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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 23 occurrences of 16 keywords
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Results
Found 42 publication records. Showing 42 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
214 | Kridsadakorn Chaichoompu, Surin Kittitornkun, Sissades Tongsima |
MT-ClustalW: multithreading multiple sequence alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), Proceedings, 25-29 April 2006, Rhodes Island, Greece, 2006, IEEE. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
141 | Siamak Rezaei, Md. Maruf Monwar |
Divide-and-Conquer Algorithm for Clustalw-MPI. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CCECE ![In: Proceedings of the Canadian Conference on Electrical and Computer Engineering, CCECE 2006, May 7-10, 2006, Ottawa Congress Centre, Ottawa, Canada, pp. 717-720, 2006, IEEE, 1-4244-0038-4. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
91 | Yongchao Liu, Bertil Schmidt, Douglas L. Maskell |
MSA-CUDA: Multiple Sequence Alignment on Graphics Processing Units with CUDA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ASAP ![In: 20th IEEE International Conference on Application-Specific Systems, Architectures and Processors, ASAP 2009, July 7-9, 2009, Boston, MA, USA, pp. 121-128, 2009, IEEE Computer Society, 978-0-7695-3732-0. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
81 | Yan Lin Aung, Douglas L. Maskell, Timothy F. Oliver, Bertil Schmidt, William Bong |
C-Based Design Methodology for FPGA Implementation of ClustalW MSA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PRIB ![In: Pattern Recognition in Bioinformatics, Second IAPR International Workshop, PRIB 2007, Singapore, October 1-2, 2007, Proceedings, pp. 11-18, 2007, Springer, 978-3-540-75285-1. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
ClustalW, FPGA, multiple sequence alignment, sequence analysis |
73 | Kevin Liu, Serita M. Nelesen, Sindhu Raghavan, C. Randal Linder, Tandy J. Warnow |
Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 6(1), pp. 7-21, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
Markov processes, Biology and genetics |
68 | Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang Müller-Wittig |
GPU-ClustalW: Using Graphics Hardware to Accelerate Multiple Sequence Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
HiPC ![In: High Performance Computing - HiPC 2006, 13th International Conference, Bangalore, India, December 18-21, 2006, Proceedings, pp. 363-374, 2006, Springer, 3-540-68039-X. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
64 | Kuo-Bin Li |
ClustalW-MPI: ClustalW analysis using distributed and parallel computing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 19(12), pp. 1585-1586, 2003. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
|
55 | Yongchao Liu, Bertil Schmidt, Douglas L. Maskell |
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 23rd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2009, Rome, Italy, May 23-29, 2009, pp. 1-8, 2009, IEEE. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
55 | Carlos Raimundo Erig Lima, Heitor S. Lopes, Maiko R. Moroz, Ramon M. Menezes |
Multiple Sequence Alignment Using Reconfigurable Computing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ARC ![In: Reconfigurable Computing: Architectures, Tools and Applications, Third International Workshop, ARC 2007, Mangaratiba, Brazil, March 27-29, 2007., pp. 379-384, 2007, Springer, 978-3-540-71430-9. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
50 | Hyon Chang Kim, Yong Beom Seo, Ji Hwan Song, Dong Soon Choi, Churl K. Min, Han Jip Kim |
Massive Multiple Sequence Alignment of 16S Bacterial Ribosomal RNAs Using ClustalW-Message Passing Interface (MPI) Based on Beowulf Linux System. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB Workshops ![In: Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, CSB 2005 Workshops, Stanford, CA, USA, August 8-11, 2005, pp. 241-242, 2005, IEEE Computer Society, 0-7695-2442-7. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
ClustalWMPI, 16S ribosomal RNA, ribosomal antibiotics, multiple sequence alignment |
36 | Ankit Agrawal 0001, S. K. Khaitan |
A new heuristic for multiple sequence alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
EIT ![In: 2008 IEEE International Conference on Electro/Information Technology, EIT 2008, held at Iowa State University, Ames, Iowa, USA, May 18-20, 2008, pp. 215-217, 2008, IEEE, 978-1-4244-2030-8. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
36 | Guangming Tan, Liu Peng, Shengzhong Feng, Ninghui Sun |
Load Balancing and Parallel Multiple Sequence Alignment with Tree Accumulation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Euro-Par ![In: Euro-Par 2006, Parallel Processing, 12th International Euro-Par Conference, Dresden, Germany, August 28 - September 1, 2006, Proceedings, pp. 1138-1147, 2006, Springer, 3-540-37783-2. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
36 | Yiming Li 0005, Cheng-Kai Chen |
Parallelization of Multiple Genome Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
HPCC ![In: High Performance Computing and Communications, First International Conference, HPCC 2005, Sorrento, Italy, September 21-23, 2005, Proceedings, pp. 910-915, 2005, Springer, 3-540-29031-1. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
36 | Jiancong Luo, Ishfaq Ahmad, Munib Ahmed, Raymond A. Paul |
Parallel Multiple Sequence Alignment with Dynamic Scheduling. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ITCC (1) ![In: International Symposium on Information Technology: Coding and Computing (ITCC 2005), Volume 1, 4-6 April 2005, Las Vegas, Nevada, USA, pp. 8-13, 2005, IEEE Computer Society, 0-7695-2315-3. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
task tree, progressive alignment, parallel computing, dynamic scheduling, multiple sequence alignment |
32 | Sangwu Lim, Taeseon Yoon |
Genomic Comparison of Four Metapneumovirus Strains Using Decision Tree, Apriori Algorithm, ClustalW, and Phylogenetic Reconstruction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICBRA ![In: Proceedings of the 2018 5th International Conference on Bioinformatics Research and Applications, ICBRA '18, Hong Kong, SAR, China, December 27-29, 2018, pp. 95-100, 2018, ACM, 978-1-4503-6611-3. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
32 | Che-Lun Hung, Yu-Shiang Lin, Chun-Yuan Lin, Yeh-Ching Chung, Yi-Fang Chung |
CUDA ClustalW: An efficient parallel algorithm for progressive multiple sequence alignment on Multi-GPUs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Biol. Chem. ![In: Comput. Biol. Chem. 58, pp. 62-68, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
32 | Atabak Mahram, Martin C. Herbordt |
FMSA: FPGA-Accelerated ClustalW-Based Multiple Sequence Alignment through Pipelined Prefiltering. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FCCM ![In: 2012 IEEE 20th Annual International Symposium on Field-Programmable Custom Computing Machines, FCCM 2012, 29 April - 1 May 2012, Toronto, Ontario, Canada, pp. 177-183, 2012, IEEE Computer Society, 978-0-7695-4699-5. The full citation details ...](Pics/full.jpeg) |
2012 |
DBLP DOI BibTeX RDF |
|
32 | Vipin Sachdeva, Michael Kistler, David A. Bader |
Evaluating Cell/B.E software cache for ClustalW. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISCAS ![In: International Symposium on Circuits and Systems (ISCAS 2010), May 30 - June 2, 2010, Paris, France, pp. 3793-3796, 2010, IEEE, 978-1-4244-5308-5. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
32 | Ryan Potter |
Constructing More Accurate Phylogenetic Trees for Highly Divergent Sequences using ClustalW. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICDM (Posters and Workshops) ![In: Advances in Data Mining. 8th Industrial Conference, ICDM 2008, Leipzig, Germany, July 2008, Poster and Workshop Proceedings, pp. 116-127, 2008, ibai Publishing, 978-3-940501-03-5. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP BibTeX RDF |
|
32 | Avinash Shankaranarayanan, Christine Amaldas |
A Computational Framework for Performance Optimization of Bioinformatics ClustalW. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIOCOMP ![In: International Conference on Bioinformatics & Computational Biology, BIOCOMP 2008, July 14-17, 2008, Las Vegas Nevada, USA, 2 Volumes, pp. 875-881, 2008, CSREA Press, 1-60132-055-8. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP BibTeX RDF |
|
32 | Zhihua Du, Feng Lin |
pNJTree: A parallel program for reconstruction of neighbor-joining tree and its application in ClustalW. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Parallel Comput. ![In: Parallel Comput. 32(5-6), pp. 441-446, 2006. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
32 | Timothy F. Oliver, Bertil Schmidt, Darran Nathan, Ralf Clemens, Douglas L. Maskell |
Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 21(16), pp. 3431-3432, 2005. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
32 | Davinder K. Kohli, Anand K. Bachhawat |
CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 31(13), pp. 3501-3502, 2003. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
|
31 | Sebastián Isaza, Friman Sánchez, Georgi Gaydadjiev, Alex Ramírez, Mateo Valero |
Scalability Analysis of Progressive Alignment on a Multicore. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CISIS ![In: CISIS 2010, The Fourth International Conference on Complex, Intelligent and Software Intensive Systems, Krakow, Poland, 15-18 February 2010, pp. 889-894, 2010, IEEE Computer Society, 978-0-7695-3967-6. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
clustalw, bioinformatics, multicore, multiple sequence alignment, cell |
31 | Çaglar Yilmaz, Mustafa Gök |
An Optimized System for Multiple Sequence Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ReConFig ![In: ReConFig'09: 2009 International Conference on Reconfigurable Computing and FPGAs, Cancun, Quintana Roo, Mexico, 9-11 December 2009, Proceedings, pp. 178-182, 2009, IEEE Computer Society, 978-0-7695-3917-1. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
ClustalW, Hardware, Multiple Sequence Alignment |
18 | Sebastián Isaza, Friman Sánchez, Georgi Gaydadjiev, Alex Ramírez, Mateo Valero |
Preliminary Analysis of the Cell BE Processor Limitations for Sequence Alignment Applications. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SAMOS ![In: Embedded Computer Systems: Architectures, Modeling, and Simulation, 8th International Workshop, SAMOS 2008, Samos, Greece, July 21-24, 2008. Proceedings, pp. 53-64, 2008, Springer, 978-3-540-70549-9. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
18 | Xiaoyong Fang, Zhenghua Wang, Zhigang Luo, Bo Yuan, Fan Ding |
The detection and assessment of possible RNA secondary structure using multiple sequence alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SAC ![In: Proceedings of the 2007 ACM Symposium on Applied Computing (SAC), Seoul, Korea, March 11-15, 2007, pp. 133-137, 2007, ACM, 1-59593-480-4. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
multiple sequence alignment, RNA secondary structure, non-coding RNA |
18 | Vipin Sachdeva, Michael Kistler, William Evan Speight, Tzy-Hwa Kathy Tzeng |
Exploring the Viability of the Cell Broadband Engine for Bioinformatics Applications. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA, pp. 1-8, 2007, IEEE. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
18 | Feng Yue, Jijun Tang |
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBM ![In: Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2007, Silicon Valley, CA, USA, November 2-4, 2007, pp. 143-150, 2007, IEEE Computer Society, 0-7695-3031-1. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
18 | Vincenzo Cutello, D. Lee, Giuseppe Nicosia, Mario Pavone, I. Prizzi |
Aligning Multiple Protein Sequences by Hybrid Clonal Selection Algorithm with Insert-Remove-Gaps and BlockShuffling Operators. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICARIS ![In: Artificial Immune Systems, 5th International Conference, ICARIS 2006, Oeiras, Portugal, September 4-6, 2006, Proceedings, pp. 321-334, 2006, Springer, 3-540-37749-2. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
hypermutation operator, bioinformatics, multiple sequence alignment, immune algorithms, clonal selection algorithms, protein sequences |
18 | Xi Deng, Eric Li, Jiulong Shan, Wenguang Chen |
Parallel implementation and performance characterization of MUSCLE. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), Proceedings, 25-29 April 2006, Rhodes Island, Greece, 2006, IEEE. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
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18 | Hongwei Huo, Vojislav Stojkovic, Zhiwei Xiao |
A Maximum Weighted Path Approach to Multiple Alignments for DNA Sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICNC (2) ![In: Advances in Natural Computation, Second International Conference, ICNC 2006, Xi'an, China, September 24-28, 2006. Proceedings, Part II, pp. 336-339, 2006, Springer, 3-540-45907-3. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
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18 | Vipin Sachdeva, Michael Kistler, Evan Speight |
Poster reception - Pairwise alignments on the cell processor. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SC ![In: Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, November 11-17, 2006, Tampa, FL, USA, pp. 171, 2006, ACM Press, 0-7695-2700-0. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
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18 | Erik Pitzer |
Parallel Progressive Multiple Sequence Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
EUROCAST ![In: Computer Aided Systems Theory - EUROCAST 2005, 10th International Conference on Computer Aided Systems Theory, Las Palmas de Gran Canaria, Spain, February 7-11, 2005, Revised Selected Papers, pp. 473-482, 2005, Springer, 3-540-29002-8. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
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18 | Markus Bauer 0001, Gunnar W. Klau, Knut Reinert |
Multiple Structural RNA Alignment with Lagrangian Relaxation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings, pp. 303-314, 2005, Springer, 3-540-29008-7. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
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18 | Walter L. Ruzzo |
Searching for Non-coding RNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BSB ![In: Advances in Bioinformatics and Computational Biology, Brazilian Symposium on Bioinformatics, BSB 2005, Sao Leopoldo, Brazil, July 27-29, 2005, Proceedings, pp. 9-10, 2005, Springer, 3-540-28008-1. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
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18 | René Thomsen, Wouter Boomsma |
Multiple Sequence Alignment Using SAGA: Investigating the Effects of Operator Scheduling, Population Seeding, and Crossover Operators. ![Search on Bibsonomy](Pics/bibsonomy.png) |
EvoWorkshops ![In: Applications of Evolutionary Computing, EvoWorkshops 2004: EvoBIO, EvoCOMNET, EvoHOT, EvoIASP, EvoMUSART, and EvoSTOC, Coimbra, Portugal, April 5-7, 2004, Proceedings, pp. 113-122, 2004, Springer, 3-540-21378-3. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
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18 | Robert C. Edgar |
MUSCLE: Multiple Sequence Alignment with Improved Accuracy and Speed. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB ![In: 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2004, Stanford, CA, USA, August 16-19, 2004, pp. 728-729, 2004, IEEE Computer Society, 0-7695-2194-0. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
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18 | Mathieu Blanchette, Samson Kwong, Martin Tompa |
An Empirical Comparison of Tools for Phylogenetic Footprinting. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: 3rd IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2003), 10-12 March 2003, Bethesda, MD, USA, pp. 69-78, 2003, IEEE Computer Society, 0-7695-1907-5. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
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18 | Gareth Hannaford, Carsten Maple |
Determining Candidate Binding Site Locations Using Conserved Features. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IV ![In: Seventh International Conference on Information Visualization, IV 2003, 16-18 July 2003, London, UK, pp. 152-157, 2003, IEEE Computer Society, 0-7695-1988-1. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
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18 | Saumil Mehta, Deendayal Dinakarpandian |
ConsDiff: Identification of Conserved Differences between Sets of Amino Acid Sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
DEXA Workshops ![In: 14th International Workshop on Database and Expert Systems Applications (DEXA'03), September 1-5, 2003, Prague, Czech Republic, pp. 21-24, 2003, IEEE Computer Society, 0-7695-1993-8. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
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18 | L. A. Anbarasu, P. Narayanasamy, V. Sundararajan |
Multiple Sequence Alignment Using Parallel Genetic Algorithms. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SEAL ![In: Simulated Evolution and Learning, Second Asia-Pacific Conference on Simulated Evolution and Learning, SEAL'98, Canberra, Australia, November 24-27 1998, Selected Papers, pp. 130-137, 1998, Springer, 3-540-65907-2. The full citation details ...](Pics/full.jpeg) |
1998 |
DBLP DOI BibTeX RDF |
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