Search results for "BioPAX"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
98	Oliver Ruebenacker, Ion I. Moraru, James C. Schaff, Michael L. Blinov	Kinetic Modeling Using BioPAX Ontology.	BIBM	2007	DBLP DOI BibTeX RDF
58	Giuseppe Agapito, Chiara Pastrello, Pietro Hiram Guzzi, Igor Jurisica, Mario Cannataro	BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways.	Bioinform.	2020	DBLP DOI BibTeX RDF
56	Xiaoshu Wang, Jonas S. Almeida, Arlindo L. Oliveira	Ontology Design Principles and Normalization Techniques in the Web.	DILS	2008	DBLP DOI BibTeX RDF	Uniform Resource Identifier (URI), BioPAX, Ontology, Semantic Web, Resource Description Framework (RDF), Ontology Web Language (OWL)
56	Keyuan Jiang	An Object Model Based Repository for Biological Pathways Using XML Database Technology.	International Conference on Computational Science (2)	2007	DBLP DOI BibTeX RDF	Biological pathway datasets, BioPAX, XML datatype, XML database
29	Camille Juigné, Olivier Dameron, François Moreews, Florence Gondret, Emmanuelle Becker	Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies.	Bioinform.	2023	DBLP DOI BibTeX RDF
29	Giuseppe Agapito, Mario Cannataro	Using BioPAX-Parser (BiP) to enrich lists of genes or proteins with pathway data.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
29	François Moreews, Hugo Simon, Anne Siegel, Florence Gondret, Emmanuelle Becker	PAX2GRAPHML: a python library for large-scale regulation network analysis using BioPAX.	Bioinform.	2021	DBLP DOI BibTeX RDF
29	Giuseppe Agapito, Mario Cannataro	Using BioPAX-Parser (BiP) to Annotate Lists of Biological Entities with Pathway Data.	ER (Workshops)	2020	DBLP DOI BibTeX RDF
29	Giuseppe Agapito	Standards and Models for Biological Data: BioPAX.	Encyclopedia of Bioinformatics and Computational Biology (1)	2019	DBLP DOI BibTeX RDF
29	Aristotelis Kittas, Laura Bennett, Henning Hermjakob, Sophia Tsoka	Organizational principles of the Reactome human BioPAX model using graph theory methods.	J. Complex Networks	2016	DBLP DOI BibTeX RDF
29	Nirupama Benis, Dirkjan Schokker, Frank Kramer 0001, Mari A. Smits, María Suárez-Diez	Building pathway graphs from BioPAX data in R.	F1000Research	2016	DBLP DOI BibTeX RDF
29	Reza Haydarlou, Annika Jacobsen, Nicola Bonzanni, K. Anton Feenstra, Sanne Abeln, Jaap Heringa	BioASF: a framework for automatically generating executable pathway models specified in BioPAX.	Bioinform.	2016	DBLP DOI BibTeX RDF
29	Derek W. Wright, Tim Angus, Anton J. Enright, Tom C. Freeman	Visualisation of BioPAX Networks using BioLayout Express3D.	F1000Research	2014	DBLP DOI BibTeX RDF
29	Özgün Babur, Bülent Arman Aksoy, Igor V. Rodchenkov, Selçuk Onur Sümer, Chris Sander, Emek Demir	Pattern search in BioPAX models.	Bioinform.	2014	DBLP DOI BibTeX RDF
29	Igor V. Rodchenkov, Emek Demir, Chris Sander, Gary D. Bader	The BioPAX Validator.	Bioinform.	2013	DBLP DOI BibTeX RDF
29	Frank Kramer 0001, Michaela Bayerlová, Florian Klemm, Annalen Bleckmann, Tim Beißbarth	rBiopaxParser - an R package to parse, modify and visualize BioPAX data.	Bioinform.	2013	DBLP DOI BibTeX RDF
29	Timo Willemsen, K. Anton Feenstra, Paul Groth	Building Executable Biological Pathway Models Automatically from BioPAX.	LISC@ISWC	2013	DBLP BibTeX RDF
29	Laleh Kazemzadeh, Helena F. Deus, Michel Dumontier, Frank Barry	Looking into Reactome through Biopax Lens.	CSWS	2013	DBLP BibTeX RDF
29	Finja Büchel, Clemens Wrzodek, Florian Mittag, Andreas Dräger, Johannes Eichner, Nicolas Rodriguez 0001, Nicolas Le Novère, Andreas Zell	Qualitative translation of relations from BioPAX to SBML qual.	Bioinform.	2012	DBLP DOI BibTeX RDF
29	Ryan L. Webb, Avi Ma'ayan	Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format.	Source Code Biol. Medicine	2011	DBLP DOI BibTeX RDF
29	Huaiyu Mi, Anushya Muruganujan, Emek Demir, Yukiko Matsuoka, Akira Funahashi, Hiroaki Kitano, Paul D. Thomas	BioPAX support in CellDesigner.	Bioinform.	2011	DBLP DOI BibTeX RDF
29	Leo Lahti	A brief overview on the BioPAX and SBML standards for formal presentation of complex biological knowledge	CoRR	2011	DBLP BibTeX RDF
29	Alptug Dilek, Mehmet E. Belviranli, Ugur Dogrusoz	VISIBIOweb: visualization and layout services for BioPAX pathway models.	Nucleic Acids Res.	2010	DBLP DOI BibTeX RDF
29	Ozgun Babur, Ugur Dogrusöz, Emek Demir, Chris Sander	ChiBE: interactive visualization and manipulation of BioPAX pathway models.	Bioinform.	2010	DBLP DOI BibTeX RDF
29	Donglin Huang, Yiling Huang, Christian Klukas, Ralf Hofestädt, Ming Chen 0005	PBSK browser: Navigate biological pathways of PSI-MI, BioPAX, SBML and KGML formats.	BIBM Workshops	2010	DBLP DOI BibTeX RDF
29	María Jesús García-Godoy, Ismael Navas-Delgado, José Francisco Aldana Montes	SB-KOM: Integration of Pathway Information with BioPax.	JBI	2010	DBLP DOI BibTeX RDF
29	Nikesh Kotecha, Kyle Bruck, William Lu, Nigam Shah	Pathway knowledge base: An integrated pathway resource using BioPAX.	Appl. Ontology	2008	DBLP DOI BibTeX RDF
29	Alan Ruttenberg, Jonathan Rees, Jeremy Zucker	What BioPAX Communicates and how to extend OWL to help it.	OWLED	2006	DBLP BibTeX RDF
29	Keyuan Jiang	Data Integration with BioPAX Pathway Datasets for Automated Navigation.	BIOCOMP	2006	DBLP BibTeX RDF
29	Lena Strömbäck, Patrick Lambrix	Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX.	Bioinform.	2005	DBLP DOI BibTeX RDF
23	Dagmar Köhn, Lena Strömbäck	A Method for Semi-automatic Standard Integration in Systems Biology.	DEXA	2008	DBLP DOI BibTeX RDF
23	Olivier Dameron, Julie Chabalier	Bio-ontologies Tutorial.	DILS	2008	DBLP DOI BibTeX RDF
23	Peter D. Karp, Thomas J. Lee, Valerie Wagner	BioWarehouse: Relational Integration of Eleven Bioinformatics Databases and Formats.	DILS	2008	DBLP DOI BibTeX RDF
23	Joshua Wing Kei Ho, Tristan Manwaring, Seok-Hee Hong 0001, Uwe Röhm, David Cho Yau Fung, Kai Xu 0003, Tim Kraska, David Hart	PathBank: Web-Based Querying and Visualziation of an Integrated Biological Pathway Database.	CGIV	2006	DBLP DOI BibTeX RDF
23	Lena Strömbäck	A method for comparison of standardized information within systems biology.	WSC	2006	DBLP DOI BibTeX RDF
23	Lena Strömbäck	Possibilities and Challenges Using XML Technology for Storage and Integration of Molecular Interactions.	DEXA Workshops	2005	DBLP DOI BibTeX RDF