference information from the transcriptome and proteome of immune cells.	Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Guillaume Brysbaert, Sebastian Noth, Arndt Benecke	Generation of Synthetic Transcriptome Data with Defined Statistical Properties for the Development and Testing of New Analysis Methods.	Genomics, Proteomics & Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Frankie B. Stentz, Abbas E. Kitabchi	Transcriptome and Proteome Expressions Involved in Insulin Resistance in Muscle and Activated T-Lymphocytes of Patients with Type 2 Diabetes.	Genomics, Proteomics & Bioinformatics	2007	DBLP DOI BibTeX RDF
1	Alecksandr Kutchma, Nayeem Quayum, Jan Jensen	GeneSpeed: protein domain organization of the transcriptome.	Nucleic Acids Research	2007	DBLP DOI BibTeX RDF
1	Lothar Willmitzer, Camila Caldana, Alisdair R. Fernie, Patrick Giavalisco, Matthew A. Hannah, Henning Redestig, Dirk Steinhauser	Integrative Analysis of Transcriptome and Metabolome Data.	German Conference on Bioinformatics	2007	DBLP BibTeX RDF
1	Angelica Lindlöf, Marcus Bräutigam, Aakash Chawade, Björn Olsson, Olof Olsson	Identification of Cold-Induced Genes in Cereal Crops and Arabidopsis Through Comparative Analysis of Multiple EST Sets.	BIRD	2007	DBLP DOI BibTeX RDF
1	Miki Hirabayashi, Hirotada Ohashi, Tai Kubo	Experimental Validation of the Transcription-Based Diagnostic Automata with Quantitative Control by Programmed Molecules.	DNA	2007	DBLP DOI BibTeX RDF	nucleic acid detection systems, molecular programming, autonomous diagnostic devices, molecular circuits, DNA computing, Biomolecular computing
1	Magnólia A. Campos, Flávia B. Silva, Marilia S. Silva, Érika E. V. S. Albuquerque, Alexandre M. do Amaral, Cristiane C. Teixeira, Ângela Mehta, Maria Fátima G. Sá	Identification of the Putative Class 3 R Genes in Coffea arabica from CafEST Database.	BSB	2007	DBLP DOI BibTeX RDF	coffee tree, plant resistance, NBS, LRR, TIR
1	Oliver Laule, Matthias Hirsch-Hoffmann, Tomas Hruz, Wilhelm Gruissem, Philip Zimmermann	Web-based analysis of the mouse transcriptome using Genevestigator.	BMC Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Philippe La Rosa, Eric Viara, Philippe Hupé, Gaëlle Pierron, Stéphane Liva, Pierre Neuvial, Isabel Brito, Séverine Lair, Nicolas Servant, Nicolas Robine, Elodie Manié, Caroline Brennetot, Isabelle Janoueix-Lerosey, Virginie Raynal, Nadège Gruel, Céline Rouveirol, Nicolas Stransky, Marc-Henri Stern, Olivier Delattre, Alain Aurias, François Radvanyi, Emmanuel Barillot	VAMP: Visualization and analysis of array-CGH, transcriptome and other molecular profiles.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Simon J. Galbraith, Linh M. Tran, James C. Liao	Transcriptome network component analysis with limited microarray data.	Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Sebastian Noth, Guillaume Brysbaert, François-Xavier Pellay, Arndt Benecke	High-Sensitivity Transcriptome Data Structure and Implications for Analysis and Biologic Interpretation.	Genomics, Proteomics & Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Sebastian Noth, Guillaume Brysbaert, Arndt Benecke	Normalization Using Weighted Negative Second Order Exponential Error Functions (NeONORM) Provides Robustness Against Asymmetries in Comparative Transcriptome Profiles and Avoids False Calls.	Genomics, Proteomics & Bioinformatics	2006	DBLP DOI BibTeX RDF
1	Adil Elfilali, Séverine Lair, Catia Verbeke, Philippe La Rosa, François Radvanyi, Emmanuel Barillot	ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis.	Nucleic Acids Research	2006	DBLP DOI BibTeX RDF
1	Tala Bakheet, Bryan R. G. Williams, Khalid S. A. Khabar	ARED 3.0: the large and diverse AU-rich transcriptome.	Nucleic Acids Research	2006	DBLP DOI BibTeX RDF
1	Chisato Yamasaki, Hiroaki Kawashima, Fusano Todokoro, Yasuhiro Imamizu, Makoto Ogawa, Motohiko Tanino, Takeshi Itoh, Takashi Gojobori, Tadashi Imanishi	TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB.	Nucleic Acids Research	2006	DBLP DOI BibTeX RDF
1	Jae Yoo, David W. Digby, Adam Davis, William Seffens	Whole transcriptome mRNA secondary structure analysis using distributed computation.	GrC	2006	DBLP BibTeX RDF
1	Márcia A. Inda, Adam Belloum, Marco Roos, Dmitry Vasunin, Cees T. A. M. de Laat, Louis O. Hertzberger, Timo M. Breit	Interactive Workflows in a Virtual Laboratory for e-Bioscience: The SigWin-Detector Tool for Gene Expression Analysis.	e-Science	2006	DBLP DOI BibTeX RDF
1	Hans A. Kestler, Wolfgang Lindner, André Müller	Learning and Feature Selection Using the Set Covering Machine with Data-Dependent Rays on Gene Expression Profiles.	ANNPR	2006	DBLP DOI BibTeX RDF
1	Shibin Qiu, Cundong Yang, Terran Lane	Efficient Target Detection for RNA Interference.	GPC	2006	DBLP DOI BibTeX RDF
1	Shibin Qiu, Terran Lane	Phase Transitions in Gene Knockdown Networks of Transitive RNAi.	International Conference on Computational Science	2006	DBLP DOI BibTeX RDF
1	Jan H. Vogel, Anja von Heydebreck, Antje Purmann, Silke Sperling	Chromosomal clustering of a human transcriptome reveals regulatory background.	BMC Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Shinichiro Wachi, Ken Yoneda, Reen Wu	Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	Toni Reverter-Gomez, S. M. McWilliam, Wes Barris, Brian P. Dalrymple	A rapid method for computationally inferring transcriptome coverage and microarray sensitivity.	Bioinformatics	2005	DBLP DOI BibTeX RDF
1	James P. Carson, Tao Ju, Hui-Chen Lu, Christina Thaller, Mei Xu, Sarah L. Pallas, Michael C. Crair, Joe D. Warren, Wah Chiu, Gregor Eichele	A Digital Atlas to Characterize the Mouse Brain Transcriptome.	PLoS Computational Biology	2005	DBLP DOI BibTeX RDF