Search results for "DNA-computing"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
115	Erwin P. Stoschek, Monika Sturm 0002, Thomas Hinze	DNA-Computing - ein funktionales Modell im laborpraktischen Experiment.	Inform. Forsch. Entwickl.	2001	DBLP DOI BibTeX RDF	Rekombinationstechnik, Molekularbiologie, Berechnungsmodell, funktionale Sprache, NP-Problem, Rucksackproblem, massive Datenparallelität, SIMD, DNA-Computing
97	Peng Yin 0003, Sudheer Sahu, Andrew J. Turberfield, John H. Reif	Design of Autonomous DNA Cellular Automata.	DNA	2005	DBLP DOI BibTeX RDF
95	John S. McCaskill, Robert Penchovsky, Marlies Gohlke, Jörg Ackermann, Thomas Rücker	Steady Flow Micro-Reactor Module for Pipelined DNA Computations.	DNA Computing	2000	DBLP DOI BibTeX RDF
90	Max H. Garzon, Vinhthuy T. Phan, Sujoy Roy, Andrew Neel	In Search of Optimal Codes for DNA Computing.	DNA	2006	DBLP DOI BibTeX RDF	Word design, encoding data on DNA, fault-tolerant DNA computing, maximal code sets, complex DNA self-assembly, shuffle codes, Gibbs energy
86	Yoichi Takenaka, Akihiro Hashimoto	Shortening the Computational Time of the Fluorescent DNA Computing.	DNA	2002	DBLP DOI BibTeX RDF
83	Lila Kari, Stavros Konstantinidis, Elena Losseva, Geoff Wozniak	Sticky-free and overhang-free DNA languages.	Acta Informatica	2003	DBLP DOI BibTeX RDF	Theoretical DNA computing, DNA encodings, codes, formal languages
81	Peng Yin 0003, Andrew J. Turberfield, Sudheer Sahu, John H. Reif	Design of an Autonomous DNA Nanomechanical Device Capable of Universal Computation and Universal Translational Motion.	DNA	2004	DBLP DOI BibTeX RDF
79	Paola Bonizzoni, Clelia de Felice, Giancarlo Mauri	Recombinant DNA , Gene Splicing as Generative Devices of Formal Languages.	CiE	2005	DBLP DOI BibTeX RDF
78	MingXin Lu, Xuejia Lai, Guozhen Xiao, Lei Qin	Symmetric-key cryptosystem with DNA technology.	Sci. China Ser. F Inf. Sci.	2007	DBLP DOI BibTeX RDF	symmetric-key encryption, DNA cryptography, DNA computing
77	John S. McCaskill, Ulrich Niemann	Graph Replacement Chemistry for DNA Processing.	DNA Computing	2000	DBLP DOI BibTeX RDF
75	Lila Kari, Stavros Konstantinidis, Petr Sosík	Preventing Undesirable Bonds Between DNA Codewords.	DNA	2004	DBLP DOI BibTeX RDF
74	Yoichi Takenaka, Akihiro Hashimoto	A Proposal of DNA Computing on Beads with Application to SAT Problems.	DNA	2001	DBLP DOI BibTeX RDF
71	Dongmin Kim, Soo-Yong Shin, In-Hee Lee, Byoung-Tak Zhang	NACST/Seq: A Sequence Design System with Multiobjective Optimization.	DNA	2002	DBLP DOI BibTeX RDF
70	Wendy K. Pogozelski, Matthew P. Bernard, Salvatore F. Priore, Anthony J. Macula	Experimental Validation of DNA Sequences for DNA Computing: Use of a SYBR Green I Assay.	DNA	2005	DBLP DOI BibTeX RDF
68	Christiaan V. Henkel, Reno S. Bladergroen, Crina I. A. Balog, André M. Deelder, Tom Head, Grzegorz Rozenberg, Herman P. Spaink	Protein output for DNA computing.	Nat. Comput.	2005	DBLP DOI BibTeX RDF	plasmid computing, DNA computing, proteomics
65	Robert Penchovsky, John S. McCaskill	Cascadable Hybridisation Transfer of Specific DNA between Microreactor Selection Modules.	DNA	2001	DBLP DOI BibTeX RDF
64	Christiaan V. Henkel, Grzegorz Rozenberg, Herman P. Spaink	Application of Mismatch Detection Methods in DNA Computing.	DNA	2004	DBLP DOI BibTeX RDF
64	Erik Winfree, Tony Eng, Grzegorz Rozenberg	String Tile Models for DNA Computing by Self-Assembly.	DNA Computing	2000	DBLP DOI BibTeX RDF
63	Kensaku Sakamoto, Masayuki Yamamura, Hiroshi Someya	Toward "Wet" Implementation of Genetic Algorithm for Protein Engineering.	DNA	2004	DBLP DOI BibTeX RDF
63	Yusuke Ogura, Takashi Kawakami, Fumika Sumiyama, Satoru Irie, Akira Suyama, Jun Tanida	Methods for Manipulating DNA Molecules in a Micrometer Scale Using Optical Techniques.	DNA	2004	DBLP DOI BibTeX RDF
62	Satoshi Kobayashi	Testing Structure Freeness of Regular Sets of Biomolecular Sequences.	DNA	2004	DBLP DOI BibTeX RDF	DNA Computing, Molecular Computing, Secondary Structures, Sequence Design
62	Guangzhao Cui, Cuiling Li, Xuncai Zhang, Yanfeng Wang, Xinbo Qi, Xiaoguang Li, Haobin Li	Application of DNA Computing by Self-assembly on 0-1 Knapsack Problem.	ISNN (3)	2009	DBLP DOI BibTeX RDF	DNA tile, DNA computing, Knapsack problem, Self-assembly
61	Aili Han	DNA Computing Model for the 0/1 Knapsack Problem.	HIS	2006	DBLP DOI BibTeX RDF
61	Arkadii G. D'yachkov, Anthony J. Macula, Vyacheslav V. Rykov, Vladimir Ufimtsev	DNA Codes Based on Stem Similarities Between DNA Sequences.	DNA	2007	DBLP DOI BibTeX RDF
61	Lila Kari, Kalpana Mahalingam	DNA Codes and Their Properties.	DNA	2006	DBLP DOI BibTeX RDF
58	Yanfeng Wang, Guangzhao Cui, Bu-Yi Huang, Linqiang Pan, Xuncai Zhang	DNA Computing Processor: An Integrated Scheme Based on Biochip Technology for Performing DNA Computing.	ICIC (3)	2006	DBLP DOI BibTeX RDF
57	Max H. Garzon, Tit-Yee Wong, Vinhthuy T. Phan	DNA Chips for Species Identification and Biological Phylogenies.	DNA	2009	DBLP DOI BibTeX RDF	DNA codeword design, noncrosshybridizing oligonucleotide bases, genomic signatures, DNA chips, 16S rRNA tree of life, phylogenetic analysis
57	Yusuke Ogura, Takashi Kawakami, Fumika Sumiyama, Akira Suyama, Jun Tanida	Parallel Translation of DNA Clusters by VCSEL Array Trapping and Temperature Control with Laser Illumination.	DNA	2003	DBLP DOI BibTeX RDF
57	Byoung-Tak Zhang, Ha-Young Jang	A Bayesian Algorithm for In Vitro Molecular Evolution of Pattern Classifiers.	DNA	2004	DBLP DOI BibTeX RDF
56	Tero Harju, Ion Petre, Grzegorz Rozenberg	Tutorial on DNA Computing and Graph Transformation - Computational Nature of Gene Assembly in Ciliates.	ICGT	2002	DBLP DOI BibTeX RDF
56	Satoshi Kashiwamura, Masashi Nakatsugawa, Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi	Towards Optimization of PCR Protocol in DNA Computing.	DNA	2001	DBLP DOI BibTeX RDF
55	Aili Han, Daming Zhu	DNA Computing Model for the Minimum Spanning Tree Problem.	SYNASC	2006	DBLP DOI BibTeX RDF
55	Olgica Milenkovic, Navin Kashyap	On the Design of Codes for DNA Computing.	WCC	2005	DBLP DOI BibTeX RDF
55	Yusuke Ogura, Rui Shogenji, Seiji Saito, Jun Tanida	Evaluation of Fundamental Characteristics of Information Systems Based on Photonic DNA Computing.	BioADIT	2006	DBLP DOI BibTeX RDF
55	Mohd Saufee Muhammad, Satomi Ueda, Osamu Ono, Junzo Watada, Marzuki Khalid	Solving Elevator Scheduling Problem Using DNA Computing Approach.	WSTST	2005	DBLP DOI BibTeX RDF
54	Eric Bach 0001, Anne Condon, Elton Glaser, Celena Tanguay	DNA Models and Algorithms for NP-complete Problems.	CCC	1996	DBLP DOI BibTeX RDF	3Sat, 3-Coloring, Independent Set problem, DNA algorithms, genetic algorithms, computational complexity, search problems, DNA computing, DNA computation, NP-complete problems, search algorithms, NP-hard problems
54	Tri Basuki Kurniawan, Zuwairie Ibrahim, Noor Khafifah Khalid, Marzuki Khalid	An Optimized Ant System Approach for DNA Sequence Optimization.	IWANN (2)	2009	DBLP DOI BibTeX RDF	DNA Sequence Optimization, Ant Colony Optimization, Parameter Tuning, Ant System
53	Andrés de la Peña, Francisco J. Cisneros, Ángel Goñi Moreno, Juan Castellanos	DNA Electrophoresis Simulation.	IWANN (2)	2009	DBLP DOI BibTeX RDF	Electrophoresis, Simulation, Software, DNA Computing
53	Fumiaki Tanaka, Masashi Nakatsugawa, Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi	Developing Support System for Sequence Design in DNA Computing.	DNA	2001	DBLP DOI BibTeX RDF
52	Ravinderjit S. Braich, Cliff Johnson, Paul W. K. Rothemund, Darryl Hwang, Nickolas V. Chelyapov, Leonard M. Adleman	Solution of a Satisfiability Problem on a Gel-Based DNA Computer.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	Masami Hagiya	From Molecular Computing to Molecular Programming.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	Maurice Margenstern, Yurii Rogozhin	About Time-Varying Distributed H Systems.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	Elizabeth Goode, David Harlan Wood, Junghuei Chen	DNA Implementation of a Royal Road Fitness Evaluation.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	Rudolf Freund, Franziska Freund	Molecular Computing with Generalized Homogeneous P-Systems.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	Ken Komiya, Kensaku Sakamoto, Hidetaka Gouzu, Shigeyuki Yokoyama, Masanori Arita, Akio Nishikawa, Masami Hagiya	Successive State Transitions with I/O Interface by Molecules.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	John H. Reif, Thomas H. LaBean, Nadrian C. Seeman	Challenges and Applications for Self-Assembled DNA Nanostructures.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	John H. Reif, Thomas H. LaBean	Computationally Inspired Biotechnologies: Improved DNA Synthesis and Associative Search Using Error-Correcting Codes and Vector-Quantization.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	Pierluigi Frisco	Diophantine Equations and Splicing: A New Demonstration of the Generative Capability of H Systems.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	John A. Rose, Russell J. Deaton	The Fidelity of Annealing-Ligation: A Theoretical Analysis.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	Kevin Chen, Vijay Ramachandran	A Space-Efficient Randomized DNA Algorithm for k-SAT.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	Ron Weiss, Thomas F. Knight Jr.	Engineered Communications for Microbial Robotics.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	Yasubumi Sakakibara	Solving Computational Learning Problems of Boolean Formulae on DNA Computers.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	Paola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza	DNA and Circular Splicing.	DNA Computing	2000	DBLP DOI BibTeX RDF
52	Sergio Díaz, Juan Luis Esteban, Mitsunori Ogihara	A DNA-Based Random Walk Method for Solving k-SAT.	DNA Computing	2000	DBLP DOI BibTeX RDF
51	Soo-Yong Shin, In-Hee Lee, Dongmin Kim, Byoung-Tak Zhang	Multiobjective evolutionary optimization of DNA sequences for reliable DNA computing.	IEEE Trans. Evol. Comput.	2005	DBLP DOI BibTeX RDF
51	Satoshi Kobayashi, Tomohiro Kondo, Masanori Arita	On Template Method for DNA Sequence Design.	DNA	2002	DBLP DOI BibTeX RDF
51	Hiroki Uejima, Masami Hagiya, Satoshi Kobayashi	Horn Clause Computation by Self-assembly of DNA Molecules.	DNA	2001	DBLP DOI BibTeX RDF
51	Udo Feldkamp, Sam Saghafi, Wolfgang Banzhaf, Hilmar Rauhe	DNASequencesGenerator: A Program for the Construction of DNA Sequences.	DNA	2001	DBLP DOI BibTeX RDF
51	Ji Youn Lee, Soo-Yong Shin, Sirk June Augh, Tai Hyun Park, Byoung-Tak Zhang	Temperature Gradient-Based DNA Computing for Graph Problems with Weighted Edges.	DNA	2002	DBLP DOI BibTeX RDF
51	Danny van Noort, Frank-Ulrich Gast, John S. McCaskill	DNA Computing in Microreactors.	DNA	2001	DBLP DOI BibTeX RDF
51	Carmen Graciani Díaz, Mario J. Pérez-Jiménez	Using Automated Reasoning Systems on Molecular Computing.	DNA	2004	DBLP DOI BibTeX RDF
51	Giuditta Franco, Cinzia Giagulli, Carlo Laudanna, Vincenzo Manca	DNA Extraction by XPCR.	DNA	2004	DBLP DOI BibTeX RDF
51	David Spetzler, Fusheng Xiong, Wayne D. Frasch	Heuristic Solution to a 10-City Asymmetric Traveling Salesman Problem Using Probabilistic DNA Computing.	DNA	2007	DBLP DOI BibTeX RDF	Ligation, Denaturing PAGE, Magnetic affinity, Traveling Salesman Problem, Hybridization, DNA computing
51	Boris Shimanovsky, Jessica Feng, Miodrag Potkonjak	Hiding Data in DNA.	Information Hiding	2002	DBLP DOI BibTeX RDF
50	Tero Harju, Ion Petre, Grzegorz Rozenberg	Tutorial on DNA Computing and Graph Transformation.	ICGT	2004	DBLP DOI BibTeX RDF
50	Lila Kari, Kalpana Mahalingam	Watson-Crick Conjugate and Commutative Words.	DNA	2007	DBLP DOI BibTeX RDF
49	Atsushi Kameda, Nobuo Matsuura, Masahito Yamamoto, Azuma Ohuchi	An Analysis of Computational Efficiency of DNA Computing.	UMC	2002	DBLP DOI BibTeX RDF
49	Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J. Burns, Qing Wu 0002	Hardware Acceleration for Thermodynamic Constrained DNA Code Generation.	DNA	2007	DBLP DOI BibTeX RDF
49	Masashi Shiozaki, Hirotaka Ono 0001, Kunihiko Sadakane, Masafumi Yamashita	A Probabilistic Model of the DNA Conformational Change.	DNA	2006	DBLP DOI BibTeX RDF
49	Zuwairie Ibrahim, John A. Rose, Yusei Tsuboi, Osamu Ono, Marzuki Khalid	A New Readout Approach in DNA Computing Based on Real-Time PCR with TaqMan Probes.	DNA	2006	DBLP DOI BibTeX RDF
48	Christiaan V. Henkel, Grzegorz Rozenberg, Herman P. Spaink	Application of Mismatch Detection Methods in DNA Computing.	Nat. Comput.	2006	DBLP DOI BibTeX RDF	mismatch detection, mutation detection, DNA computing, DNA hybridization
48	Lila Kari	Nanocomputing by Self-assembly.	UC	2007	DBLP DOI BibTeX RDF
48	Sanjeev Baskiyar	Simulating DNA Computing.	HiPC	2002	DBLP DOI BibTeX RDF	Simulation, Parallel Computing, DNA, Hamiltonian path, Educational tool
47	Gang Fang, Jin Xu, Shemin Zhang	Performing DNA computation with RecA-mediated triple-stranded DNA structure.	Nat. Comput.	2009	DBLP DOI BibTeX RDF	RecA protein, Satisfiability problem (SAT), Triple-stranded DNA structure, DNA computing, NP-complete problems
46	Zhiquan Frank Qiu, Mi Lu	A Surface-Based DNA Algorithm for the Expansion of Symbolic Determinants.	IPDPS Workshops	2000	DBLP DOI BibTeX RDF
46	Grace Steele, Vojislav Stojkovic	Agent-Oriented Approach to DNA Computing.	CSB	2004	DBLP DOI BibTeX RDF
46	Grzegorz Rozenberg, Arto Salomaa	DNA Computing: New Ideas and Paradigms.	ICALP	1999	DBLP DOI BibTeX RDF
45	Hee-Woong Lim, Hae-Man Jang, Sung-Mo Ha, Young-Gyu Chai, Suk-In Yoo, Byoung-Tak Zhang	A Lab-on-a-Chip Module for Bead Separation in DNA-Based Concept Learning.	DNA	2003	DBLP DOI BibTeX RDF
45	Luca Cardelli	Strand Algebras for DNA Computing.	DNA	2009	DBLP DOI BibTeX RDF
45	Thomas Hinze, Uwe Hatnik, Monika Sturm 0002	An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification.	DNA	2001	DBLP DOI BibTeX RDF
45	Ken Komiya, Masayuki Yamamura, John A. Rose	Experimental Validation of Signal Dependent Operation in Whiplash PCR.	DNA	2008	DBLP DOI BibTeX RDF
45	Lila Kari, Kalpana Mahalingam, Gabriel Thierrin	The syntactic monoid of hairpin-free languages.	Acta Informatica	2007	DBLP DOI BibTeX RDF
45	Aili Han, Daming Zhu	A New DNA-Based Approach to Solve the Maximum Weight Clique Problem.	ICIC (3)	2006	DBLP DOI BibTeX RDF
44	Zhixiang Yin, Jianzhong Cui, Jin Yang	A Surface-Based DNA Computing for the Positive Integer Linear Programming Problem.	ICIC (1)	2007	DBLP DOI BibTeX RDF	0-1 Programming Problem, Integer linear programming, DNA Computing, NP-Complete Problem
43	Tri Basuki Kurniawan, Noor Khafifah Khalid, Zuwairie Ibrahim, Marzuki Khalid, Martin Middendorf	Evaluation of Ordering Methods for DNA Sequence Design Based on Ant Colony System.	Asia International Conference on Modelling and Simulation	2008	DBLP DOI BibTeX RDF
43	Keiichiro Takahashi, Satsuki Yaegashi, Atsushi Kameda, Masami Hagiya	Chain Reaction Systems Based on Loop Dissociation of DNA.	DNA	2005	DBLP DOI BibTeX RDF
42	Don Jyh-Fu Jeng, Rohani Binti Abu Bakar, Junzo Watada	DNA Computing Approach to Management Engineering.	KES (3)	2007	DBLP DOI BibTeX RDF	management engineering, logistic planning, optimization, forecasting, DNA computing
42	Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi	The Effect of the Bulge Loop upon the Hybridization Process in DNA Computing.	ICES	2003	DBLP DOI BibTeX RDF	DNA computing
42	Zuwairie Ibrahim, Yusei Tsuboi, Osamu Ono, Marzuki Khalid	Improving Initial Pool Generation of Direct-Proportional Length-Based DNA Computing by Parallel Overlap Assembly.	WSTST	2005	DBLP DOI BibTeX RDF
42	Zuwairie Ibrahim, Yusei Tsuboi, Osamu Ono, Marzuki Khalid	A Study on Lower Bound of Direct Proportional Length-Based DNA Computing for Shortest Path Problem.	CIS	2004	DBLP DOI BibTeX RDF
41	Zhixiang Yin, Jin Yang, Jianzhong Cui, Jiaxiu Zhang	Evolutionary Model for Sequence Generation.	ICIC (1)	2007	DBLP DOI BibTeX RDF	DNA Sequence Generation System, DNA coding method, DNA computing, Hamiltonian path problem, Evolution model
41	Udo Feldkamp, Hilmar Rauhe, Wolfgang Banzhaf	Software Tools for DNA Sequence Design.	Genet. Program. Evolvable Mach.	2003	DBLP DOI BibTeX RDF	molecular self-assembly, specific hybridization, DNA computing, DNA nanotechnology, sequence design
41	Akio Nishikawa, Masayuki Yamamura, Masami Hagiya	DNA computation simulator based on abstract bases.	Soft Comput.	2001	DBLP DOI BibTeX RDF	Threshold approach, Stochastic approach, Fitting parameters using genetic algorithms, Simulation, DNA computing
41	Rudi Pendavingh, Petra Schuurman, Gerhard J. Woeginger	De Bruijn Graphs and DNA Graphs.	WG	2001	DBLP DOI BibTeX RDF	De Bruijn graph, DNA graphs, computational complexity, graph theory, NP-hardness, DNA computing, recognition algorithm
41	Masahito Yamamoto, Nobuo Matsuura, Toshikazu Shiba, Yumi Kawazoe, Azuma Ohuchi	Solutions of Shortest Path Problems by Concentration Control.	DNA	2001	DBLP DOI BibTeX RDF
40	Bin Wang 0005, Qiang Zhang 0008, Rui Zhang	Design of DNA Sequence Based on Improved Genetic Algorithm.	ICIC (1)	2008	DBLP DOI BibTeX RDF
40	Zuwairie Ibrahim, Yusei Tsuboi, Osamu Ono, Marzuki Khalid	Hybrid Concentration-Controlled Direct-Proportional Length-Based DNA Computing for Numerical Optimization of the Shortest Path Problem.	BioADIT	2006	DBLP DOI BibTeX RDF
40	Mohd Saufee Muhammad, Zuwairie Ibrahim, Satomi Ueda, Osamu Ono, Marzuki Khalid	DNA Computing for Complex Scheduling Problem.	ICNC (2)	2005	DBLP DOI BibTeX RDF
39	Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi	Nearest-Neighbor Thermodynamics of DNA Sequences with Single Bulge Loo.	DNA	2003	DBLP DOI BibTeX RDF
39	Julia Khodor, David K. Gifford	Programmed Mutagenesis Is a Universal Model of Computation.	DNA	2001	DBLP DOI BibTeX RDF