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Found 139 publication records. Showing 138 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Sarah M. Alghamdi, Robert Hoehndorf |
Improving the classification of cardinality phenotypes using collections.  |
J. Biomed. Semant.  |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Senay Kafkas, Marwa Abdelhakim, Mahmut Uludag, Azza Althagafi, Malak Alghamdi, Robert Hoehndorf |
Starvar: symptom-based tool for automatic ranking of variants using evidence from literature and genomes. |
BMC Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fernando Zhapa-Camacho, Maxat Kulmanov, Robert Hoehndorf |
mOWL: Python library for machine learning with biomedical ontologies. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya Bathla Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin T. Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook E. Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter |
An Open-Source Knowledge Graph Ecosystem for the Life Sciences. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Md Nurul Muttakin, Malik Shahid Sultan, Robert Hoehndorf, Hernando Ombao |
Stylized Projected GAN: A Novel Architecture for Fast and Realistic Image Generation. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fernando Zhapa-Camacho, Robert Hoehndorf |
From axioms over graphs to vectors, and back again: evaluating the properties of graph-based ontology embeddings. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Lars Vogt, Tobias Kuhn, Robert Hoehndorf |
Semantic Units: Organizing knowledge graphs into semantically meaningful units of representation. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fernando Zhapa-Camacho, Robert Hoehndorf |
CatE: Embedding ALC ontologies using category-theoretical semantics. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Luke T. Slater, John A. Williams 0002, Paul N. Schofield, Sophie Russell, Samantha C. Pendleton, Andreas Karwath, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos |
Klarigi: Characteristic explanations for semantic biomedical data. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fernando Zhapa-Camacho, Robert Hoehndorf |
Evaluating Different Methods for Semantic Reasoning Over Ontologies. |
QALD/SemREC@ISWC |
2023 |
DBLP BibTeX RDF |
|
| 1 | Zhenwei Tang, Shichao Pei, Xi Peng, Fuzhen Zhuang, Xiangliang Zhang 0001, Robert Hoehndorf |
Neural Multi-hop Logical Query Answering with Concept-Level Answers. |
ISWC |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fernando Zhapa-Camacho, Robert Hoehndorf |
From Axioms over Graphs to Vectors, and Back Again: Evaluating the Properties of Graph-based Ontology Embeddings. |
NeSy |
2023 |
DBLP BibTeX RDF |
|
| 1 | Sumyyah Toonsi, Senay Kafkas, Robert Hoehndorf |
Exploring the Use of Ontology Components for Distantly-Supervised Disease and Phenotype Named Entity Recognition. |
ICBO |
2023 |
DBLP BibTeX RDF |
|
| 1 | Núria Queralt-Rosinach, Paul N. Schofield, Marco Roos, Robert Hoehndorf |
Updating the CEMO ontology for future epidemiological challenges. |
SWAT4HCLS |
2023 |
DBLP BibTeX RDF |
|
| 1 | Yongqun He, Hong Yu 0014, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng 0001, Anna Maria Masci, Liwei Wang 0010, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith 0001 |
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. |
J. Biomed. Semant. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Azza Althagafi, Lamia Alsubaie, Nagarajan Kathiresan, Katsuhiko Mineta, Taghrid Aloraini, Fuad Al Mutairi, Majid Alfadhel, Takashi Gojobori, Ahmad Alfares, Robert Hoehndorf |
DeepSVP: integration of genotype and phenotype for structural variant prioritization using deep learning. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhenwei Tang, Shichao Pei, Zhao Zhang 0011, Yongchun Zhu, Fuzhen Zhuang, Robert Hoehndorf, Xiangliang Zhang 0001 |
Positive-Unlabeled Learning with Adversarial Data Augmentation for Knowledge Graph Completion. |
CoRR |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Xi Peng, Zhenwei Tang, Maxat Kulmanov, Kexin Niu, Robert Hoehndorf |
Description Logic EL++ Embeddings with Intersectional Closure. |
CoRR |
2022 |
DBLP BibTeX RDF |
|
| 1 | Zhenwei Tang, Tilman Hinnerichs, Xi Peng, Xiangliang Zhang 0001, Robert Hoehndorf |
FALCON: Sound and Complete Neural Semantic Entailment over ALC Ontologies. |
CoRR |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhenwei Tang, Shichao Pei, Xi Peng, Fuzhen Zhuang, Xiangliang Zhang 0001, Robert Hoehndorf |
Joint Abductive and Inductive Neural Logical Reasoning. |
CoRR |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Luke T. Slater, Sophie Russell, Silver Makepeace, Alexander Carberry, Andreas Karwath, John A. Williams 0002, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos |
Evaluating semantic similarity methods for comparison of text-derived phenotype profiles. |
BMC Medical Informatics Decis. Mak. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Sarah M. Alghamdi, Fernando Zhapa-Camacho, Robert Hoehndorf |
A-LIOn - alignment learning through inconsistency negatives of the aligned ontologies. |
OM@ISWC |
2022 |
DBLP BibTeX RDF |
|
| 1 | Ali Syed, Senay Kafkas, Maxat Kulmanov, Robert Hoehndorf |
Using SPARQL to Unify Queries over Data, Ontologies, and Machine Learning Models in the PhenomeBrowser Knowledgebase. |
SWAT4HCLS |
2022 |
DBLP BibTeX RDF |
|
| 1 | Zhenwei Tang, Shichao Pei, Zhao Zhang 0011, Yongchun Zhu, Fuzhen Zhuang, Robert Hoehndorf, Xiangliang Zhang 0001 |
Positive-Unlabeled Learning with Adversarial Data Augmentation for Knowledge Graph Completion. |
IJCAI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Senay Kafkas, Sara Althubaiti, Georgios V. Gkoutos, Robert Hoehndorf, Paul N. Schofield |
Linking common human diseases to their phenotypes; development of a resource for human phenomics. |
J. Biomed. Semant. |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Luke T. Slater, William Bradlow, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos |
Improved characterisation of clinical text through ontology-based vocabulary expansion. |
J. Biomed. Semant. |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxat Kulmanov, Fatima Zohra Smaili, Xin Gao 0001, Robert Hoehndorf |
Semantic similarity and machine learning with ontologies. |
Briefings Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxat Kulmanov, Fernando Zhapa-Camacho, Robert Hoehndorf |
DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web. |
Nucleic Acids Res. |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Luke T. Slater, Andreas Karwath, Robert Hoehndorf, Georgios V. Gkoutos |
Effects of Negation and Uncertainty Stratification on Text-Derived Patient Profile Similarity. |
Frontiers Digit. Health |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxat Kulmanov, Robert Hoehndorf |
DeepGOPlus: improved protein function prediction from sequence. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Wang Liu-Wei, Senay Kafkas, Jun Chen 0021, Nicholas J. Dimonaco, Jesper Tegnér, Robert Hoehndorf |
DeepViral: prediction of novel virus-host interactions from protein sequences and infectious disease phenotypes. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Tilman Hinnerichs, Robert Hoehndorf |
DTI-Voodoo: machine learning over interaction networks and ontology-based background knowledge predicts drug-target interactions. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Jun Chen 0021, Azza Althagafi, Robert Hoehndorf |
Predicting candidate genes from phenotypes, functions and anatomical site of expression. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Luke T. Slater, John A. Williams 0002, Andreas Karwath, Hilary Fanning, Simon Ball, Paul N. Schofield, Robert Hoehndorf, Georgios V. Gkoutos |
Multi-faceted semantic clustering with text-derived phenotypes. |
Comput. Biol. Medicine |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Luke T. Slater, Andreas Karwath, John A. Williams 0002, Sophie Russell, Silver Makepeace, Alexander Carberry, Robert Hoehndorf, Georgios V. Gkoutos |
Towards similarity-based differential diagnostics for common diseases. |
Comput. Biol. Medicine |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Luke T. Slater, William Bradlow, Dino FA. Motti, Robert Hoehndorf, Simon Ball, Georgios V. Gkoutos |
A fast, accurate, and generalisable heuristic-based negation detection algorithm for clinical text. |
Comput. Biol. Medicine |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Emilio M. Sanfilippo, Oliver Kutz, Nicolas Troquard, Torsten Hahmann, Claudio Masolo, Robert Hoehndorf, Randi Vita, Maria M. Hedblom, Guendalina Righetti, Dusan Sormaz, Walter Terkaj, Tiago Prince Sales, Sergio de Cesare, Frederik Gailly, Giancarlo Guizzardi, Mark Lycett, Chris Partridge, Oscar Pastor 0001, Daniel Beßler, Stefano Borgo, Mohammed Diab, Aldo Gangemi, Alberto Olivares Alarcos, Mihai Pomarlan, Robert Porzel, Ludger Jansen, Mathias Brochhausen, Daniele Porello, Pawel Garbacz, Selja Seppälä, Michael Grüninger, Amanda Vizedom, Damion M. Dooley, Robert Warren, Hande Küçük-McGinty, Matthew Lange, Alsayed Algergawy, Naouel Karam, Friederike Klan, Franck Michel, Ilaria Rosati (eds.) |
Proceedings of the Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021), and the 12th International Conference on Biomedical Ontologies (ICBO 2021), Bolzano, Italy, September 11-18, 2021. |
JOWO |
2021 |
DBLP BibTeX RDF |
|
| 1 | Sara Althubaiti, Senay Kafkas, Marwa Abdelhakim, Robert Hoehndorf |
Combining lexical and context features for automatic ontology extension. |
J. Biomed. Semant. |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida 0005, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson 0002, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi |
BioHackathon 2015: Semantics of data for life sciences and reproducible research. |
F1000Research |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxat Kulmanov, Robert Hoehndorf |
DeepGOPlus: improved protein function prediction from sequence. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Fatima Zohra Smaili, Xin Gao 0001, Robert Hoehndorf |
Formal axioms in biomedical ontologies improve analysis and interpretation of associated data. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Jun Chen 0021, Robert Hoehndorf, Mohamed Elhoseiny, Xiangliang Zhang 0001 |
Efficient long-distance relation extraction with DG-SpanBERT. |
CoRR |
2020 |
DBLP BibTeX RDF |
|
| 1 | Luke T. Slater, Georgios V. Gkoutos, Robert Hoehndorf |
Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies. |
BMC Medical Informatics Decis. Mak. |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxat Kulmanov, Robert Hoehndorf |
DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier. |
PLoS Comput. Biol. |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Karl Hammar, Oliver Kutz, Anastasia Dimou, Torsten Hahmann, Robert Hoehndorf, Claudio Masolo, Randi Vita, Sarra Ben Abbès, Rim Hantach, Philippe Calvez, Tiago Prince Sales, Daniele Porello, Daniel Beßler, Stefano Borgo, Mohammed Diab, Aldo Gangemi, Alberto Olivares Alarcos, Mihai Pomarlan, Robert Porzel, Martin G. Skjæveland, Daniel P. Lupp, Ian Horrocks 0001, Johan W. Klüwer, Christian Kindermann, Loris Bozzato, Till Mossakowski, Luciano Serafini (eds.) |
Proceedings of the Joint Ontology Workshops co-located with the Bolzano Summer of Knowledge (BOSK 2020), Virtual & Bozen-Bolzano, Italy, August 31st to October 7th, 2020. |
JOWO |
2020 |
DBLP BibTeX RDF |
|
| 1 | Senay Kafkas, Robert Hoehndorf |
Ontology based mining of pathogen-disease associations from literature. |
J. Biomed. Semant. |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang 0040, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson 0002, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi |
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. |
F1000Research |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Imane Boudellioua, Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf |
DeepPVP: phenotype-based prioritization of causative variants using deep learning. |
BMC Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Senay Kafkas, Robert Hoehndorf |
Ontology based text mining of gene-phenotype associations: application to candidate gene prediction. |
Database J. Biol. Databases Curation |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Fatima Zohra Smaili, Xin Gao 0001, Robert Hoehndorf |
OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction. |
Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxat Kulmanov, Wang Liu-Wei, Yuan Yan, Robert Hoehndorf |
EL Embeddings: Geometric construction of models for the Description Logic EL ++. |
CoRR |
2019 |
DBLP BibTeX RDF |
|
| 1 | Shichao Pei, Lu Yu 0006, Robert Hoehndorf, Xiangliang Zhang 0001 |
Semi-Supervised Entity Alignment via Knowledge Graph Embedding with Awareness of Degree Difference. |
WWW |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxat Kulmanov, Wang Liu-Wei, Yuan Yan, Robert Hoehndorf |
EL Embeddings: Geometric Construction of Models for the Description Logic EL++. |
IJCAI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Miguel Ángel Rodríguez-García, Robert Hoehndorf |
Inferring ontology graph structures using OWL reasoning. |
BMC Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath |
Notions of similarity for systems biology models. |
Briefings Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf |
The anatomy of phenotype ontologies: principles, properties and applications. |
Briefings Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Fatima Zohra Smaili, Xin Gao 0001, Robert Hoehndorf |
Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf |
Ontology-based validation and identification of regulatory phenotypes. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Mona Alshahrani, Robert Hoehndorf |
Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxat Kulmanov, Mohammad Asif Khan 0001, Robert Hoehndorf |
DeepGO: predicting protein functions from sequence and interactions using a deep ontology-aware classifier. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Fatima Zohra Smaili, Xin Gao 0001, Robert Hoehndorf |
Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations. |
CoRR |
2018 |
DBLP BibTeX RDF |
|
| 1 | Fatima Zohra Smaili, Xin Gao 0001, Robert Hoehndorf |
OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction. |
CoRR |
2018 |
DBLP BibTeX RDF |
|
| 1 | Robert Hoehndorf, Claus Weiland, Marco Schmidt 0003, Quentin Groom, George Gosline, Stefan Dressler, Thomas Hamann |
The Flora Phenotype Ontology (FLOPO) and the FLOPO Knowledgebase. |
Application of Semantic Technology in Biodiversity Science |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxat Kulmanov, Senay Kafkas, Andreas Karwath, Alexander Malic, Georgios V. Gkoutos, Michel Dumontier, Robert Hoehndorf |
Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings. |
SWAT4LS |
2018 |
DBLP BibTeX RDF |
|
| 1 | Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf |
Integrating phenotype ontologies with PhenomeNET. |
J. Biomed. Semant. |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxat Kulmanov, Robert Hoehndorf |
Evaluating the effect of annotation size on measures of semantic similarity. |
J. Biomed. Semant. |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Robert Hoehndorf, Núria Queralt-Rosinach |
Data Science and symbolic AI: Synergies, challenges and opportunities. |
Data Sci. |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Senay Kafkas, Sirarat Sarntivijai, Robert Hoehndorf |
Usage of cell nomenclature in biomedical literature. |
BMC Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath |
Notions of similarity for systems biology models. |
Briefings Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Mona Alshahrani, Mohammad Asif Khan 0001, Omar Maddouri, Akira R. Kinjo, Núria Queralt-Rosinach, Robert Hoehndorf |
Neuro-symbolic representation learning on biological knowledge graphs. |
Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxat Kulmanov, Mohammad Asif Khan 0001, Robert Hoehndorf |
DeepGO: Predicting protein functions from sequence and interactions using a deep ontology-aware classifier. |
CoRR |
2017 |
DBLP BibTeX RDF |
|
| 1 | Imane Boudellioua, Rozaimi B. Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B. Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf |
Semantic prioritization of novel causative genomic variants. |
PLoS Comput. Biol. |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Hannah M. Fisher, Robert Hoehndorf, Bruno S. Bazelato, Soheil S. Dadras, Lloyd E. King, Georgios V. Gkoutos, John P. Sundberg, Paul N. Schofield |
DermO; an ontology for the description of dermatologic disease. |
J. Biomed. Semant. |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf |
Using AberOWL for fast and scalable reasoning over BioPortal ontologies. |
J. Biomed. Semant. |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Robert Hoehndorf, Mona Alshahrani, Georgios V. Gkoutos, George Gosline, Quentin Groom, Thomas Hamann, Jens Kattge, Sylvia Mota de Oliveira, Marco Schmidt 0003, Soraya Sierra, Erik Smets, Rutger A. Vos, Claus Weiland |
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. |
J. Biomed. Semant. |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Jerven T. Bolleman, Christopher J. Mungall, Francesco Strozzi, Joachim Baran, Michel Dumontier, Raoul Jean Pierre Bonnal, Robert M. Buels, Robert Hoehndorf, Takatomo Fujisawa, Toshiaki Katayama, Peter J. A. Cock |
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. |
J. Biomed. Semant. |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Adil Salhi, Magbubah Essack, Aleksandar Radovanovic, Benoit Marchand, Salim Bougouffa, André Antunes 0001, Marta Filipa Simões, Feras F. Lafi, Olaa A. Motwalli, Ameerah Bokhari, Tariq Malas, Soha Al Amoudi, Ghofran Othum, Intikhab Alam, Katsuhiko Mineta, Xin Gao 0001, Robert Hoehndorf, John A. C. Archer, Takashi Gojobori, Vladimir B. Bajic |
DESM: portal for microbial knowledge exploration systems. |
Nucleic Acids Res. |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Mona Alshahrani, Mohammad Asif Khan 0001, Omar Maddouri, Akira R. Kinjo, Núria Queralt-Rosinach, Robert Hoehndorf |
Neuro-symbolic representation learning on biological knowledge graphs. |
CoRR |
2016 |
DBLP BibTeX RDF |
|
| 1 | Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf |
Integrating phenotype ontologies with PhenomeNET. |
OM@ISWC |
2016 |
DBLP BibTeX RDF |
|
| 1 | Emma J. Griffiths, Damion M. Dooley, Pier Luigi Buttigieg, Robert Hoehndorf, Fiona S. L. Brinkman, William W. L. Hsiao |
FoodON: A Global Farm-to-Fork Food Ontology. |
ICBO/BioCreative |
2016 |
DBLP BibTeX RDF |
|
| 1 | Mona Alshahrani, Hussein Almashouq, Robert Hoehndorf |
SPARQL2OWL: Towards Bridging the Semantic Gap Between RDF and OWL. |
ICBO/BioCreative |
2016 |
DBLP BibTeX RDF |
|
| 1 | Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf |
To MIREOT or not to MIREOT? A Case Study of the Impact of Using MIREOT in the Experimental Factor Ontology (EFO). |
ICBO/BioCreative |
2016 |
DBLP BibTeX RDF |
|
| 1 | Miguel Ángel Rodríguez-García, Luke T. Slater, Imane Boudellioua, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf |
Updates to the AberOWL Ontology Repository. |
ICBO/BioCreative |
2016 |
DBLP BibTeX RDF |
|
| 1 | Pankaj Jaiswal, Robert Hoehndorf, Cecilia N. Arighi, Austin Meier (eds.) |
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016. |
ICBO/BioCreative |
2016 |
DBLP BibTeX RDF |
|
| 1 | Claus Weiland, Robert Hoehndorf, George Gosline, Quentin Groom, Thomas Hamann, Marco Schmidt 0003 |
FLOPO - An Ontology for the Integration of Trait Data from Digitized Floras and Plant Image Collections. |
SWAT4LS |
2016 |
DBLP BibTeX RDF |
|
| 1 | Robert Hoehndorf, Liam Mencel, Georgios V. Gkoutos, Paul N. Schofield |
Large-Scale Reasoning over Functions in Biomedical Ontologies. |
FOIS |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Robert Hoehndorf, Michael Gruenberger, Georgios V. Gkoutos, Paul N. Schofield |
Similarity-based search of model organism, disease and drug effect phenotypes. |
J. Biomed. Semant. |
2015 |
DBLP DOI BibTeX RDF |
|
| 1 | Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos |
Aber-OWL: a framework for ontology-based data access in biology. |
BMC Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
| 1 | Robert Hoehndorf, Paul N. Schofield, Georgios V. Gkoutos |
The role of ontologies in biological and biomedical research: a functional perspective. |
Briefings Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
| 1 | Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf |
AberOWL: an ontology portal with OWL EL reasoning. |
ICBO |
2015 |
DBLP BibTeX RDF |
|
| 1 | Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf |
Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies. |
ICBO |
2015 |
DBLP BibTeX RDF |
|
| 1 | Luke T. Slater, Miguel Ángel Rodríguez-García, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf |
Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning. |
OWLED |
2015 |
DBLP DOI BibTeX RDF |
|
| 1 | Miguel Ángel Rodríguez-García, Luke T. Slater, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf |
Visualising Ontologies with AberOWL. |
SWAT4LS |
2015 |
DBLP BibTeX RDF |
|
| 1 | Robert Hoehndorf, Dietrich Rebholz-Schuhmann, Melissa A. Haendel, Robert Stevens 0001 |
Thematic series on biomedical ontologies in JBMS: challenges and new directions. |
J. Biomed. Semant. |
2014 |
DBLP DOI BibTeX RDF |
|
| 1 | Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf |
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. |
J. Biomed. Semant. |
2014 |
DBLP DOI BibTeX RDF |
|
| 1 | Robert Hoehndorf, Tanya Hiebert, Nigel W. Hardy, Paul N. Schofield, Georgios V. Gkoutos, Michel Dumontier |
Mouse model phenotypes provide information about human drug targets. |
Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
| 1 | Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos |
Aber-OWL: a framework for ontology-based data access in biology. |
CoRR |
2014 |
DBLP BibTeX RDF |
|
| 1 | Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos |
Aber-OWL: A Framework for Ontology-based Data Access in Biology. |
SWAT4LS |
2014 |
DBLP BibTeX RDF |
|
| 1 | Daniel L. Cook, Maxwell Lewis Neal, Robert Hoehndorf, Georgios V. Gkoutos, John H. Gennari |
Representing physiological processes and their participants with PhysioMaps. |
J. Biomed. Semant. |
2013 |
DBLP BibTeX RDF |
|
| 1 | Dietrich Rebholz-Schuhmann, Senay Kafkas, Jee-Hyub Kim, Chen Li 0011, Antonio Jimeno-Yepes, Robert Hoehndorf, Rolf Backofen, Ian Lewin |
Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources. |
J. Biomed. Semant. |
2013 |
DBLP DOI BibTeX RDF |
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