Search results for "GPCRs"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
163	Bekir Ergüner, Özgün Erdogan, Osman Ugur Sezerman	Prediction and Classification for GPCR Sequences Based on Ligand Specific Features.	ISCIS	2006	DBLP DOI BibTeX RDF	G-Protein Coupled Receptors (GPCRs), ligand specificity, GPCR sequence
156	Ravi Gupta, Ankush Mittal, Kuldip Singh	A Novel and Efficient Technique for Identification and Classification of GPCRs.	IEEE Trans. Inf. Technol. Biomed.	2008	DBLP DOI BibTeX RDF
131	Jingyi Yang, Jitender S. Deogun	G Protein-Coupled Receptor Classification at the Subfamily Level with Probabilistic Suffix Tree.	CIBCB	2006	DBLP DOI BibTeX RDF
109	Jingyi Yang, Jitender S. Deogun	Classifying G Protein-Coupled Receptors with Multiple Physicochemical Properties.	BMEI (1)	2008	DBLP DOI BibTeX RDF	physicochemical properties, SVM, protein classification, G Protein-Coupled Receptors
109	Burcu Bakir, Osman Ugur Sezerman	Functional Classification of G-Protein Coupled Receptors, Based on Their Specific Ligand Coupling Patterns.	EvoWorkshops	2006	DBLP DOI BibTeX RDF
87	Quan Gu, Yongsheng Ding	Binary particle swarm optimization based prediction of G-protein-coupled receptor families with feature selection.	GEC Summit	2009	DBLP DOI BibTeX RDF	feature selection, ensemble classifier, binary particle swarm optimization, G-protein-coupled receptors
65	Majid Beigi, Andreas Zell	A Novel Method for Classifying Subfamilies and Sub-subfamilies of G-Protein Coupled Receptors.	ISBMDA	2006	DBLP DOI BibTeX RDF
54	Pratibha Mehta Luthra, Sandeep Kumar Barodia, Amresh Prakash, Ramraghubir	cDNA-Derived Amino Acid Sequence from Rat Brain A2aR Possesses Conserved Motifs PMNYM of TM 5 Domain, Which May Be Involved in Dimerization of A2aR.	PRIB	2007	DBLP DOI BibTeX RDF	Adenosine A2a receptor, cDNA, GPCRs, RT-PCR, TM 5
51	Maozi Chen, Yankang Jing, Lirong Wang, Zhiwei Feng, Xiang-Qun Xie	DAKB-GPCRs: An Integrated Computational Platform for Drug Abuse Related GPCRs.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
26	Jiaqi Hu, Xianqiang Sun, Zhengzhong Kang, Jianxin Cheng	Computational investigation of functional water molecules in GPCRs bound to G protein or arrestin.	J. Comput. Aided Mol. Des.	2023	DBLP DOI BibTeX RDF
26	Haruki Yamane, Takashi Ishida 0002	Helix encoder: a compound-protein interaction prediction model specifically designed for class A GPCRs.	Frontiers Bioinform.	2023	DBLP DOI BibTeX RDF
26	Rui P. Ribeiro, Alejandro Giorgetti	pyGOMoDo: GPCRs modeling and docking with python.	Bioinform.	2023	DBLP DOI BibTeX RDF
26	Shiqi Li, Xin Chen, Jianfang Chen, Binjian Wu, Jing Liu, Yanzhi Guo, Menglong Li, Xuemei Pu	Multi-omics integration analysis of GPCRs in pan-cancer to uncover inter-omics relationships and potential driver genes.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
26	Alessandro Nicoli, Andreas Dunkel, Toni Giorgino, Chris de Graaf, Antonella Di Pizio	Classification Model for the Second Extracellular Loop of Class A GPCRs.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
26	Jiansheng Wu, Chuangchuang Lan, Zheming Mei, Xiaohuyan Chen, Yanxiang Zhu, Haifeng Hu 0004, Yemin Diao	Transfer learning with molecular graph convolutional networks for accurate modeling and representation of bioactivities of ligands targeting GPCRs without sufficient data.	Comput. Biol. Chem.	2022	DBLP DOI BibTeX RDF
26	Aleksandra E. Badaczewska-Dawid, Sebastian Kmiecik, Michal Kolinski	Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinement.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
26	Kwabena Owusu Dankwah, Jonathon E. Mohl, Khodeza Begum, Ming-Ying Leung	Understanding the binding of the same ligand to GPCRs of different families.	BIBM	2021	DBLP DOI BibTeX RDF
26	Gurdeep Singh	A machine learning-guided framework to unravel determinants of G-protein selectivity in GPCRs (PDF / PS)		2021	RDF
26	Lindsey Burggraaff, Amber van Veen, Chi Chung Lam, Herman W. T. van Vlijmen, Adriaan P. IJzerman, Gerard J. P. van Westen	Annotation of Allosteric Compounds to Enhance Bioactivity Modeling for Class A GPCRs.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
26	Xiaoqing Ru, Lida Wang, Lihong Li 0005, Hui Ding, Xiucai Ye, Quan Zou 0001	Exploration of the correlation between GPCRs and drugs based on a learning to rank algorithm.	Comput. Biol. Medicine	2020	DBLP DOI BibTeX RDF
26	Brian Joseph Bender, Brennica Marlow, Jens Meiler	Improving homology modeling from low-sequence identity templates in Rosetta: A case study in GPCRs.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
26	Passainte Ibrahim, David Wifling, Timothy Clark	Universal Activation Index for Class A GPCRs.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
26	Damian Lesniak, Sabina Podlewska, Stanislaw Jastrzebski, Igor Sieradzki, Andrzej J. Bojarski, Jacek Tabor	Development of New Methods Needs Proper Evaluation - Benchmarking Sets for Machine Learning Experiments for Class A GPCRs.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
26	Huajing Ling, Hongjie Wu, Jiayan Han, Jiwen Ding, Weizhong Lu, Qiming Fu 0001	Knowledge Based Helix Angle and Residue Distance Restraint Free Energy Terms of GPCRs.	ICIC (2)	2019	DBLP DOI BibTeX RDF
26	Kasper Harpsøe, Michael W. Boesgaard, Christian Munk, Hans Bräuner-Osborne, David E. Gloriam	Structural insight to mutation effects uncover a common allosteric site in class C GPCRs.	Bioinform.	2017	DBLP DOI BibTeX RDF
26	Luca Ponzoni, Giulia Rossetti, Luca Maggi, Alejandro Giorgetti, Paolo Carloni, Cristian Micheletti	Unifying view of mechanical and functional hotspots across class A GPCRs.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
26	Emmanuel Bresso, Roberto C. Togawa, Kim E. Hammond-Kosack, Martin Urban, Bernard Maigret, Natália Florencio Martins	GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease.	BMC Bioinform.	2016	DBLP DOI BibTeX RDF
26	Eelke B. Lenselink, Willem Jespers, Herman W. T. van Vlijmen, Adriaan P. IJzerman, Gerard J. P. van Westen	Interacting with GPCRs: Using Interaction Fingerprints for Virtual Screening.	J. Chem. Inf. Model.	2016	DBLP DOI BibTeX RDF
26	Vaclav Cvicek, William A. Goddard III, Ravinder Abrol	Structure-Based Sequence Alignment of the Transmembrane Domains of All Human GPCRs: Phylogenetic, Structural and Functional Implications.	PLoS Comput. Biol.	2016	DBLP DOI BibTeX RDF
26	A. J. Venkatakrishnan, Xavier Deupí, Guillaume Lebon, Franziska M. Heydenreich, Tilman Flock, Tamara Miljus, Santhanam Balaji, Michel Bouvier, Dmitry B. Veprintsev, Christopher G. Tate, Gebhard F. X. Schertler, M. Madan Babu	Diverse activation pathways in class A GPCRs converge near the G-protein-coupling region.	Nat.	2016	DBLP DOI BibTeX RDF
26	Muhammad Javed Iqbal, Ibrahima Faye, Samir Brahim Belhaouari	Classification of GPCRs proteins using a statistical encoding method.	IJCNN	2016	DBLP DOI BibTeX RDF
26	James A. R. Dalton, Isaias Lans, Jesús Giraldo	Quantifying conformational changes in GPCRs: glimpse of a common functional mechanism.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
26	Tannu Kumari, Kamal Raj Pardasani	Mining amino acid association patterns in class B GPCRs.	Int. J. Bioinform. Res. Appl.	2015	DBLP DOI BibTeX RDF
26	Tilman Flock, Charles N. J. Ravarani, Dawei Sun 0002, A. J. Venkatakrishnan, Melis Kayikci, Christopher G. Tate, Dmitry B. Veprintsev, M. Madan Babu	Universal allosteric mechanism for Gα activation by GPCRs.	Nat.	2015	DBLP DOI BibTeX RDF
26	Jie Xia, Hongwei Jin, Zhenming Liu, Liang Ren Zhang, Xiang Simon Wang	An Unbiased Method To Build Benchmarking Sets for Ligand-Based Virtual Screening and its Application To GPCRs.	J. Chem. Inf. Model.	2014	DBLP DOI BibTeX RDF
26	Zhiwei Feng, Mohammed Hamed Alqarni, Peng Yang, Qin Tong, Ananda Chowdhury, Lirong Wang, Xiang-Qun Xie	Modeling, Molecular Dynamics Simulation, and Mutation Validation for Structure of Cannabinoid Receptor 2 Based on Known Crystal Structures of GPCRs.	J. Chem. Inf. Model.	2014	DBLP DOI BibTeX RDF
26	Miwa Sato, Takatsugu Hirokawa	Extended Template-Based Modeling and Evaluation Method Using Consensus of Binding Mode of GPCRs for Virtual Screening.	J. Chem. Inf. Model.	2014	DBLP DOI BibTeX RDF
26	Caroline König, René Alquézar, Alfredo Vellido, Jesús Giraldo	Reducing the n-gram feature space of class C GPCRs to subtype-discriminating patterns.	J. Integr. Bioinform.	2014	DBLP DOI BibTeX RDF
26	Yan Yan, Xinwei Shao, Zhenran Jiang	Predicting Potential Ligands for Orphan GPCRs Based on the Improved Laplacian Regularized Least Squares Method.	ICIC (3)	2014	DBLP DOI BibTeX RDF
26	Martha Ivón Cárdenas, Alfredo Vellido, Caroline König, René Alquézar, Jesús Giraldo	Exploratory Visualization of Misclassified GPCRs from their transformed unaligned sequences using manifold learning techniques.	IWBBIO	2014	DBLP BibTeX RDF
26	Ákos Tarcsay, Gábor Paragi, Márton Vass, Balázs Jójárt, Ferenc Bogár, György M. Keserü	The Impact of Molecular Dynamics Sampling on the Performance of Virtual Screening against GPCRs.	J. Chem. Inf. Model.	2013	DBLP DOI BibTeX RDF
26	Alexios Koutsoukas, Rubben Torella, George Drakakis, Andreas Bender 0002, Robert C. Glen	Relating GPCRs pharmacological space based on ligands chemical similarities.	J. Cheminformatics	2013	DBLP DOI BibTeX RDF
26	Caroline König, Raúl Cruz-Barbosa, René Alquézar, Alfredo Vellido	SVM-Based Classification of Class C GPCRs from Alignment-Free Physicochemical Transformations of Their Sequences.	ICIAP Workshops	2013	DBLP DOI BibTeX RDF
26	Jerez A. Te, Maoqing Dong, Laurence J. Miller, Andrew J. Bordner	Predicting the effects of amino acid replacements in peptide hormones on their binding affinities for class B GPCRs and application to the design of secretin receptor antagonists.	J. Comput. Aided Mol. Des.	2012	DBLP DOI BibTeX RDF
26	Christian Tyrchan, Sorel Muresan	How often do follow-on activities occur - trends seen in a patent database for GPCRs.	J. Cheminformatics	2012	DBLP DOI BibTeX RDF
26	Ahmet Sinan Yavuz, Bugra Ozer, Osman Ugur Sezerman	Pattern Recognition for Subfamily Level Classification of GPCRs Using Motif Distillation and Distinguishing Power Evaluation.	PRIB	2012	DBLP DOI BibTeX RDF
26	Murat Can Cobanoglu, Yücel Saygin, Osman Ugur Sezerman	Classification of GPCRs Using Family Specific Motifs.	IEEE ACM Trans. Comput. Biol. Bioinform.	2011	DBLP DOI BibTeX RDF
26	Marijn P. A. Sanders, Wilco W. M. Fleuren, Stefan Verhoeven, Sven van den Beld, Wynand Alkema, Jacob de Vlieg, Jan P. G. Klomp	ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
26	Marijn P. A. Sanders, Stefan Verhoeven, Chris de Graaf, Luc Roumen, Bas Vroling, Sander B. Nabuurs, Jacob de Vlieg, Jan P. G. Klomp	Snooker: A Structure-Based Pharmacophore Generation Tool Applied to Class A GPCRs.	J. Chem. Inf. Model.	2011	DBLP DOI BibTeX RDF
26	Supriyo Bhattacharya, Govindan Subramanian, Spencer Hall, Jianping Lin, Abdelazize Laoui, Nagarajan Vaidehi	Allosteric antagonist binding sites in class B GPCRs: corticotropin receptor 1.	J. Comput. Aided Mol. Des.	2010	DBLP DOI BibTeX RDF
26	Eelke van der Horst, Julio E. Peironcely, Adriaan P. IJzerman, Margot W. Beukers, Jonathan Robert Lane, Herman W. T. van Vlijmen, Michael T. M. Emmerich, Yasushi Okuno, Andreas Bender 0002	A novel chemogenomics analysis of G protein-coupled receptors (GPCRs) and their ligands: a potential strategy for receptor de-orphanization.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
26	Venkata P. Satagopam, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider 0002, Stavros J. Hamodrakas	GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques.	Database J. Biol. Databases Curation	2010	DBLP DOI BibTeX RDF
26	Sonal Shrivastava, K. R. Pardasani, M. M. Malik	SVM Model for Identification of human GPCRs	CoRR	2010	DBLP BibTeX RDF
26	Anwar Rayan, Mohamed Hegaze, Jamal Raiyn	How Much Bovine Rhodopsin Crystal Structure is Useful for Modeling Human GPCRs? - ß2-Adrenergic Receptor as a Test Case.	BIOSIGNALS	2009	DBLP BibTeX RDF
26	Laurent Jacob, Brice Hoffmann, Véronique Stoven, Jean-Philippe Vert	Virtual screening of GPCRs: An in silico chemogenomics approach.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
26	Margarita C. Theodoropoulou, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas	gpDB: a database of GPCRs, G-proteins, effectors and their interactions.	Bioinform.	2008	DBLP DOI BibTeX RDF
26	Masha Y. Niv, Lucy Skrabanek, Marta Filizola, Harel Weinstein	Modeling activated states of GPCRs: the rhodopsin template.	J. Comput. Aided Mol. Des.	2007	DBLP DOI BibTeX RDF
26	Francesca Fanelli, Pier Giuseppe De Benedetti	Inactive and active states and supramolecular organization of GPCRs: insights from computational modeling.	J. Comput. Aided Mol. Des.	2006	DBLP DOI BibTeX RDF
26	Masha Y. Niv, Lucy Skrabanek, Marta Filizola, Harel Weinstein	Modeling activated states of GPCRs: the rhodopsin template.	J. Comput. Aided Mol. Des.	2006	DBLP DOI BibTeX RDF
26	Nikolaos G. Sgourakis, Pantelis G. Bagos, Panagiotis K. Papasaikas, Stavros J. Hamodrakas	A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models.	BMC Bioinform.	2005	DBLP DOI BibTeX RDF
26	Nikolaos G. Sgourakis, Pantelis G. Bagos, Stavros J. Hamodrakas	Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks.	Bioinform.	2005	DBLP DOI BibTeX RDF
26	Antigoni L. Elefsinioti, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas	A database for G proteins and their interaction with GPCRs.	BMC Bioinform.	2004	DBLP DOI BibTeX RDF
26	Yasuhito Inoue, Masami Ikeda, Toshio Shimizu	Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern.	Comput. Biol. Chem.	2004	DBLP DOI BibTeX RDF
26	Ron Shigeta, Melissa S. Cline, Guoying Liu, Michael A. Siani-Rose	GPCR-GRAPA-LIB-a refined library of hidden Markov Models for annotating GPCRs.	Bioinform.	2003	DBLP DOI BibTeX RDF
22	Kimberly A. Reynolds, Vsevolod Katritch, Ruben Abagyan	Identifying conformational changes of the beta2 adrenoceptor that enable accurate prediction of ligand/receptor interactions and screening for GPCR modulators.	J. Comput. Aided Mol. Des.	2009	DBLP DOI BibTeX RDF	?2 Adrenoceptor, Agonist, Virtual ligand screening, GPCR, MMFF, Homology model, G-protein coupled receptor
22	Xing-Ming Zhao, De-Shuang Huang, Shiwu Zhang, Yiu-ming Cheung	Classifying G-Protein Coupled Receptors with Hydropathy Blocks and Support Vector Machines.	ICIC (3)	2006	DBLP DOI BibTeX RDF
22	Ying Huang, Yanda Li	Classifying G-protein Coupled Receptors with Support Vector Machine.	ISNN (2)	2004	DBLP DOI BibTeX RDF
22	Elena V. Samsonova, Thomas Bäck, Margot W. Beukers, Adriaan P. IJzerman, Joost N. Kok	Combining and Comparing Cluster Methods in a Receptor Database.	IDA	2003	DBLP DOI BibTeX RDF