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Found 149 publication records. Showing 148 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Dina Demner-Fushman, Sophia Ananiadou, Kevin Cohen 0001 (eds.) |
The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023.  |
BioNLP@ACL  |
2023 |
DBLP BibTeX RDF |
|
| 1 | Kaiyin Zhou, Sheng Zhang, Yuxing Wang, Kevin Bretonnel Cohen, Jin-Dong Kim, Qi Luo, Xinzhi Yao, Xingyu Zhou 0003, Jingbo Xia |
High-quality gene/disease embedding in a multi-relational heterogeneous graph after a joint matrix/tensor decomposition. |
J. Biomed. Informatics |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii (eds.) |
Proceedings of the 21st Workshop on Biomedical Language Processing, BioNLP@ACL 2022, Dublin, Ireland, May 26, 2022 |
BioNLP@ACL |
2022 |
DBLP BibTeX RDF |
|
| 1 | Kaiyin Zhou, Yuxing Wang, Kevin Bretonnel Cohen, Jin-Dong Kim, Xiaohang Ma, Zhixue Shen, Xiangyu Meng, Jingbo Xia |
Bridging heterogeneous mutation data to enhance disease gene discovery. |
Briefings Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii (eds.) |
Proceedings of the 20th Workshop on Biomedical Language Processing, BioNLP@NAACL-HLT 2021, Online, June 11, 2021 |
BioNLP@NAACL-HLT |
2021 |
DBLP BibTeX RDF |
|
| 1 | Kevin Bretonnel Cohen, Anna M. Ripple, Asma Ben Abacha, Olivier Bodenreider, Orin Hargraves, Karin Verspoor, Pierre Zweigenbaum, Dina Demner-Fushman |
Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know. |
AMIA |
2021 |
DBLP BibTeX RDF |
|
| 1 | Zfania Tom Korach, Stephen C. Gradwohl, Amanda I. Messinger, Kelly Bookman, Kevin Cohen 0001, Li Zhou, Foster R. Goss |
Unsupervised clinical relevancy ranking of structured medical records to retrieve condition-specific information in the emergency department. |
Int. J. Medical Informatics |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Kevin Cohen 0001, Karën Fort, Margot Mieskes, Aurélie Névéol, Anna Rogers |
Reviewing Natural Language Processing Research. |
EACL (Tutorial Abstracts) |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Daniela Gîfu, Youzhu Li, Anna Ripple, Jingbo Xia |
MEDA 2020: The Curative Power of Medical Data. |
JCDL |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Daniela Gîfu |
Writing about Data Science Research for Digital Libraries. |
JCDL |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Karën Fort, Margot Mieskes, Aurélie Névéol |
Reviewing Natural Language Processing Research. |
ACL (tutorial) |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida 0005, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson 0002, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi |
BioHackathon 2015: Semantics of data for life sciences and reproducible research. |
F1000Research |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Karin Verspoor, Kevin Bretonnel Cohen, Michael Conway, Berry de Bruijn, Mark Dredze, Rada Mihalcea, Byron C. Wallace (eds.) |
Proceedings of the 1st Workshop on NLP for COVID-19@ EMNLP 2020, Online, December 2020 |
NLP4COVID@EMNLP |
2020 |
DBLP BibTeX RDF |
|
| 1 | Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii (eds.) |
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, BioNLP 2020, Online, July 9, 2020 |
BioNLP |
2020 |
DBLP BibTeX RDF |
|
| 1 | Jin-Dong Kim, Yue Wang 0040, Toyofumi Fujiwara, Shujiro Okuda, Tiffany J. Callahan, K. Bretonnel Cohen |
Open Agile text mining for bioinformatics: the PubAnnotation ecosystem. |
Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Margot Mieskes, Karën Fort, Aurélie Névéol, Cyril Grouin, K. Bretonnel Cohen |
Community Perspective on Replicability in Natural Language Processing. |
RANLP |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Lawrence E. Hunter, Peter S. Pressman |
P-Hacking Lexical Richness Through Definitions of "Type" and "Token". |
MedInfo |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang 0040, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson 0002, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi |
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. |
F1000Research |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Rachel Bawden, Kevin Bretonnel Cohen, Cristian Grozea, Antonio Jimeno-Yepes, Madeleine Kittner, Martin Krallinger, Nancy Mah, Aurélie Névéol, Mariana L. Neves, Felipe Soares, Amy Siu, Karin Verspoor, Maika Vicente Navarro |
Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies. |
WMT (3) |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii (eds.) |
Proceedings of the 18th BioNLP Workshop and Shared Task, BioNLP@ACL 2019, Florence, Italy, August 1, 2019. |
BioNLP@ACL |
2019 |
DBLP BibTeX RDF |
|
| 1 | Daniela Gîfu, Diana Trandabat, Kevin Cohen 0001, Jingbo Xia |
Special Issue on the Curative Power of Medical Data. |
Data |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Yuxing Wang, Jingbo Xia, Kaiyin Zhou, Jin-Dong Kim, Kevin Cohen 0001, Mina Gachloo, Yuxin Ren, Shanghui Nie, Xuan Qin, Panzhong Lu |
An Active Gene Annotation Corpus and Its Application on Anti-epilepsy Drug Discovery. |
BIBM |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Mayla Boguslav, K. Bretonnel Cohen, William A. Baumgartner Jr., Lawrence E. Hunter |
Improving precision in concept normalization. |
PSB |
2018 |
DBLP BibTeX RDF |
|
| 1 | Sonia Cardoso, Xavier Aimé, Vincent Meininger, David Grabli, K. Bretonnel Cohen, Jean Charlet |
De l'intérêt des ontologies modulaires. Application à la modélisation de la prise en charge de la SLA. |
IC |
2018 |
DBLP BibTeX RDF |
|
| 1 | Sonia Cardoso, Xavier Aimé, Vincent Meininger, David Grabli, Luis Felipe Melo Mora, K. Bretonnel Cohen, Jean Charlet |
A Modular Ontology for Modeling Service Provision in a Communication Network for Coordination of Care. |
MIE |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Jingbo Xia, Pierre Zweigenbaum, Tiffany Callahan, Orin Hargraves, Foster R. Goss, Nancy Ide, Aurélie Névéol, Cyril Grouin, Lawrence E. Hunter |
Three Dimensions of Reproducibility in Natural Language Processing. |
LREC |
2018 |
DBLP BibTeX RDF |
|
| 1 | Daniela Gîfu, Diana Trandabat, Kevin Bretonnel Cohen, Jingbo Xia |
The Curative Power of Medical Data. |
JCDL |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Yuxing Wang, Xinzhi Yao, Kaiyin Zhou, Xuan Qin, Jin-Dong Kim, Kevin Bretonnel Cohen, Jingbo Xia |
Guideline Design of an Active Gene Annotation Corpus for the Purpose of Drug Repurposing. |
CISP-BMEI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii (eds.) |
Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018 |
BioNLP |
2018 |
DBLP BibTeX RDF |
|
| 1 | Kaiyin Zhou, Xinzhi Yao, Shuguang Wang, Jin-Dong Kim, Kevin Bretonnel Cohen, Ruiying Chen, Yuxing Wang, Jingbo Xia |
Trigger Words Detection by Integrating Attention Mechanism into Bi-LSTM Neural Network - A Case Study in PubMED-Wide Trigger Words Detection for Pancreatic Cancer. |
CCL |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Kaiyin Zhou, Sheng Zhang, Xiangyu Meng, Qi Luo, Yuxing Wang, Ke Ding, Yukun Feng, Mo Chen, Kevin Cohen 0001, Jingbo Xia |
CRF-LSTM Text Mining Method Unveiling the Pharmacological Mechanism of Off-target Side Effect of Anti-Multiple Myeloma Drugs. |
BioNLP |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Arrick Lanfranchi, Miji Joo-young Choi, Michael Bada, William A. Baumgartner Jr., Natalya Panteleyeva, Karin Verspoor, Martha Palmer, Lawrence E. Hunter |
Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles. |
BMC Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Brian Connolly, K. Bretonnel Cohen, Daniel Santel, Ulya Bayram, John Pestian |
A nonparametric Bayesian method of translating machine learning scores to probabilities in clinical decision support. |
BMC Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Prabha Yadav, Elisabetta Jezek, Pierrette Bouillon, Tiffany J. Callahan, Michael Bada, Lawrence E. Hunter, K. Bretonnel Cohen |
Semantic Relations in Compound Nouns: Perspectives from Inter-Annotator Agreement. |
MedInfo |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Foster R. Goss, Pierre Zweigenbaum, Lawrence E. Hunter |
Translational Morphosyntax: Distribution of Negation in Clinical Records and Biomedical Journal Articles. |
MedInfo |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | António Branco, Kevin Bretonnel Cohen, Piek Vossen, Nancy Ide, Nicoletta Calzolari |
Erratum to: Replicability and reproducibility of research results for human language technology: introducing an LRE special section. |
Lang. Resour. Evaluation |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | António Branco, Kevin Bretonnel Cohen, Piek Vossen, Nancy Ide, Nicoletta Calzolari |
Replicability and reproducibility of research results for human language technology: introducing an LRE special section. |
Lang. Resour. Evaluation |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Svetla Boytcheva, Kevin Bretonnel Cohen, Guergana Savova, Galia Angelova (eds.) |
Proceedings of the Biomedical NLP Workshop associated with RANLP 2017, Varna, Bulgaria, September 2017 |
BiomedicalNLP@RANLP |
2017 |
DBLP BibTeX RDF |
|
| 1 | Mayla Boguslav, Kevin Bretonnel Cohen |
Inter-Annotator Agreement and the Upper Limit on Machine Performance: Evidence from Biomedical Natural Language Processing. |
MedInfo |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Aurélie Névéol, Aude Robert, Robert Anderson, Kevin Bretonnel Cohen, Cyril Grouin, Thomas Lavergne, Grégoire Rey, Claire Rondet, Pierre Zweigenbaum |
CLEF eHealth 2017 Multilingual Information Extraction task Overview: ICD10 Coding of Death Certificates in English and French. |
CLEF (Working Notes) |
2017 |
DBLP BibTeX RDF |
|
| 1 | Ignacio Tripodi, Kevin Bretonnel Cohen, Lawrence E. Hunter |
A semantic knowledge-base approach to drug-drug interaction discovery. |
BIBM |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Junichi Tsujii (eds.) |
BioNLP 2017, Vancouver, Canada, August 4, 2017 |
BioNLP |
2017 |
DBLP BibTeX RDF |
|
| 1 | Kevin Bretonnel Cohen, Aurélie Névéol, Jingbo Xia, Negacy D. Hailu, Cyril Grouin, Lawrence E. Hunter, Pierre Zweigenbaum |
Reproducibility in Biomedical Natural Language Processing. |
AMIA |
2017 |
DBLP BibTeX RDF |
|
| 1 | Christopher S. Funk, K. Bretonnel Cohen, Lawrence E. Hunter, Karin M. Verspoor |
Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition. |
J. Biomed. Semant. |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Karën Fort, Gilles Adda, K. Bretonnel Cohen |
Introduction. |
Trait. Autom. des Langues |
2016 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, William A. Baumgartner Jr., Irina P. Temnikova |
SuperCAT: The (New and Improved) Corpus Analysis Toolkit. |
LREC |
2016 |
DBLP BibTeX RDF |
|
| 1 | Lynette Hirschman, Karën Fort, Stéphanie Boué, Nikos Kyrpides, Rezarta Islamaj Dogan, Kevin Bretonnel Cohen |
Crowdsourcing and curation: perspectives from biology and natural language processing. |
Database J. Biol. Databases Curation |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Aurélie Névéol, Kevin Bretonnel Cohen, Cyril Grouin, Aude Robert |
Replicability of Research in Biomedical Natural Language Processing: a pilot evaluation for a coding task. |
Louhi@EMNLP |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Aurélie Névéol, Kevin Bretonnel Cohen, Cyril Grouin, Thierry Hamon, Thomas Lavergne, Liadh Kelly, Lorraine Goeuriot, Grégoire Rey, Aude Robert, Xavier Tannier, Pierre Zweigenbaum |
Clinical Information Extraction at the CLEF eHealth Evaluation lab 2016. |
CLEF (Working Notes) |
2016 |
DBLP BibTeX RDF |
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| 1 | Sophia Ananiadou, Riza Batista-Navarro, Kevin Bretonnel Cohen, Dina Demner-Fushman, Paul Thompson 0002 (eds.) |
Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining, BioTxtM@COLING 2016, Osaka, Japan, December 12, 2016 |
BioTxtM@COLING 2016 |
2016 |
DBLP BibTeX RDF |
|
| 1 | Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii (eds.) |
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2016, Berlin, Germany, August 12, 2016 |
BioNLP@ACL |
2016 |
DBLP BibTeX RDF |
|
| 1 | Samuel J. Severance, K. Bretonnel Cohen |
Measuring the readability of medical research journal abstracts. |
BioNLP@IJCNLP |
2015 |
DBLP DOI BibTeX RDF |
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| 1 | Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Kevin Bretonnel Cohen, Elizabeth Wethington, Carsten Görg, Lawrence E. Hunter, Spencer V. Muse, Predrag Radivojac, Jason H. Moore |
Training the Next Generation of Quantitative Biologists in the Era of Big Data. |
Pacific Symposium on Biocomputing |
2015 |
DBLP BibTeX RDF |
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| 1 | Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii (eds.) |
Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, Beijing, China, July 30, 2015 |
BioNLP@IJCNLP |
2015 |
DBLP BibTeX RDF |
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| 1 | Christopher S. Funk, William A. Baumgartner Jr., Benjamin Garcia, Christophe Roeder, Michael Bada, K. Bretonnel Cohen, Lawrence E. Hunter, Karin Verspoor |
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters. |
BMC Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
| 1 | Brian Connolly, Pawel Matykiewicz, K. Bretonnel Cohen, Shannon M. Standridge, Tracy A. Glauser, Dennis J. Dlugos, Susan Koh, Eric Tham, John Pestian |
Research and applications: Assessing the similarity of surface linguistic features related to epilepsy across pediatric hospitals. |
J. Am. Medical Informatics Assoc. |
2014 |
DBLP DOI BibTeX RDF |
|
| 1 | Christopher S. Funk, Lawrence E. Hunter, K. Bretonnel Cohen |
Combining Heterogenous Data for Prediction of Disease Related and Pharmacogenes. |
Pacific Symposium on Biocomputing |
2014 |
DBLP BibTeX RDF |
|
| 1 | Negacy D. Hailu, K. Bretonnel Cohen, Lawrence E. Hunter |
Ontology Translation: A Case Study on Translating the Gene Ontology from English to German. |
NLDB |
2014 |
DBLP DOI BibTeX RDF |
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| 1 | Irina P. Temnikova, William A. Baumgartner Jr., Negacy D. Hailu, Ivelina Nikolova, Tony McEnery, Adam Kilgarriff, Galia Angelova, K. Bretonnel Cohen |
Sublanguage Corpus Analysis Toolkit: A tool for assessing the representativeness and sublanguage characteristics of corpora. |
LREC |
2014 |
DBLP BibTeX RDF |
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| 1 | Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang 0040, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-an Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin |
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. |
J. Biomed. Semant. |
2014 |
DBLP DOI BibTeX RDF |
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| 1 | Cecilia N. Arighi, Cathy H. Wu, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Alfonso Valencia, Zhiyong Lu, W. John Wilbur, Thomas C. Wiegers |
BioCreative-IV virtual issue. |
Database J. Biol. Databases Curation |
2014 |
DBLP DOI BibTeX RDF |
|
| 1 | Graciela Gonzalez 0001, Kevin Bretonnel Cohen, Robert Leaman, Casey S. Greene, Nigam Shah, Maricel G. Kann, Jieping Ye |
Session introduction. |
Pacific Symposium on Biocomputing |
2014 |
DBLP BibTeX RDF |
|
| 1 | Richard Osborne, Alan R. Aronson, Kevin Bretonnel Cohen |
A repository of semantic types in the MIMIC II database clinical notes. |
BioNLP@ACL |
2014 |
DBLP DOI BibTeX RDF |
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| 1 | Negacy D. Hailu, Natalya Panteleyeva, Kevin Bretonnel Cohen |
Temporal Expression Recognition for Cell Cycle Phase Concepts in Biomedical Literature. |
BioNLP@ACL |
2014 |
DBLP DOI BibTeX RDF |
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| 1 | Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii (eds.) |
Proceedings of BioNLP, Baltimore, Maryland, USA, BioNLP@ACL 2014, June 27-28, 2014 |
BioNLP@ACL |
2014 |
DBLP BibTeX RDF |
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| 1 | Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert J. Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila M. Dahdul, Paula M. Mabee, Donghui Li, Bethany R. Harris, Marc Gillespie, Silvia Jimenez, Phoebe M. Roberts, Lisa Matthews, Kevin G. Becker, Harold J. Drabkin, Susan M. Bello, Luana Licata, Andrew Chatr-aryamontri, Mary L. Schaeffer, Julie Park, Melissa A. Haendel, Kimberly Van Auken, Yuling Li, Juancarlos Chan, Hans-Michael Müller, Hong Cui, James P. Balhoff, Chi-Yang Wu, Zhiyong Lu, Chih-Hsuan Wei, Catalina O. Tudor, Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, Juan Miguel Cejuela, Pratibha Dubey, Cathy H. Wu |
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. |
Database J. Biol. Databases Curation |
2013 |
DBLP DOI BibTeX RDF |
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| 1 | K. Bretonnel Cohen, Lawrence E. Hunter |
Chapter 16: Text Mining for Translational Bioinformatics. |
PLoS Comput. Biol. |
2013 |
DBLP DOI BibTeX RDF |
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| 1 | Negacy D. Hailu, Lawrence E. Hunter, K. Bretonnel Cohen |
UColorado_SOM: Extraction of Drug-Drug Interactions from Biomedical Text using Knowledge-rich and Knowledge-poor Features. |
SemEval@NAACL-HLT |
2013 |
DBLP BibTeX RDF |
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| 1 | Irina P. Temnikova, Ivelina Nikolova, William A. Baumgartner Jr., Galia Angelova, K. Bretonnel Cohen |
Closure Properties of Bulgarian Clinical Text. |
RANLP |
2013 |
DBLP BibTeX RDF |
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| 1 | Irina P. Temnikova, Negacy D. Hailu, Galia Angelova, K. Bretonnel Cohen |
Measuring Closure Properties of Patent Sublanguages. |
RANLP |
2013 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Jin-Dong Kim |
Evaluation of SPARQL query generation from natural language questions. |
SWAIE@RANLP |
2013 |
DBLP BibTeX RDF |
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| 1 | Donald C. Comeau, Rezarta Islamaj Dogan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi 0001, Manabu Torii, Alfonso Valencia, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur |
BioC: a minimalist approach to interoperability for biomedical text processing. |
Database J. Biol. Databases Curation |
2013 |
DBLP DOI BibTeX RDF |
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| 1 | Qi Li 0004, Louise Deléger, Todd Lingren, Haijun Zhai, Megan Kaiser, Laura Stoutenborough, Anil G. Jegga, Kevin Bretonnel Cohen, Imre Solti |
Mining FDA drug labels for medical conditions. |
BMC Medical Informatics Decis. Mak. |
2013 |
DBLP DOI BibTeX RDF |
|
| 1 | Graciela Gonzalez 0001, Kevin Bretonnel Cohen, Casey S. Greene, Udo Hahn, Maricel G. Kann, Robert Leaman, Nigam Shah, Jieping Ye |
Session introduction. |
Pacific Symposium on Biocomputing |
2013 |
DBLP BibTeX RDF |
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| 1 | Guergana Savova, Kevin Bretonnel Cohen, Galia Angelova (eds.) |
Proceedings of the Workshop on NLP for Medicine and Biology associated with RANLP 2013, Hissar, Bulgaria, September 13, 2013 |
RANLP (Medicine and Biology) |
2013 |
DBLP BibTeX RDF |
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| 1 | Irina P. Temnikova, Kevin Bretonnel Cohen |
Recognizing Sublanguages in Scientific Journal Articles through Closure Properties. |
BioNLP@ACL |
2013 |
DBLP BibTeX RDF |
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| 1 | Pawel Matykiewicz, Kevin Bretonnel Cohen, Katherine D. Holland, Tracy A. Glauser, Shannon M. Standridge, Karin M. Verspoor, John Pestian |
Earlier Identification of Epilepsy Surgery Candidates Using Natural Language Processing. |
BioNLP@ACL |
2013 |
DBLP BibTeX RDF |
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| 1 | Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Junichi Tsujii (eds.) |
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2013, Sofia, Bulgaria, August 8, 2013 |
BioNLP@ACL |
2013 |
DBLP BibTeX RDF |
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| 1 | Michael Bada, Miriam Eckert, Donald Evans, Kristin Garcia, Krista Shipley, Dmitry Sitnikov, William A. Baumgartner Jr., K. Bretonnel Cohen, Karin Verspoor, Judith A. Blake, Lawrence E. Hunter |
Concept annotation in the CRAFT corpus. |
BMC Bioinform. |
2012 |
DBLP DOI BibTeX RDF |
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| 1 | Lynette Hirschman, Gully A. P. C. Burns, Martin Krallinger, Cecilia N. Arighi, K. Bretonnel Cohen, Alfonso Valencia, Cathy H. Wu, Andrew Chatr-aryamontri, Karen G. Dowell, Eva Huala, Anália Lourenço, Robert S. Nash, Anne-Lise Veuthey, Thomas C. Wiegers, Andrew G. Winter |
Text mining for the biocuration workflow. |
Database J. Biol. Databases Curation |
2012 |
DBLP DOI BibTeX RDF |
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| 1 | Adrien Coulet, K. Bretonnel Cohen, Russ B. Altman |
The state of the art in text mining and natural language processing for pharmacogenomics. |
J. Biomed. Informatics |
2012 |
DBLP DOI BibTeX RDF |
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| 1 | K. Bretonnel Cohen, Lawrence E. Hunter, Martha Palmer |
Assessment of Software Testing and Quality Assurance in Natural Language Processing Applications and a Linguistically Inspired Approach to Improving It. |
EternalS@ECAI |
2012 |
DBLP DOI BibTeX RDF |
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| 1 | Karin Verspoor, Kevin Bretonnel Cohen, Arrick Lanfranchi, Colin Warner, Helen L. Johnson 0001, Christophe Roeder, Jinho D. Choi, Christopher S. Funk, Yuriy Malenkiy, Miriam Eckert, Nianwen Xue, William A. Baumgartner Jr., Michael Bada, Martha Palmer, Lawrence E. Hunter |
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. |
BMC Bioinform. |
2012 |
DBLP DOI BibTeX RDF |
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| 1 | Udo Hahn, Kevin Bretonnel Cohen, Yael Garten, Nigam H. Shah |
Mining the pharmacogenomics literature - a survey of the state of the art. |
Briefings Bioinform. |
2012 |
DBLP DOI BibTeX RDF |
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| 1 | Cathy H. Wu, Cecilia N. Arighi, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Zhiyong Lu, Carolyn J. Mattingly, Alfonso Valencia, Thomas C. Wiegers, W. John Wilbur |
BioCreative-2012 Virtual Issue. |
Database J. Biol. Databases Curation |
2012 |
DBLP DOI BibTeX RDF |
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| 1 | Kevin Bretonnel Cohen, Yael Garten, Nigam Shah, Udo Hahn |
Session introduction. |
Pacific Symposium on Biocomputing |
2012 |
DBLP BibTeX RDF |
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| 1 | Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Bonnie L. Webber, Jun'ichi Tsujii, John Pestian (eds.) |
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, BioNLP@HLT-NAACL Montrèal, Canada, June 8, 2012 |
BioNLP@HLT-NAACL |
2012 |
DBLP BibTeX RDF |
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| 1 | Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel 0001, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii |
U-Compare bio-event meta-service: compatible BioNLP event extraction services. |
BMC Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
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| 1 | Yoshinobu Kano, Makoto Miwa, K. Bretonnel Cohen, Lawrence Hunter, Sophia Ananiadou, Jun'ichi Tsujii |
U-Compare: A modular NLP workflow construction and evaluation system. |
IBM J. Res. Dev. |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Karën Fort, Gilles Adda, K. Bretonnel Cohen |
Amazon Mechanical Turk: Gold Mine or Coal Mine? |
Comput. Linguistics |
2011 |
DBLP DOI BibTeX RDF |
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| 1 | K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson 0001, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Hannah J. Tipney, Lawrence Hunter |
High-Precision Biological Event Extraction: Effects of System and of Data. |
Comput. Intell. |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Tom Christiansen, Lawrence E. Hunter |
MetaMap is a Superior Baseline to a Standard Document Retrieval Engine for the Task of Finding Patient Cohorts in Clinical Free Text. |
TREC |
2011 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Lawrence Hunter, Martha Palmer |
A scaleable automated quality assurance technique for semantic representations and proposition banks. |
Linguistic Annotation Workshop |
2011 |
DBLP BibTeX RDF |
|
| 1 | Elizabeth K. White, K. Bretonnel Cohen, Lawrence Hunter |
Hypothesis and Evidence Extraction from Full-Text Scientific Journal Articles. |
BioNLP@ACL |
2011 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Tom Christiansen, William A. Baumgartner Jr., Karin Verspoor, Lawrence Hunter |
Fast and simple semantic class assignment for biomedical text. |
BioNLP@ACL |
2011 |
DBLP BibTeX RDF |
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| 1 | Cecilia N. Arighi, Zhiyong Lu, Martin Krallinger, Kevin Bretonnel Cohen, W. John Wilbur, Alfonso Valencia, Lynette Hirschman, Cathy H. Wu |
Overview of the BioCreative III Workshop. |
BMC Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
| 1 | Kevin Bretonnel Cohen, Yael Garten, Udo Hahn, Nigam H. Shah |
Workshop Introduction. |
Pacific Symposium on Biocomputing |
2011 |
DBLP BibTeX RDF |
|
| 1 | Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber (eds.) |
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, BioNLP@ACL, Portland, Oregon, USA, June 23-24, 2011 |
BioNLP@ACL |
2011 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen |
BioNLP. |
Handbook of Natural Language Processing |
2010 |
DBLP BibTeX RDF |
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| 1 | Karin Verspoor, Christophe Roeder, Helen L. Johnson 0001, K. Bretonnel Cohen, William A. Baumgartner Jr., Lawrence Hunter |
Exploring Species-Based Strategies for Gene Normalization. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
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