Search results for "ChIP-chip"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
24	Hyunmin Kim, Katherina J. Kechris, Lawrence Hunter	Mining Discriminative Distance Context of Transcription Factor Binding Sites on ChIP Enriched Regions.	ISBRA	2007	DBLP DOI BibTeX RDF	ChIP-chip data analysis, ensemble learning, transcription factor
20	George Wu, Jason T. Yustein, Matthew N. McCall, Michael J. Zilliox, Rafael A. Irizarry, Karen Zeller, Chi V. Dang, Hongkai Ji	ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data.	Bioinform.	2013	DBLP DOI BibTeX RDF
20	Juntao Li, Fajrian Yunus, Zhu Lei, Majid Eshaghi, Jianhua Liu, Karuturi R. Krishna Murthy	Modeling and Visualizing Heterogeneity of Spatial Patterns of Protein-DNA Interaction from High-Density Chromatin Precipitation Mapping Data.	ISBRA	2009	DBLP DOI BibTeX RDF	ChIP-chip, DNA-protein Interaction, Microarray
16	Alain B. Tchagang, Ahmed H. Tewfik, Panayiotis V. Benos	Biological evaluation of biclustering algorithms using Gene Ontology and chIP-chip data.	ICASSP	2008	DBLP DOI BibTeX RDF
15	George Wu, Hongkai Ji	ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
15	Xun Lan, Russell Bonneville, Jeff Apostolos, Wangcheng Wu, Victor X. Jin	W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data.	Bioinform.	2011	DBLP DOI BibTeX RDF
15	Li Chen, George Wu, Hongkai Ji	hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.	Bioinform.	2011	DBLP DOI BibTeX RDF
15	Lihua Julie Zhu, Claude Gazin, Nathan D. Lawson, Hervé Pagès, Simon M. Lin, David S. Lapointe, Michael R. Green	ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
15	Frank Johannes, René Wardenaar, Maria Colomé-Tatché, Florence Mousson, Petra de Graaf, Michal Mokry, Victor Guryev, H. Th. Marc Timmers, Edwin Cuppen, Ritsert C. Jansen	Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq.	Bioinform.	2010	DBLP DOI BibTeX RDF
15	Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data.	Bioinform.	2009	DBLP DOI BibTeX RDF
14	Dong He, Dao Zhou, Yanhong Zhou	Identifying synergistic transcriptional factors involved in the yeast cell cycle using Microarray and ChIP-chip data.	GCC Workshops	2006	DBLP DOI BibTeX RDF
10	Ngoc Tu Le, Tu Bao Ho, Bich Hai Ho	Computational Reconstruction of Transcriptional Relationships from ChIP-Chip Data.	IEEE ACM Trans. Comput. Biol. Bioinform.	2013	DBLP DOI BibTeX RDF
10	Caroline Bérard, Michael Seifert, Tristan Mary-Huard, Marie-Laure Martin-Magniette	MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
10	Chun-Hou Zheng 0001, Wen Sha, Zhan-Li Sun, Jun Zhang 0011	Inferring Transcriptional Modules from Microarray and ChIP-Chip Data Using Penalized Matrix Decomposition.	ICIC (2)	2013	DBLP DOI BibTeX RDF
10	Tzu-Hsien Yang, Wei-Sheng Wu	Identifying biologically interpretable transcription factor knockout targets by jointly analyzing the transcription factor knockout microarray and the ChIP-chip data.	BMC Syst. Biol.	2012	DBLP DOI BibTeX RDF
10	Hongkai Ji	Computational Analysis of ChIP-chip Data.	Handbook of Statistical Bioinformatics	2011	DBLP DOI BibTeX RDF
10	Caroline Bérard	Modèles à variables latentes pour des données issues de tiling arrays. Applications aux expériences de ChIP-chip et de transcriptome.		2011	RDF
10	Benedikt Zacher, Pei Fen Kuan, Achim Tresch	Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
10	Shouyong Peng, Mitzi I. Kuroda, Peter J. Park	Quantized correlation coefficient for measuring reproducibility of ChIP-chip data.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
10	Hao Wu 0003, Hongkai Ji	JAMIE: joint analysis of multiple ChIP-chip experiments.	Bioinform.	2010	DBLP DOI BibTeX RDF
10	Ahrim Youn, David J. Reiss, Werner Stuetzle	Learning transcriptional networks from the integration of ChIP-chip and expression data in a non-parametric model.	Bioinform.	2010	DBLP DOI BibTeX RDF
10	Qianxing Mo, Faming Liang	A hidden Ising model for ChIP-chip data analysis.	Bioinform.	2010	DBLP DOI BibTeX RDF
10	Arnaud Droit, Charles Cheung, Raphael Gottardo	rMAT - an R/Bioconductor package for analyzing ChIP-chip experiments.	Bioinform.	2010	DBLP DOI BibTeX RDF
10	Eric Samorodnitsky, B. Franklin Pugh	Genome-Wide Modeling of Transcription Preinitiation Complex Disassembly Mechanisms using ChIP-chip Data.	PLoS Comput. Biol.	2010	DBLP DOI BibTeX RDF
10	Juntao Li, Lei Zhu, Majid Eshaghi, Jianhua Liu, Karuturi R. Krishna Murthy	Deciphering Transcription Factor Binding Patterns from Genome-Wide High Density ChIP-chip Tiling Array Data.	ISBRA	2010	DBLP DOI BibTeX RDF
10	Min-Yu Huang, Gunther H. Weber, Xiaoyong Li, Mark D. Biggin, Bernd Hamann	Quantitative visualization of ChIP-chip data by using linked views.	BIBM Workshops	2010	DBLP DOI BibTeX RDF
10	Debayan Datta, Hongyu Zhao 0003	Effect of false positive and false negative rates on inference of binding target conservation across different conditions and species from ChIP-chip data.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
10	Wei Sun 0006, Michael J. Buck, Mukund Patel, Ian J. Davis	Improved ChIP-chip analysis by a mixture model approach.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
10	Mingqi Wu, Faming Liang, Yanan Tian	Bayesian modeling of ChIP-chip data using latent variables.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
10	Ting Chen, Feng Li	Identifying cell cycle regulators and combinatorial interactions among transcription factors with microarray data and ChIP-chip data.	Int. J. Bioinform. Res. Appl.	2009	DBLP DOI BibTeX RDF
10	Kun He 0012, Xueyong Li, Junli Zhou, Xingwang Deng, Hongyu Zhao, Jingchu Luo	NTAP: for NimbleGen tiling array ChIP-chip data analysis.	Bioinform.	2009	DBLP DOI BibTeX RDF
10	Michael Seifert, Jens Keilwagen, Marc Strickert, Ivo Grosse	Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data.	Bioinform.	2009	DBLP DOI BibTeX RDF
10	Huaxia Qin, Michael W. Y. Chan, Sandya Liyanarachchi, Curtis Balch, Dustin P. Potter, Irene J. Souriraj, Alfred S. L. Cheng, Francisco J. Agosto-Perez, Elena Nikonova, Pearlly Yan, Huey-Jen Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri	An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.	BMC Syst. Biol.	2009	DBLP DOI BibTeX RDF
10	Victor X. Jin, Alina Rabinovich, Henny O'Geen, Sushma Iyengar, Peggy J. Farnham	De novo identification of in vivo binding sites from ChIP-chip data.	BMC Bioinform.	2008	DBLP BibTeX RDF
10	Peter Humburg, David W. Bulger, Glenn Stone	Parameter estimation for robust HMM analysis of ChIP-chip data.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
10	Xin Chen 0037, Lingqiong Guo, Zhaocheng Fan, Tao Jiang 0001	W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data.	Bioinform.	2008	DBLP DOI BibTeX RDF
10	Matteo Cesaroni, Davide Cittaro, Alessandro Brozzi, Pier Giuseppe Pelicci, Lucilla Luzi	CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data.	Bioinform.	2008	DBLP DOI BibTeX RDF
10	Yu Zhang	Poisson approximation for significance in genome-wide ChIP-chip tiling arrays.	Bioinform.	2008	DBLP DOI BibTeX RDF
10	Joern Toedling, Wolfgang Huber	Analyzing ChIP-chip Data Using Bioconductor.	PLoS Comput. Biol.	2008	DBLP DOI BibTeX RDF
10	Pei Fen Kuan, Hyonho Chun, Sündüz Keles	CMARRT: A Tool of Analysis of CHIP-chip Data from Tiling Arrays by Incorporating the Correlation Structure.	Pacific Symposium on Biocomputing	2008	DBLP BibTeX RDF
10	Michael Seifert, Jens Keilwagen, Marc Strickert, Ivo Grosse	Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip Data.	German Conference on Bioinformatics	2008	DBLP BibTeX RDF
10	Marie-Laure Martin-Magniette, Tristan Mary-Huard, Caroline Bérard, Stéphane Robin	ChIPmix: mixture model of regressions for two-color ChIP-chip analysis.	ECCB	2008	DBLP DOI BibTeX RDF
10	Joern Toedling, Oleg Sklyar, Tammo Krueger, Jenny J. Fischer, Silke Sperling, Wolfgang Huber	Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
10	Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen	Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
10	Shouyong Peng, Artyom A. Alekseyenko, Erica Larschan, Mitzi I. Kuroda, Peter J. Park	Normalization and experimental design for ChIP-chip data.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
10	Joern Toedling, Oleg Sklyar, Wolfgang Huber	Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
10	Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan, Bruce J. Aronow, Mario Medvedovic	Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
10	Markus T. Friberg	Prediction of transcription Factor Binding Sites Using CHIP-Chip and Phylogenetic footprinting Data.	J. Bioinform. Comput. Biol.	2007	DBLP DOI BibTeX RDF
10	Hao Sun 0001, Saranyan K. Palaniswamy, Twyla T. Pohar, Victor X. Jin, Tim Hui-Ming Huang, Ramana V. Davuluri	MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.	Nucleic Acids Res.	2006	DBLP DOI BibTeX RDF
10	Jiang Du 0003, Joel S. Rozowsky, Jan O. Korbel, Zhengdong D. Zhang, Thomas E. Royce, Martin H. Schultz, Michael Snyder 0001, Mark Gerstein	A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.	Bioinform.	2006	DBLP DOI BibTeX RDF
10	Saumyadipta Pyne, Bruce Futcher, Steven Skiena	Meta-analysis based on control of false discovery rate: combining yeast ChIP-chip datasets.	Bioinform.	2006	DBLP DOI BibTeX RDF
10	Sündüz Keles, Mark J. van der Laan, Sandrine Dudoit, Simon E. Cawley	Multiple Testing Methods For ChIP - Chip High Density Oligonucleotide Array Data.	J. Comput. Biol.	2006	DBLP DOI BibTeX RDF
10	Pengyu Hong, Xiaole Shirley Liu, Qing Zhou, Xin Lu, Jun S. Liu, Wing Hung Wong	A boosting approach for motif modeling using ChIP-chip data.	Bioinform.	2005	DBLP DOI BibTeX RDF
10	Tijl De Bie, Patrick Monsieurs, Kristof Engelen, Bart De Moor, Nello Cristianini, Kathleen Marchal	Discovering Transcriptional Modules from Motif, Chip-Chip and Microarray Data.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
10	Wei Li 0036, Clifford A. Meyer, Xiaole Shirley Liu	A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.	ISMB (Supplement of Bioinformatics)	2005	DBLP DOI BibTeX RDF
10	Andrew D. Smith, Pavel Sumazin, Debopriya Das, Michael Q. Zhang	Mining ChIP-chip data for transcription factor and cofactor binding sites.	ISMB (Supplement of Bioinformatics)	2005	DBLP DOI BibTeX RDF
10	Greg Hotchkiss, Gonzalo Amador, Darvin Edwards, Paul Hundt, Les Stark, Roger Stierman, Gail Heinen	Wafer level packaging of a tape flip-chip chip scale packages.	Microelectron. Reliab.	2001	DBLP DOI BibTeX RDF
6	Rami Jaschek, Amos Tanay	Spatial Clustering of Multivariate Genomic and Epigenomic Information.	RECOMB	2009	DBLP DOI BibTeX RDF
6	Tho Hoan Pham, Tu Bao Ho, Dang Hung Tran, Kenji Satou	Prediction of Histone Modifications in DNA sequences.	BIBE	2007	DBLP DOI BibTeX RDF
6	Joel S. Rozowsky, Paul Bertone, Thomas E. Royce, Sherman Weissman, Michael Snyder 0001, Mark Gerstein	Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites.	BSB	2005	DBLP DOI BibTeX RDF
6	Linda Dailey Paulson	The Ins and Outs of New Local I/O Trends.	Computer	2003	DBLP DOI BibTeX RDF
4	Yiqiang Chen, Mingqing Hu, Qingsheng Yuan, Junfa Liu	WiFi-Based Power Aware Pervasive Device.	PerCom	2008	DBLP DOI BibTeX RDF	Wi-Fi, Power aware, pervasive device
4	Eilon Sharon, Eran Segal	A Feature-Based Approach to Modeling Protein-DNA Interactions.	RECOMB	2007	DBLP DOI BibTeX RDF	DNA sequence motifs, motif finder, probabilistic graphical models, Markov networks, transcription factor binding sites
4	Leelavati Narlikar, Raluca Gordân, Alexander J. Hartemink	Nucleosome Occupancy Information Improves de novo Motif Discovery.	RECOMB	2007	DBLP DOI BibTeX RDF
4	Antonio Flores, Juan L. Aragón, Manuel E. Acacio	Sim-PowerCMP: A Detailed Simulator for Energy Consumption Analysis in Future Embedded CMP Architectures.	AINA Workshops (1)	2007	DBLP DOI BibTeX RDF
4	Mario Donato Marino	32-core CMP with multi-sliced L2: 2 and 4 cores sharing a L2 slice.	SBAC-PAD	2006	DBLP DOI BibTeX RDF
4	Mario Donato Marino	L2-Cache Hierarchical Organizations for Multi-core Architectures.	ISPA Workshops	2006	DBLP DOI BibTeX RDF
4	Guandong Wang, Weixiong Zhang	Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
4	Matthew T. Weirauch, Joshua M. Stuart	Discovering Functional Transcription Factor Binding from Superimposed Gene Networks.	CSB Workshops	2005	DBLP DOI BibTeX RDF