Search results for "Coiled-coil"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
321	Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh	Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models.	BIRD	2007	DBLP DOI BibTeX RDF	coiled-coil domains, Hidden Markov models, Protein structure prediction
258	Zhong Huang, Yun Li, Xiaohua Hu 0001	Anti-parallel Coiled Coils Structure Prediction by Support Vector Machine Classification.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF	coiled coil, SOCKET algorithm, protein sequence data, SVM
258	Zhong Huang, Yun Li, Xiaohua Hu 0001	SVM Classification to Predict Two Stranded Anti-parallel Coiled Coils based on Protein Sequence Data.	ICCSA (3)	2005	DBLP DOI BibTeX RDF	coiled coil, SOCKET algorithm, protein sequence data, SVM
168	Mona Singh 0001, Peter S. Kim	Towards predicting coiled-coil protein interactions.	RECOMB	2001	DBLP DOI BibTeX RDF
155	T. C. Ip, Vincent A. Fischetti, Jeanette P. Schmidt	An Algorithm for Identifying Similar Amino Acid Clusters among Different Alpha-Helical Coiled-Coil Proteins Using Their Secondary Structure.	Algorithmica	1999	DBLP DOI BibTeX RDF	Coiled-coil, Epitope, Dynamic programming, Computational biology, Protein structure
66	Gaurav Sharma 0003, Kaushal Rege, David Budil, Martin L. Yarmush, Constantinos Mavroidis	Design and modeling of a protein based nanoGripper.	IROS	2008	DBLP DOI BibTeX RDF
36	Giovanni Madeo, Castrense Savojardo, Matteo Manfredi, Pier Luigi Martelli, Rita Casadio	CoCoNat: a novel method based on deep learning for coiled-coil prediction.	Bioinform.	2023	DBLP DOI BibTeX RDF
36	Shi-Hao Feng, Chun-Qiu Xia, Hong-Bin Shen	CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.	Bioinform.	2022	DBLP DOI BibTeX RDF
36	Prasun Kumar, Derek N. Woolfson	Socket2: a program for locating, visualizing and analyzing coiled-coil interfaces in protein structures.	Bioinform.	2021	DBLP DOI BibTeX RDF
36	Krzysztof Szczepaniak, Adriana Bukala, Antonio Marinho da Silva Neto, Jan Ludwiczak, Stanislaw Dunin-Horkawicz	A library of coiled-coil domains: from regular bundles to peculiar twists.	Bioinform.	2021	DBLP DOI BibTeX RDF
36	Jan Ludwiczak, Aleksander Winski, Krzysztof Szczepaniak, Vikram Alva, Stanislaw Dunin-Horkawicz	DeepCoil - a fast and accurate prediction of coiled-coil domains in protein sequences.	Bioinform.	2019	DBLP DOI BibTeX RDF
36	Dmytro Guzenko, Sergei V. Strelkov	CCFold: rapid and accurate prediction of coiled-coil structures and application to modelling intermediate filaments.	Bioinform.	2018	DBLP DOI BibTeX RDF
36	Dinko Osmankovic, Semir Doric, Naris Pojskic, Lada Lukic Bilela	New Approach to Detect Coiled Coil and Leucine Zipper Motifs in Protein Sequences.	J. Comput. Biol.	2018	DBLP DOI BibTeX RDF
36	Chen Li 0021, Catherine Ching Han Chang, Jeremy Nagel, Benjamin T. Porebski, Morihiro Hayashida, Tatsuya Akutsu, Jiangning Song, Ashley M. Buckle	Critical evaluation of in silico methods for prediction of coiled-coil domains in proteins.	Briefings Bioinform.	2016	DBLP DOI BibTeX RDF
36	Dominic Simm, Klas Hatje, Martin Kollmar	Waggawagga: comparative visualization of coiled-coil predictions and detection of stable single α-helices (SAH domains).	Bioinform.	2015	DBLP DOI BibTeX RDF
36	Vladimir Potapov, Jenifer B. Kaplan, Amy E. Keating	Data-Driven Prediction and Design of bZIP Coiled-Coil Interactions.	PLoS Comput. Biol.	2015	DBLP DOI BibTeX RDF
36	Christopher W. Wood, Marc Bruning, Amaurys Ávila Ibarra, Gail J. Bartlett, Andrew R. Thomson, Richard B. Sessions, R. Leo Brady, Derek N. Woolfson	CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies.	Bioinform.	2014	DBLP DOI BibTeX RDF
36	Michael Kuhn 0004, Anthony A. Hyman, Andreas Beyer	Coiled-Coil Proteins Facilitated the Functional Expansion of the Centrosome.	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
36	Thomas L. Vincent, Peter J. Green, Derek N. Woolfson	LOGICOIL - multi-state prediction of coiled-coil oligomeric state.	Bioinform.	2013	DBLP DOI BibTeX RDF
36	Craig T. Armstrong, Thomas L. Vincent, Peter J. Green, Derek N. Woolfson	SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences.	Bioinform.	2011	DBLP DOI BibTeX RDF
36	Zhili Zuo, Neha Gandhi, Ricardo L. Mancera	Calculations of the Free Energy of Interaction of the c-Fos-c-Jun Coiled Coil: Effects of the Solvation Model and the Inclusion of Polarization Effects.	J. Chem. Inf. Model.	2010	DBLP DOI BibTeX RDF
36	Oliver D. Testa, Efrosini Moutevelis, Derek N. Woolfson	CC+: a relational database of coiled-coil structures.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
36	Lisa Bartoli, Piero Fariselli, Anders Krogh, Rita Casadio	CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information.	Bioinform.	2009	DBLP DOI BibTeX RDF
36	Piero Fariselli, Lisa Bartoli, Rita Casadio	Improving Coiled-Coil Prediction with Evolutionary Information.	CIBB	2009	DBLP DOI BibTeX RDF
36	Lucio Marcello, Suraj Menon, Pauline Ward, Jonathan M. Wilkes, Nicola G. Jones, Mark Carrington, J. David Barry	VSGdb: a database for trypanosome variant surface glycoproteins, a large and diverse family of coiled coil proteins.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
36	Annkatrin Rose, Eric A. Stahlberg, Iris Meier	Genome-wide identification and comparative analysis of coiled-coil proteins.	Scalable Comput. Pract. Exp.	2007	DBLP BibTeX RDF
36	Marek Orzechowski, Piotr Cieplak, Lucjan Piela	Theoretical calculation of the coiled-coil stability in water in the context of its possible use as a molecular rack.	J. Comput. Chem.	2002	DBLP DOI BibTeX RDF
36	Mauro Delorenzi, Terence P. Speed	An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.	Bioinform.	2002	DBLP DOI BibTeX RDF
36	Mona Singh 0001, Bonnie Berger, Peter S. Kim, James M. Berger, Andrea G. Cochran	Computational learning reveals coiled coil-like motifs in histidine kinase linker domains.	Proc. Natl. Acad. Sci. USA	1998	DBLP DOI BibTeX RDF
33	Piedachu Peris, Damián López, Marcelino Campos, José M. Sempere	Protein Motif Prediction by Grammatical Inference.	ICGI	2006	DBLP DOI BibTeX RDF	protein motif location, bioinformatics, Grammatical inference