Search results for "FASTA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
71	Yu-Lun Kuo, Chao-Tung Yang, Chuan-Lin Lai, Tsai-Ming Tseng	Construct a Grid Computing Environment for Bioinformatics.	ISPAN	2004	DBLP DOI BibTeX RDF	FASTA, BioGrid, Grid Computing, Bioinformatics, Cluster Computing
57	Armando J. Pinho, Diogo Pratas	MFCompress: a compression tool for FASTA and multi-FASTA data.	Bioinform.	2014	DBLP DOI BibTeX RDF
57	P. Durand, L. Canard, J. P. Mornon	Visual BLAST and visual FASTA: graphic workbenches for interactive analysis of full BLAST and FASTA outputs under Microsoft Windows 95/NT.	Comput. Appl. Biosci.	1997	DBLP DOI BibTeX RDF
52	Sven Mielordt, Ivo Grosse, Jürgen Kleffe	Data Structures for Genome Annotation, Alternative Splicing, and Validation.	DILS	2006	DBLP DOI BibTeX RDF	Gene and genome annotation, splice template, validation and confirmation, Fasta-XML format, data integration, quality control, alternative splicing
38	Friman Sánchez, Esther Salamí, Alex Ramírez, Mateo Valero	Performance Analysis of Sequence Alignment Applications.	IISWC	2006	DBLP DOI BibTeX RDF
38	Snehasis Mukhopadhyay, Changhong Tang, Jeffrey Huang, Mathew J. Palakal	Genetic Sequence Classification and its Application to Cross-Species Homology Detection.	J. VLSI Signal Process.	2003	DBLP DOI BibTeX RDF	unsupervised and supervised learning, cross-species homology detection, clustering, artificial neural network, sequence alignment, sequence classification
38	Panu Somervuo, Teuvo Kohonen	Clustering and Visualization of Large Protein Sequence Databases by Means of an Extension on the Self-Organizing Map.	Discovery Science	2000	DBLP DOI BibTeX RDF
28	Esteban Garzón, Robert Hanhan, Marco Lanuzza, Adam Teman, Leonid Yavits	FASTA: Revisiting Fully Associative Memories in Computer Microarchitecture.	IEEE Access	2024	DBLP DOI BibTeX RDF
28	Adam Bessa-Silva	Fasta2Structure: a user-friendly tool for converting multiple aligned FASTA files to STRUCTURE format.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
28	Hao Zhang, Honglei Song, Xiaoming Xu, Qixin Chang, Mingkai Wang, Yanjie Wei, Zekun Yin, Bertil Schmidt, Weiguo Liu	RabbitFX: Efficient Framework for FASTA/Q File Parsing on Modern Multi-Core Platforms.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
28	Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira	SEDA: A Desktop Tool Suite for FASTA Files Processing.	IEEE ACM Trans. Comput. Biol. Bioinform.	2022	DBLP DOI BibTeX RDF
28	Umberto Ferraro Petrillo, Francesco Palini, Giuseppe Cattaneo, Raffaele Giancarlo	Correction to: FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
28	Magnus G. Jespersen, Andrew Hayes, Mark R. Davies	Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs.	J. Open Source Softw.	2022	DBLP DOI BibTeX RDF
28	Carlos Cid, John Petter Indrøy, Håvard Raddum	FASTA - A Stream Cipher for Fast FHE Evaluation.	CT-RSA	2022	DBLP DOI BibTeX RDF
28	Youri Hoogstrate, Guido Jenster, Harmen J. G. van de Werken	FASTAFS: file system virtualisation of random access compressed FASTA files.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
28	Umberto Ferraro Petrillo, Francesco Palini, Giuseppe Cattaneo, Raffaele Giancarlo	FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
28	Tao Tang, Jinyan Li 0001	Transformation of FASTA files into feature vectors for unsupervised compression of short reads databases.	J. Bioinform. Comput. Biol.	2021	DBLP DOI BibTeX RDF
28	Carlos Cid, John Petter Indrøy, Håvard Raddum	FASTA â" a stream cipher for fast FHE evaluation.	IACR Cryptol. ePrint Arch.	2021	DBLP BibTeX RDF
28	Umberto Ferraro Petrillo, Francesco Palini, Giuseppe Cattaneo, Raffaele Giancarlo	FASTA/Q Data Compressors for MapReduce-Hadoop Genomics: Space and Time Savings Made Easy - Version 1.	CoRR	2020	DBLP BibTeX RDF
28	Luigi Marongiu, Heike Allgayer	Mingle: A Command Line Utility for Merging Multi-fasta Files.	J. Comput. Biol.	2019	DBLP DOI BibTeX RDF
28	Elisha D. Roberson	Motif scraper: a cross-platform, open-source tool for identifying degenerate nucleotide motif matches in FASTA files.	Bioinform.	2018	DBLP DOI BibTeX RDF
28	Saif Mahmood, Mohammad Hamiruce Marhaban, Fakhrul Zaman Rokhani, Khairulmizam Samsudin, Olasimbo Ayodeji Arigbabu	FASTA-ELM: A fast adaptive shrinkage/thresholding algorithm for extreme learning machine and its application to gender recognition.	Neurocomputing	2017	DBLP DOI BibTeX RDF
28	Umberto Ferraro Petrillo, Gianluca Roscigno, Giuseppe Cattaneo, Raffaele Giancarlo	FASTdoop: a versatile and efficient library for the input of FASTA and FASTQ files for MapReduce Hadoop bioinformatics applications.	Bioinform.	2017	DBLP DOI BibTeX RDF
28	Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho	Cryfa: A Tool to Compact and Encrypt FASTA Files.	PACBB	2017	DBLP DOI BibTeX RDF
28	Elisha D. Roberson	Identification of high-efficiency 3′GG gRNA motifs in indexed FASTA files with ngg2.	PeerJ Comput. Sci.	2015	DBLP DOI BibTeX RDF
28	Tom Goldstein, Christoph Studer, Richard G. Baraniuk	FASTA: A Generalized Implementation of Forward-Backward Splitting.	CoRR	2015	DBLP BibTeX RDF
28	Elisha D. Roberson	Identification of high-efficiency 3'GG gRNA motifs in indexed FASTA files with ngg2.	PeerJ Prepr.	2015	DBLP DOI BibTeX RDF
28	Matthew D. Shirley, Zhaorong Ma, Brent S. Pedersen, Sarah J. Wheelan	Efficient "pythonic" access to FASTA files using pyfaidx.	PeerJ Prepr.	2015	DBLP DOI BibTeX RDF
28	Tom Goldstein, Christoph Studer, Richard G. Baraniuk	A Field Guide to Forward-Backward Splitting with a FASTA Implementation.	CoRR	2014	DBLP BibTeX RDF
28	Erich J. Baker, Guan Ning Lin, Huadong Liu, Ravi Kosuri	NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks.	Source Code Biol. Medicine	2007	DBLP DOI BibTeX RDF
28	Barry J. Ryan, Ronan Barrett	ProteinParser - A community based tool for the generation of a detailed protein consensus and FASTA output.	Comput. Methods Programs Biomed.	2007	DBLP DOI BibTeX RDF
28	Hend S. Al-Khalifa, Hugh C. Davis	FAsTA: A Folksonomy-Based Automatic Metadata Generator.	EC-TEL	2007	DBLP DOI BibTeX RDF
28	A. Sagliano, Mariateresa Volpicella, Raffaele Gallerani, Luigi R. Ceci	A FastA based compilation of higher plant mitochondrial tRNA genes.	Nucleic Acids Res.	1998	DBLP DOI BibTeX RDF
28	Hedvig Hegyi, Sándor Pongor	Predicting potential domain homologies from FASTA search results.	Comput. Appl. Biosci.	1993	DBLP DOI BibTeX RDF
28	Perry L. Miller, Prakash M. Nadkarni, N. M. Carriero	Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm.	Comput. Appl. Biosci.	1991	DBLP DOI BibTeX RDF
19	Shannon Steinfadt, Johnnie W. Baker	SWAMP: Smith-Waterman using associative massive parallelism.	IPDPS	2008	DBLP DOI BibTeX RDF
19	Alireza Hadj Khodabakhshi, Mehdi Mirzazadeh, Arvind Gupta	An efficient data structure for applying multiple seeds in homology search.	BIBE	2007	DBLP DOI BibTeX RDF
19	Vipin Sachdeva, Michael Kistler, William Evan Speight, Tzy-Hwa Kathy Tzeng	Exploring the Viability of the Cell Broadband Engine for Bioinformatics Applications.	IPDPS	2007	DBLP DOI BibTeX RDF
19	Thomas Rattei, Mathias C. Walter, Roland Arnold, David P. Anderson, Hans-Werner Mewes	Using Public Resource Computing and Systematic Pre-calculation for Large Scale Sequence Analysis.	GCCB	2006	DBLP DOI BibTeX RDF	sequence similarity, protein homology, public resource computing, grid computing, sequence analysis, protein domain
19	Chao-Tung Yang, Yi-Chun Hsiung, Heng-Chuan Kan	Implementation and Evaluation of a Java Based Computational Grid for Bioinformatics Applications.	AINA	2005	DBLP DOI BibTeX RDF
19	Gabriel Caffarena, Slobodan Bojanic, Juan A. López, Carlos E. Pedreira, Octavio Nieto-Taladriz	High-speed systolic array for gene matching.	FPGA	2004	DBLP DOI BibTeX RDF
19	S. Alireza Aghili, Ozgur D. Sahin, Divyakant Agrawal, Amr El Abbadi	Efficient Filtration of Sequence Similarity Search Through Singular Value Decomposition.	BIBE	2004	DBLP DOI BibTeX RDF	Approximate String Search, Sequence Homology, Bioinformatics, Singular Value Decomposition, Comparative genomics
19	Stefan Dydel, Piotr Bala	Large Scale Protein Sequence Alignment Using FPGA Reprogrammable Logic Devices.	FPL	2004	DBLP DOI BibTeX RDF
19	Salvatore Alesci, Yan A. Su, George P. Chrousos	hMiDas and hMitChip: New Opportunities in Mitochondrial Bioinformatics and Genomic Medicine.	CBMS	2004	DBLP DOI BibTeX RDF
19	Oriel Bergig, Danny Barash, Klara Kedem	RNA Motif Search Using the Structure to String (STR2) Method.	CSB	2004	DBLP DOI BibTeX RDF
19	Paul Gardner-Stephen, Greg Knowles	DASH: Localising Dynamic Programming for Order of Magnitude Faster, Accurate Sequence Alignment.	CSB	2004	DBLP DOI BibTeX RDF
19	Chao-Tung Yang, Yu-Lun Kuo, Chuan-Lin Lai	Design and Implementation of a Computational Grid for Bioinformatics.	EEE	2004	DBLP DOI BibTeX RDF
19	Chao-Tung Yang, Yu-Lun Kuo, Kuan-Ching Li, Jean-Luc Gaudiot	On Design of Cluster and Grid Computing Environment Toolkit for Bioinformatics Applications.	IWDC	2004	DBLP DOI BibTeX RDF
19	Juan Méndez, Antonio Falcón, Javier Lorenzo 0001	A Procedure for Biological Sensitive Pattern Matching in Protein Sequences.	IbPRIA	2003	DBLP DOI BibTeX RDF	Biological Pattern Analysis, Pattern Matching, Multidimensional Scaling, Sequence Alignments, SIMD Processing
19	S. Alireza Aghili, Divyakant Agrawal, Amr El Abbadi	Filtration of String Proximity Search via Transformation.	BIBE	2003	DBLP DOI BibTeX RDF
19	Chi Wai Yu, K. H. Kwong, Kin-Hong Lee, Philip Heng Wai Leong	A Smith-Waterman Systolic Cell.	FPL	2003	DBLP DOI BibTeX RDF
19	Paul Gardner-Stephen, Greg Knowles	A Novel Architecture for Genomic Sequence Searching and Alignment.	Asia-Pacific Computer Systems Architecture Conference	2003	DBLP DOI BibTeX RDF
19	S. Alireza Aghili, Divyakant Agrawal, Amr El Abbadi	BFT: Bit Filtration Technique for Approximate String Join in Biological Databases.	SPIRE	2003	DBLP DOI BibTeX RDF
19	Twee-Hee Ong, Kian-Lee Tan, Hao Wang	Indexing Genomic Databases for Fast Homology Searching.	DEXA	2002	DBLP DOI BibTeX RDF
19	Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong-Chan Park	PDB_ISL: an intermediate sequence library for protein structure assignment.	RECOMB	2000	DBLP DOI BibTeX RDF	PDB_ISL, PSI-BLAST, structure assignment, homology