Search results for "Coarse-graining"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
153	Markos A. Katsoulakis, Petr Plechác, Luc Rey-Bellet	Numerical and Statistical Methods for the Coarse-Graining of Many-Particle Stochastic Systems.	J. Sci. Comput.	2008	DBLP DOI BibTeX RDF	Lattice spin systems, Polymeric systems, Gibbs measure, Cluster expansion, Multi-body interactions, Renormalization group map, A posteriori error analysis, Adaptivity, Monte Carlo method, Importance sampling, Relative entropy, Coarse-graining
128	Keki M. Burjorjee, Jordan B. Pollack	A general coarse-graining framework for studying simultaneous inter-population constraints induced by evolutionary operations.	GECCO	2006	DBLP DOI BibTeX RDF	genetic algorithms, constraints, schema theory, coarse-graining
118	Jonathan E. Rowe, Michael D. Vose, Alden H. Wright	Coarse Graining Selection and Mutation.	FOGA	2005	DBLP DOI BibTeX RDF
70	Boris Mitavskiy, Jonathan E. Rowe, Alden H. Wright, Lothar M. Schmitt	Quotients of Markov chains and asymptotic properties of the stationary distribution of the Markov chain associated to an evolutionary algorithm.	Genet. Program. Evolvable Mach.	2008	DBLP DOI BibTeX RDF	Uniform population, Evolutionary algorithm, Markov chain, Stationary distribution, Selection pressure, Asymptotics, Coarse graining, Quotient, Mutation rate
64	Massimo Maiolo, Alberto Vancheri, Rolf Krause, Andrea Danani	Wavelets as basis functions to represent the coarse-graining potential in multiscale coarse graining approach.	J. Comput. Phys.	2015	DBLP DOI BibTeX RDF
62	Andrés Aguilar Contreras, Jonathan E. Rowe, Christopher R. Stephens	Coarse-Graining in Genetic Algorithms: Some Issues and Examples.	GECCO	2003	DBLP DOI BibTeX RDF
57	Andrew Weeks, Susan Stepney, Fiona Polack	Neutral Emergence and Coarse Graining.	ECAL	2007	DBLP DOI BibTeX RDF
57	Mikael Lund	Coarse Graining Biomolecular Systems.	PARA	2006	DBLP DOI BibTeX RDF
54	Lirong Cui, Xiangchen Li, Narayanaswamy Balakrishnan 0001	On Uncertainty of Dynamic Systems via State Aggregation Coarse-Graining and State Decomposition Fine-Graining Ways.	CoRR	2022	DBLP DOI BibTeX RDF
50	R. A. Brownlee, Alexander N. Gorban, Jeremy Levesley	Stable simulation of fluid flow with high-Reynolds number using Ehrenfests' steps.	Numer. Algorithms	2007	DBLP DOI BibTeX RDF	Ehrenfests’ steps, Numerical stabilisation, Navier-Stokes equations
32	Bastian Hilder, Upanshu Sharma	Quantitative Coarse-Graining of Markov Chains.	SIAM J. Math. Anal.	2024	DBLP DOI BibTeX RDF
32	Roberto Alicandro, Lucia De Luca, Giuliano Lazzaroni, Mariapia Palombaro, Marcello Ponsiglione	Coarse-Graining of a Discrete Model for Edge Dislocations in the Regular Triangular Lattice.	J. Nonlinear Sci.	2023	DBLP DOI BibTeX RDF
32	Eric Fagerberg, Marie Skepö	Comparative Performance of Computer Simulation Models of Intrinsically Disordered Proteins at Different Levels of Coarse-Graining.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
32	Steffen Wolf	Predicting Protein-Ligand Binding and Unbinding Kinetics with Biased MD Simulations and Coarse-Graining of Dynamics: Current State and Challenges.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
32	H. Eshraghi, Ehsan Amani, M. Saffar-Avval	Coarse-graining algorithms for the Eulerian-Lagrangian simulation of particle-laden flows.	J. Comput. Phys.	2023	DBLP DOI BibTeX RDF
32	Benjamin A. Storer, Hussein Aluie	FlowSieve: A Coarse-Graining Utility for Geophysical Flows on the Sphere.	J. Open Source Softw.	2023	DBLP DOI BibTeX RDF
32	Allan dos Santos Costa, Ilan Mitnikov, Mario Geiger, Manvitha Ponnapati, Tess E. Smidt, Joseph Jacobson	Ophiuchus: Scalable Modeling of Protein Structures through Hierarchical Coarse-graining SO(3)-Equivariant Autoencoders.	CoRR	2023	DBLP DOI BibTeX RDF
32	Daniele Toller, Mirco Tribastone, Max Tschaikowski, Andrea Vandin	Coarse-graining Complex Networks for Control Equivalence.	CoRR	2023	DBLP DOI BibTeX RDF
32	Georgia Baxevani, Vagelis Harmandaris, Evangelia Kalligiannaki, Ivi Tsantili	Bottom-up transient time models in coarse-graining molecular systems.	CoRR	2023	DBLP DOI BibTeX RDF
32	Daniel A. Messenger, Joshua W. Burby, David M. Bortz	Coarse-Graining Hamiltonian Systems Using WSINDy.	CoRR	2023	DBLP DOI BibTeX RDF
32	Jun Zhang, Xiaohan Lin, Weinan E, Yi Qin Gao	Machine-Learned Invertible Coarse Graining for Multiscale Molecular Modeling.	CoRR	2023	DBLP DOI BibTeX RDF
32	Huaiqian You, Xiao Xu, Yue Yu, Stewart Silling, Marta D'Elia, John T. Foster	Towards a unified nonlocal, peridynamics framework for the coarse-graining of molecular dynamics data with fractures.	CoRR	2023	DBLP DOI BibTeX RDF
32	Sebastian Peitz, Hans Harder, Feliks Nüske, Friedrich Philipp, Manuel Schaller, Karl Worthmann	Partial observations, coarse graining and equivariance in Koopman operator theory for large-scale dynamical systems.	CoRR	2023	DBLP DOI BibTeX RDF
32	Georgia Baxevani, Vagelis Harmandaris, Evangelia Kalligiannaki, Ivi Tsantili	Bottom-Up Transient Time Models in Coarse-Graining Molecular Systems.	Multiscale Model. Simul.	2023	DBLP DOI BibTeX RDF
32	Jakub Lála, Stefano Angiolleti-Uberti	Coarse-Graining of Molecular Dynamics Using Neural Ordinary Differential Equations.	EUROCON	2023	DBLP DOI BibTeX RDF
32	Ambuj Kumar, Pranav M. Khade, Karin S. Dorman, Robert L. Jernigan	Coarse-graining protein structures into their dynamic communities with DCI, a dynamic community identifier.	Bioinform.	2022	DBLP DOI BibTeX RDF
32	Wujie Wang, Minkai Xu, Chen Cai, Benjamin Kurt Miller, Tess E. Smidt, Yusu Wang 0001, Jian Tang 0005, Rafael Gómez-Bombarelli	Generative Coarse-Graining of Molecular Conformations.	CoRR	2022	DBLP BibTeX RDF
32	Jonas Köhler 0001, Yaoyi Chen, Andreas Krämer, Cecilia Clementi, Frank Noé	Force-matching Coarse-Graining without Forces.	CoRR	2022	DBLP DOI BibTeX RDF
32	Daniyar Kazidenov, Furkhat Khamitov, Yerlan Amanbek	Coarse-graining of CFD-DEM for simulation of sand production in the modified cohesive contact model.	CoRR	2022	DBLP DOI BibTeX RDF
32	Christopher Tyler Diggans, Abd AlRahman R. AlMomani	Geometric Partition Entropy: Coarse-Graining a Continuous State Space.	Entropy	2022	DBLP DOI BibTeX RDF
32	Léo Bulckaen, Nilankur Dutta, Alexandre Nicolas	Parking Search in Urban Street Networks: Taming Down the Complexity of the Search-Time Problem via a Coarse-Graining Approach.	PPAM (2)	2022	DBLP DOI BibTeX RDF
32	Wujie Wang, Minkai Xu, Chen Cai, Benjamin Kurt Miller, Tess E. Smidt, Yusu Wang 0001, Jian Tang 0005, Rafael Gómez-Bombarelli	Generative Coarse-Graining of Molecular Conformations.	ICML	2022	DBLP BibTeX RDF
32	Guiyu Cao, Liang Pan, Kun Xu 0001	Three dimensional high-order gas-kinetic scheme for supersonic isotropic turbulence II: Coarse-graining analysis of compressible Ksgs budget.	J. Comput. Phys.	2021	DBLP DOI BibTeX RDF
32	Thomas J. Elliott	Quantum coarse-graining for extreme dimension reduction in modelling stochastic temporal dynamics.	CoRR	2021	DBLP BibTeX RDF
32	Stuart Patching	On Divergence- and Gradient-Preserving Coarse-Graining for Finite Volume Primitive Equation Ocean Models.	CoRR	2021	DBLP BibTeX RDF
32	Markus Schöberl	Probabilistic Machine Learning Strategies for Coarse-Graining of Molecular Dynamics at Equilibrium (Probabilistische Strategien des maschinellen Lernens zur Multiskalenmodellierung atomistischer Systeme) (PDF / PS)		2021	RDF
32	Yuri S. Nagornov, Ryosuke Akashi	AtomREM: Non-empirical seeker of the minimum energy escape paths on many-dimensional potential landscapes without coarse graining.	Comput. Phys. Commun.	2020	DBLP DOI BibTeX RDF
32	Chongzhi Zang, Yiren Wang, Weiqun Peng	RECOGNICER: A coarse-graining approach for identifying broad domains from ChIP-seq data.	Quant. Biol.	2020	DBLP DOI BibTeX RDF
32	Carsten Hartmann, Lara Neureither, Upanshu Sharma	Coarse Graining of Nonreversible Stochastic Differential Equations: Quantitative Results and Connections to Averaging.	SIAM J. Math. Anal.	2020	DBLP DOI BibTeX RDF
32	Sebastian Kaltenbach, Phaedon-Stelios Koutsourelakis	Incorporating physical constraints in a deep probabilistic machine learning framework for coarse-graining dynamical systems.	J. Comput. Phys.	2020	DBLP DOI BibTeX RDF
32	Pedro C. S. Costa, Fernando de Melo	Coarse Graining of Partitioned Cellular Automata.	J. Cell. Autom.	2020	DBLP BibTeX RDF
32	Markus Schöberl, Nicholas Zabaras, Phaedon-Stelios Koutsourelakis	Embedded-physics machine learning for coarse-graining and collective variable discovery without data.	CoRR	2020	DBLP BibTeX RDF
32	O. Duranthon, Giuseppe Di Molfetta	Goldilock rules, Quantum cellular automata and coarse-graining.	CoRR	2020	DBLP BibTeX RDF
32	Yerim Song, Joshua A. Grochow	An Improved Algorithm for Coarse-Graining Cellular Automata.	CoRR	2020	DBLP BibTeX RDF
32	Thomas Hudson, Xingjie H. Li	Coarse-Graining of Overdamped Langevin Dynamics via the Mori-Zwanzig Formalism.	Multiscale Model. Simul.	2020	DBLP DOI BibTeX RDF
32	Gernot Schaller, Julian Ablaßmayer	Thermodynamics of the Coarse-Graining Master Equation.	Entropy	2020	DBLP DOI BibTeX RDF
32	Lukas Hörmann, Andreas Jeindl, Alexander T. Egger, Michael Scherbela, Oliver T. Hofmann	SAMPLE: Surface structure search enabled by coarse graining and statistical learning.	Comput. Phys. Commun.	2019	DBLP DOI BibTeX RDF
32	Alexander Mirzoev, Lars Nordenskiöld, Alexander Lyubartsev	Magic v.3: An integrated software package for systematic structure-based coarse-graining.	Comput. Phys. Commun.	2019	DBLP DOI BibTeX RDF
32	Jiwei Zhang 0002, Yuxiu Shao, Aaditya V. Rangan, Louis Tao	A coarse-graining framework for spiking neuronal networks: from strongly-coupled conductance-based integrate-and-fire neurons to augmented systems of ODEs.	J. Comput. Neurosci.	2019	DBLP DOI BibTeX RDF
32	Constantin Grigo, Phaedon-Stelios Koutsourelakis	A physics-aware, probabilistic machine learning framework for coarse-graining high-dimensional systems in the Small Data regime.	J. Comput. Phys.	2019	DBLP DOI BibTeX RDF
32	Lina Ma, Xiantao Li, Chun Liu 0009	Coarse-graining Langevin dynamics using reduced-order techniques.	J. Comput. Phys.	2019	DBLP DOI BibTeX RDF
32	Nathan Brugnone, Alex Gonopolskiy, Mark W. Moyle, Manik Kuchroo, David van Dijk, Kevin R. Moon, Daniel Colón-Ramos, Guy Wolf, Matthew J. Hirn, Smita Krishnaswamy	Coarse Graining of Data via Inhomogeneous Diffusion Condensation.	CoRR	2019	DBLP BibTeX RDF
32	Constantin Grigo, Phaedon-Stelios Koutsourelakis	A physics-aware, probabilistic machine learning framework for coarse-graining high-dimensional systems in the Small Data regime.	CoRR	2019	DBLP BibTeX RDF
32	Nathan Brugnone, Smita Krishnaswamy, Alex Gonopolskiy, Mark W. Moyle, Manik Kuchroo, David van Dijk, Kevin R. Moon, Daniel Colón-Ramos, Guy Wolf, Matthew J. Hirn	Coarse Graining of Data via Inhomogeneous Diffusion Condensation.	IEEE BigData	2019	DBLP DOI BibTeX RDF
32	Chunyan Mu, Peter Dittrich, David Parker 0001, Jonathan E. Rowe	Organisation-Oriented Coarse Graining and Refinement of Stochastic Reaction Networks.	IEEE ACM Trans. Comput. Biol. Bioinform.	2018	DBLP DOI BibTeX RDF
32	Mauro Faccin, Michael T. Schaub, Jean-Charles Delvenne	Entrograms and coarse graining of dynamics on complex networks.	J. Complex Networks	2018	DBLP DOI BibTeX RDF
32	Wujie Wang, Rafael Gómez-Bombarelli	Variational Coarse-Graining for Molecular Dynamics.	CoRR	2018	DBLP BibTeX RDF
32	Stephen Whitelam	Simple coarse graining and sampling strategies for image recognition.	CoRR	2018	DBLP BibTeX RDF
32	Fernando C. Pérez-Cárdenas, Lorenzo Resca, Ian L. Pegg	Coarse Graining, Nonmaximal Entropy, and Power Laws.	Entropy	2018	DBLP DOI BibTeX RDF
32	Hamed Azami, Javier Escudero	Coarse-Graining Approaches in Univariate Multiscale Sample and Dispersion Entropy.	Entropy	2018	DBLP DOI BibTeX RDF
32	Markus Schöberl, Nicholas Zabaras, Phaedon-Stelios Koutsourelakis	Predictive coarse-graining.	J. Comput. Phys.	2017	DBLP DOI BibTeX RDF
32	Roberto de la Cruz, Pilar Guerrero, Juan Calvo, Tomás Alarcón	Coarse-graining and hybrid methods for efficient simulation of stochastic multi-scale models of tumour growth.	J. Comput. Phys.	2017	DBLP DOI BibTeX RDF
32	Animesh Agarwal, Brooks D. Rabideau, Ahmed E. Ismail	Multiresolution Modeling of Semidilute Polymer Solutions: Coarse-Graining Using Wavelet-Accelerated Monte Carlo.	Comput.	2017	DBLP DOI BibTeX RDF
32	Johannes Rauh, Pradeep Kr. Banerjee, Eckehard Olbrich, Jürgen Jost, Nils Bertschinger, David H. Wolpert	Coarse-graining and the Blackwell order.	CoRR	2017	DBLP BibTeX RDF
32	Mauro Faccin, Michael T. Schaub, Jean-Charles Delvenne	Entrograms and coarse graining of dynamics on complex networks.	CoRR	2017	DBLP BibTeX RDF
32	Johannes Rauh, Pradeep Kr. Banerjee, Eckehard Olbrich, Jürgen Jost, Nils Bertschinger, David H. Wolpert	Coarse-Graining and the Blackwell Order.	Entropy	2017	DBLP DOI BibTeX RDF
32	Ana Alonso-Serrano, Matt Visser	Coarse Graining Shannon and von Neumann Entropies.	Entropy	2017	DBLP DOI BibTeX RDF
32	Wenbin Shi, Pengjian Shang, Yan Ma, Shuchen Sun, Chien-Hung Yeh	A comparison study on stages of sleep: Quantifying multiscale complexity using higher moments on coarse-graining.	Commun. Nonlinear Sci. Numer. Simul.	2017	DBLP DOI BibTeX RDF
32	Aharon Ben-Tal, Ioannis G. Kevrekidis	Coarse-Graining and Simplification of the Dynamics Seen in Bursting Neurons.	SIAM J. Appl. Dyn. Syst.	2016	DBLP DOI BibTeX RDF
32	Flaviu S. Cipcigan, Vlad P. Sokhan, Jason Crain, Glenn J. Martyna	Electronic coarse graining enhances the predictive power of molecular simulation allowing challenges in water physics to be addressed.	J. Comput. Phys.	2016	DBLP DOI BibTeX RDF
32	Slavica Jonic, Carlos Oscar Sánchez Sorzano	Coarse-Graining of Volumes for Modeling of Structure and Dynamics in Electron Microscopy: Algorithm to Automatically Control Accuracy of Approximation.	IEEE J. Sel. Top. Signal Process.	2016	DBLP DOI BibTeX RDF
32	Nicholas Guttenberg, Martin Biehl 0001, Ryota Kanai	Neural Coarse-Graining: Extracting slowly-varying latent degrees of freedom with neural networks.	CoRR	2016	DBLP BibTeX RDF
32	Yao Sun, Wei Wei, Zhizeng Luo, Zhongming Ji	Neighborhood coarse graining based Lempel-Ziv complexity for analysis on center of pressure.	BioCAS	2016	DBLP DOI BibTeX RDF
32	Stas Bevc, Christoph Junghans, Matej Praprotnik	STOCK: Structure mapper and online coarse-graining kit for molecular simulations.	J. Comput. Chem.	2015	DBLP DOI BibTeX RDF
32	Andrew Binder, Mitchell Luskin, Danny Perez, Arthur F. Voter	Analysis of Transition State Theory Rates upon Spatial Coarse-Graining.	Multiscale Model. Simul.	2015	DBLP DOI BibTeX RDF
32	Kristian Lindgren	An Information-Theoretic Perspective on Coarse-Graining, Including the Transition from Micro to Macro.	Entropy	2015	DBLP DOI BibTeX RDF
32	Nikos Kalogeropoulos	Entropies from Coarse-graining: Convex Polytopes vs. Ellipsoids.	Entropy	2015	DBLP DOI BibTeX RDF
32	Dirk Cysarz, Friedrich Edelhäuser, Michal Javorka, Nicola Montano, Alberto Porta	A percentile-based coarse graining approach is helpful in symbolizing heart rate variability during graded head-up tilt.	EMBC	2015	DBLP DOI BibTeX RDF
32	Deling Xia, Qingfang Meng, Yuehui Chen, Zaiguo Zhang	A Multi-valued Coarse Graining of Lempel-Ziv Complexity and SVM in ECG Signal Analysis.	ICIC (1)	2015	DBLP DOI BibTeX RDF
32	Alexander Mirzoev, Alexander Lyubartsev	Systematic implicit solvent coarse graining of dimyristoylphosphatidylcholine lipids.	J. Comput. Chem.	2014	DBLP DOI BibTeX RDF
32	Takeshi Matsuoka, Shigenori Tanaka, Kuniyoshi Ebina	Hierarchical coarse-graining model for photosystem II including electron and excitation-energy transfer processes.	Biosyst.	2014	DBLP DOI BibTeX RDF
32	Ali Ghaderi	On Coarse Graining of Information and Its Application to Pattern Recognition.	CoRR	2014	DBLP BibTeX RDF
32	Markos A. Katsoulakis, Petr Plechác, Luc Rey-Bellet, Dimitrios K. Tsagkarogiannis	Coarse-graining schemes for stochastic lattice systems with short and long-range interactions.	Math. Comput.	2014	DBLP DOI BibTeX RDF
32	Frédéric Cazals, Tom Dreyfus, Sushant Sachdeva, N. Shah	Greedy Geometric Algorithms for Collection of Balls, with Applications to Geometric Approximation and Molecular Coarse-Graining.	Comput. Graph. Forum	2014	DBLP DOI BibTeX RDF
32	Krzysztof Magiera, Witold Dzwinel	A Novel Algorithm for Coarse-Graining of Cellular Automata.	ACRI	2014	DBLP DOI BibTeX RDF
32	Takashi Ichinomiya	Temporal coarse-graining method to simulate the movement of atoms.	J. Comput. Phys.	2013	DBLP DOI BibTeX RDF
32	Markos A. Katsoulakis, Petr Plechác	Information-theoretic tools for parametrized coarse-graining of non-equilibrium extended systems	CoRR	2013	DBLP BibTeX RDF
32	Juan Chen, Jun-An Lu, Xiaofei Lu, Xiaoqun Wu, Guanrong Chen	Spectral coarse graining of complex clustered networks.	Commun. Nonlinear Sci. Numer. Simul.	2013	DBLP DOI BibTeX RDF
32	Michelle Archuleta, Jason E. McDermott, Jeremy S. Edwards, Haluk Resat	An Adaptive Coarse Graining Method for Signal Transduction in Three Dimensions.	Fundam. Informaticae	2012	DBLP DOI BibTeX RDF
32	Vincent Danos, Ricardo Honorato-Zimmer, Sebastián Jaramillo-Riveri, Sandro Stucki	Coarse-graining the Dynamics of Ideal Branched Polymers.	SASB	2012	DBLP DOI BibTeX RDF
32	An Ghysels, Benjamin T. Miller, Frank C. Pickard IV, Bernard R. Brooks	Comparing normal modes across different models and scales: Hessian reduction versus coarse-graining.	J. Comput. Chem.	2012	DBLP DOI BibTeX RDF
32	Evangelia Kalligiannaki, Markos A. Katsoulakis, Petr Plechác, Dionisios G. Vlachos	Multilevel coarse graining and nano-pattern discovery in many particle stochastic systems.	J. Comput. Phys.	2012	DBLP DOI BibTeX RDF
32	Katherine A. Bold, Karthikeyan Rajendran, Balázs Ráth, Ioannis G. Kevrekidis	An equation-free approach to coarse-graining the dynamics of networks	CoRR	2012	DBLP BibTeX RDF
32	David Andrieux	Bounding the coarse graining error in hidden Markov dynamics.	Appl. Math. Lett.	2012	DBLP DOI BibTeX RDF
32	José Juan Tapia, James R. Faeder, Brian Munsky	Adaptive coarse-graining for transient and quasi-equilibrium analyses of stochastic gene regulation.	CDC	2012	DBLP DOI BibTeX RDF
32	David Kauzlaric, Orly Liba, Yael Hanein, Pep Español, Andreas Greiner, Sauro Succi, Jan G. Korvink	Top-down vs. bottom-up coarse-graining of graphene and CNTs for nanodevice simulation.	NEMS	2012	DBLP DOI BibTeX RDF
32	Apostol Gramada, Philip E. Bourne	Coarse-graining the electrostatic potential via distributed multipole expansions.	Comput. Phys. Commun.	2011	DBLP DOI BibTeX RDF
32	Huan Zhao, Gangjin Wang, Cheng Xu 0001, Fei Yu 0001	Voice activity detection method based on multivalued coarse-graining Lempel-Ziv complexity.	Comput. Sci. Inf. Syst.	2011	DBLP DOI BibTeX RDF
32	Vasileios Basios, Dónal Mac Kernan	Symbolic Dynamics, Coarse Graining and the Monitoring of Complex Systems.	Int. J. Bifurc. Chaos	2011	DBLP DOI BibTeX RDF
32	David M. Ackerman, J. W. Evans	Boundary Conditions for Burton-Cabrera-Frank Type Step-Flow Models: Coarse-Graining of Discrete 2D Deposition-Diffusion Equations.	Multiscale Model. Simul.	2011	DBLP DOI BibTeX RDF