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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 42 occurrences of 33 keywords
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Results
Found 57 publication records. Showing 57 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
162 | John Paul Walters, Rohan Darole, Vipin Chaudhary |
Improving MPI-HMMER's scalability with parallel I/O. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 23rd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2009, Rome, Italy, May 23-29, 2009, pp. 1-11, 2009, IEEE. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
112 | Yanteng Sun, Peng Li 0031, Guochang Gu, Yuan Wen, Yuan Liu, Dong Liu |
HMMer acceleration using systolic array based reconfigurable architecture. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FPGA ![In: Proceedings of the ACM/SIGDA 17th International Symposium on Field Programmable Gate Arrays, FPGA 2009, Monterey, California, USA, February 22-24, 2009, pp. 282, 2009, ACM, 978-1-60558-410-2. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
reconfigurable., systolic array, acceleration, hmmer |
104 | Bhanu Rekapalli, Christian Halloy, Igor B. Zhulin |
HSP-HMMER: a tool for protein domain identification on a large scale. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SAC ![In: Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), Honolulu, Hawaii, USA, March 9-12, 2009, pp. 766-770, 2009, ACM, 978-1-60558-166-8. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
104 | Jizhu Lu, Michael Perrone, Kursad Albayraktaroglu, Manoj Franklin |
HMMer-Cell: High Performance Protein Profile Searching on the Cell/B.E. Processor. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISPASS ![In: IEEE International Symposium on Performance Analysis of Systems and Software, ISPASS 2008, April 20-22, 2008, Austin, Texas, USA, Proceedings, pp. 223-232, 2008, IEEE Computer Society, 978-1-4244-2232-6. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
92 | John Paul Walters, Xiandong Meng, Vipin Chaudhary, Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt, Darran Nathan, Joseph I. Landman |
MPI-HMMER-Boost: Distributed FPGA Acceleration. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. VLSI Signal Process. ![In: J. VLSI Signal Process. 48(3), pp. 223-238, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
FPGA, VLSI, MPI, database searching, profile hidden markov models, HMMER |
85 | Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan Liu, Dong Liu |
Accelerating HMMer on FPGAs using systolic array based architecture. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 23rd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2009, Rome, Italy, May 23-29, 2009, pp. 1-8, 2009, IEEE. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
85 | Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt |
High Performance Database Searching with HMMer on FPGAs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA, pp. 1-7, 2007, IEEE. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
85 | John Paul Walters, Bashar Qudah, Vipin Chaudhary |
Accelerating the HMMER Sequence Analysis Suite Using Conventional Processors. ![Search on Bibsonomy](Pics/bibsonomy.png) |
AINA (1) ![In: 20th International Conference on Advanced Information Networking and Applications (AINA 2006), 18-20 April 2006, Vienna, Austria, pp. 289-294, 2006, IEEE Computer Society, 0-7695-2466-4. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
84 | Karl Jiang, Oystein Thorsen, Amanda E. Peters, Brian E. Smith, Carlos P. Sosa |
An Efficient Parallel Implementation of the Hidden Markov Methods for Genomic Sequence-Search on a Massively Parallel System. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE Trans. Parallel Distributed Syst. ![In: IEEE Trans. Parallel Distributed Syst. 19(1), pp. 15-23, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
multiple master parallelization, genomic sequence-search, Hidden Markov models, bioinformatics, parallel implementation, massively parallel systems, HMMER |
66 | Joseph I. Landman, Joydeep Ray, John Paul Walters |
Accelerating HMMer searches on Opteron processors with minimally invasive recoding. ![Search on Bibsonomy](Pics/bibsonomy.png) |
AINA (2) ![In: 20th International Conference on Advanced Information Networking and Applications (AINA 2006), 18-20 April 2006, Vienna, Austria, pp. 628-636, 2006, IEEE Computer Society, 0-7695-2466-4. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
58 | Ben Wun, Jeremy Buhler, Patrick Crowley |
Exploiting Coarse-Grained Parallelism to Accelerate Protein Motif Finding with a Network Processor. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE PACT ![In: 14th International Conference on Parallel Architectures and Compilation Techniques (PACT 2005), 17-21 September 2005, St. Louis, MO, USA, pp. 173-184, 2005, IEEE Computer Society, 0-7695-2429-X. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
46 | John Paul Walters, Vidyananth Balu, Suryaprakash Kompalli, Vipin Chaudhary |
Evaluating the use of GPUs in liver image segmentation and HMMER database searches. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 23rd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2009, Rome, Italy, May 23-29, 2009, pp. 1-12, 2009, IEEE. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
46 | Avery Ching, Wu-chun Feng, Heshan Lin, Xiaosong Ma, Alok N. Choudhary |
Exploring I/O Strategies for Parallel Sequence-Search Tools with S3aSim. ![Search on Bibsonomy](Pics/bibsonomy.png) |
HPDC ![In: Proceedings of the 15th IEEE International Symposium on High Performance Distributed Computing, HPDC-15, Paris, France, June 19-23, 2006, pp. 229-240, 2006, IEEE, 1-4244-0307-3. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
parallel HMMer tool, parallel I/O strategy, parallel sequence-search tool, S3aSim framework, computational biologist, sequence database segmentation, master-writing strategy, worker-writing strategy, mpiBLAST tool, pioBLAST tool, search algorithm, parallel file system |
27 | Martin Larralde, Georg Zeller |
PyHMMER: a Python library binding to HMMER for efficient sequence analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(5), May 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
27 | Simon C. Potter, Aurelien Luciani, Sean R. Eddy, Young Mi Park, Rodrigo Lopez, Robert D. Finn |
HMMER web server: 2018 update. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 46(Webserver-Issue), pp. W200-W204, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
27 | Hanyu Jiang, Narayan Ganesan |
CUDAMPF: a multi-tiered parallel framework for accelerating protein sequence search in HMMER on CUDA-enabled GPU. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 17, pp. 106, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
27 | Naeem Abbas, Steven Derrien, Sanjay V. Rajopadhye, Patrice Quinton, Alexandre Cornu, Dominique Lavenier |
Combining execution pipelines to improve parallel implementation of HMMER on FPGA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Microprocess. Microsystems ![In: Microprocess. Microsystems 39(7), pp. 457-470, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
27 | Robert D. Finn, Jody Clements, William Arndt, Benjamin L. Miller, Travis J. Wheeler, Fabian Schreiber, Alex Bateman, Sean R. Eddy |
HMMER web server: 2015 update. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 43(Webserver-Issue), pp. W30-W38, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
27 | Hanyu Jiang, Narayan Ganesan |
Fine-Grained Acceleration of HMMER 3.0 via Architecture-Aware Optimization on Massively Parallel Processors. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS Workshops ![In: 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, IPDPS 2015, Hyderabad, India, May 25-29, 2015, pp. 375-383, 2015, IEEE Computer Society, 978-1-4673-7684-6. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
27 | Miguel Ferreira, Nuno Roma, Luís M. S. Russo |
Cache-Oblivious parallel SIMD Viterbi decoding for sequence search in HMMER. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 15, pp. 165, 2014. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
|
27 | Samuel Ferraz, Nahri Moreano |
Evaluating Optimization Strategies for HMMer Acceleration on GPU. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICPADS ![In: 19th IEEE International Conference on Parallel and Distributed Systems, ICPADS 2013, Seoul, Korea, December 15-18, 2013, pp. 59-68, 2013, IEEE Computer Society, 978-1-4799-2081-5. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
|
27 | Mohd Nazrin Md. Isa, Khaled Benkrid, Thomas Clayton |
A novel efficient FPGA architecture for HMMER acceleration. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ReConFig ![In: 2012 International Conference on Reconfigurable Computing and FPGAs, ReConFig 2012, Cancun, Mexico, December 5-7, 2012, pp. 1-6, 2012, IEEE, 978-1-4673-2919-4. The full citation details ...](Pics/full.jpeg) |
2012 |
DBLP DOI BibTeX RDF |
|
27 | Xiaoqiang Li, Wenting Han, Gu Liu, Hong An, Mu Xu, Wei Zhou, Qi Li 0034 |
A Speculative HMMER Search Implementation on GPU. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS Workshops ![In: 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, IPDPS 2012, Shanghai, China, May 21-25, 2012, pp. 735-741, 2012, IEEE Computer Society, 978-1-4673-0974-5. The full citation details ...](Pics/full.jpeg) |
2012 |
DBLP DOI BibTeX RDF |
|
27 | Robert D. Finn, Jody Clements, Sean R. Eddy |
HMMER web server: interactive sequence similarity searching. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 39(Web-Server-Issue), pp. 29-37, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
27 | Sebastián Isaza, Ernst Houtgast, Georgi Gaydadjiev |
HMMER Performance Model for Multicore Architectures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
DSD ![In: 14th Euromicro Conference on Digital System Design, Architectures, Methods and Tools, DSD 2011, August 31 - September 2, 2011, Oulu, Finland, pp. 257-261, 2011, IEEE Computer Society, 978-1-4577-1048-3. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
27 | Saddam Quirem, Fahian Ahmed, Byeong Kil Lee |
CUDA acceleration of P7Viterbi algorithm in HMMER 3.0. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPCCC ![In: 30th IEEE International Performance Computing and Communications Conference, IPCCC 2011, Orlando, Florida, USA, November 17-19, 2011, pp. 1-2, 2011, IEEE Computer Society, 978-1-4673-0010-0. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
27 | Toyokazu Takagi, Tsutomu Maruyama |
Accelerating HMMER search using FPGA Grid. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PARCO ![In: Applications, Tools and Techniques on the Road to Exascale Computing, Proceedings of the conference ParCo 2011, 31 August - 3 September 2011, Ghent, Belgium, pp. 587-594, 2011, IOS Press, 978-1-61499-040-6. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
27 | Sebastián Isaza, Ernst Houtgast, Friman Sánchez, Alex Ramírez, Georgi Gaydadjiev |
Scaling HMMER Performance on Multicore Architectures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CISIS ![In: International Conference on Complex, Intelligent and Software Intensive Systems, CISIS 2011, June 30 - July 2, 2011, Korean Bible University, Seoul, Korea, pp. 618-623, 2011, IEEE Computer Society, 978-0-7695-4373-4. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
27 | Enric Tejedor, Rosa M. Badia, Romina Royo, Josep Lluis Gelpí |
Enabling HMMER for the Grid with COMP Superscalar. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICCS ![In: Conceptual Structures: From Information to Intelligence, 18th International Conference on Conceptual Structures, ICCS 2010, Kuching, Sarawak, Malaysia, July 26-30, 2010. Proceedings, pp. 2629-2638, 2010, Springer, 978-3-642-14196-6. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
27 | Steven Derrien, Patrice Quinton |
Hardware Acceleration of HMMER on FPGAs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Signal Process. Syst. ![In: J. Signal Process. Syst. 58(1), pp. 53-67, 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
27 | Juan Fernando Eusse Giraldo, Nahri Moreano, Ricardo Pezzuol Jacobi, Alba Cristina Magalhaes Alves de Melo |
A HMMER hardware accelerator using divergences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
DATE ![In: Design, Automation and Test in Europe, DATE 2010, Dresden, Germany, March 8-12, 2010, pp. 405-410, 2010, IEEE Computer Society, 978-1-4244-7054-9. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
27 | Naeem Abbas, Steven Derrien, Sanjay V. Rajopadhye, Patrice Quinton |
Accelerating HMMER on FPGA using parallel prefixes and reductions. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FPT ![In: Proceedings of the International Conference on Field-Programmable Technology, FPT 2010, 8-10 December 2010, Tsinghua University, Beijing, China, pp. 37-44, 2010, IEEE, 978-1-4244-8981-7. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
27 | Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhler, Michela Taufer |
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BCB ![In: Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, BCB 2010, Niagara Falls, NY, USA, August 2-4, 2010, pp. 418-421, 2010, ACM, 978-1-4503-0438-2. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
27 | Toyokazu Takagi, Tsutomu Maruyama |
Accelerating HMMER search using FPGA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FPL ![In: 19th International Conference on Field Programmable Logic and Applications, FPL 2009, August 31 - September 2, 2009, Prague, Czech Republic, pp. 332-337, 2009, IEEE, 978-1-4244-3892-1. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
27 | Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt |
Integrating FPGA acceleration into HMMer. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Parallel Comput. ![In: Parallel Comput. 34(11), pp. 681-691, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
27 | John Paul Walters, Joseph I. Landman, Vipin Chaudhary |
Optimized Cluster-Enabled HMMER Searches. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Grid Computing for Bioinformatics and Computational Biology ![In: Grid Computing for Bioinformatics and Computational Biology, pp. 51-70, 2007, Wiley, 978-0-471-78409-8. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
27 | Steven Derrien, Patrice Quinton |
Parallelizing HMMER for Hardware Acceleration on FPGAs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ASAP ![In: IEEE International Conference on Application-Specific Systems, Architectures and Processors, ASAP 2007, Montréal, Québec, Canada, July 8-11, 2007, pp. 10-17, 2007, IEEE Computer Society, 978-1-4244-1026-2. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
27 | Markus Wistrand, Erik L. L. Sonnhammer |
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 6, pp. 99, 2005. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
27 | Madelaine Marchin, Paul T. Kelly, Jianwen Fang |
Tracker: continuous HMMER and BLAST searching. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 21(3), pp. 388-389, 2005. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
27 | Daniel Reiter Horn, Mike Houston, Pat Hanrahan |
ClawHMMER: A Streaming HMMer-Search Implementation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SC ![In: Proceedings of the ACM/IEEE SC2005 Conference on High Performance Networking and Computing, November 12-18, 2005, Seattle, WA, USA, CD-Rom, pp. 11, 2005, IEEE Computer Society, 1-59593-061-2. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
Bio Science, Brook, Programmable Graphics Hardware, GPU Computing, Stream Computing, Data Parallel Computing |
27 | Yasuyo Kofune, Takahiro Koita, Akira Fukuda |
Performance Evaluation of MPI-HMMER on the OBIGrid. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PDPTA ![In: Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, PDPTA '04, June 21-24, 2004, Las Vegas, Nevada, USA, Volume 1, pp. 476-480, 2004, CSREA Press, 1-892512-23-8. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP BibTeX RDF |
|
27 | Zemin Zhang, William I. Wood |
A profile hidden Markov model for signal peptides generated by HMMER. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 19(2), pp. 307-308, 2003. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
|
27 | Luis Sánchez-Pulido, Yan P. Yuan, Miguel A. Andrade, Peer Bork |
NAIL-Network Analysis Interface for Linking HMMER results. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 16(7), pp. 656-657, 2000. The full citation details ...](Pics/full.jpeg) |
2000 |
DBLP DOI BibTeX RDF |
|
27 | Marcella A. McClure, Chris Smith, Pete Elton |
Parameterization Studies for the SAM and HMMER Methods of Hidden Markov Model Generation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISMB ![In: Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996, pp. 155-164, 1996, AAAI, 1-57735-002-2. The full citation details ...](Pics/full.jpeg) |
1996 |
DBLP BibTeX RDF |
|
27 | Stuart King, Yanni Sun, James R. Cole, Sakti Pramanik |
BLAST Tree: Fast Filtering for Genomic Sequence Classification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: 10th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2010, Philadelphia, Pennsylvania, USA, May 31-June 3 2010, pp. 58-65, 2010, IEEE Computer Society, 978-0-7695-4083-2. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
component, Bioinformatics, Blast, Homology, Metagenomic, Trie, Hmmer |
27 | Rahul P. Maddimsetty, Jeremy Buhler, Roger D. Chamberlain, Mark A. Franklin, Brandon Harris |
Accelerator design for protein sequence HMM search. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICS ![In: Proceedings of the 20th Annual International Conference on Supercomputing, ICS 2006, Cairns, Queensland, Australia, June 28 - July 01, 2006, pp. 288-296, 2006, ACM, 1-59593-282-8. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
protein motif, hidden Markov model, HMMER |
27 | Mark McCallister, Michael Kutyna, Daniel B. Delgado |
Implementing high-performance grid computing in student computer labs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SIGUCCS ![In: Proceedings of the 32nd Annual ACM SIGUCCS Conference on User Services 2004, Baltimore, MD, USA, October 10-13, 2004, pp. 360, 2004, ACM, 1-58113-869-5. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
cluster, parallel, grid, BLAST, computer lab, HMMER |
19 | Fabiana F. Araújo, Ângela M. A. Pinheiro, Kaio M. Farias, Bernadette Farias Lóscio, Diana M. Oliveira |
FlagelLink: a decision support system for distributed flagellar data using data warehouse. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SAC ![In: Proceedings of the 2008 ACM Symposium on Applied Computing (SAC), Fortaleza, Ceara, Brazil, March 16-20, 2008, pp. 1268-1272, 2008, ACM, 978-1-59593-753-7. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
flagellar ontology, data integration, bioinformatics, decision support system, data warehouse |
19 | Robert Henschel, Matthias S. Müller |
I/O Induced Scalability Limits of Bioinformatics Applications. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2007, October 14-17, 2007, Harvard Medical School, Boston, MA, USA, pp. 609-613, 2007, IEEE Computer Society, 978-1-4244-1509-0. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
19 | Denise Fukumi Tsunoda, Heitor Silvério Lopes |
Automatic motif discovery in an enzyme database using a genetic algorithm-based approach. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Soft Comput. ![In: Soft Comput. 10(4), pp. 325-330, 2006. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
19 | Bouchra Bouqata, Christopher D. Carothers, Boleslaw K. Szymanski, Mohammed Javeed Zaki |
VOGUE: A Novel Variable Order-Gap State Machine for Modeling Sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PKDD ![In: Knowledge Discovery in Databases: PKDD 2006, 10th European Conference on Principles and Practice of Knowledge Discovery in Databases, Berlin, Germany, September 18-22, 2006, Proceedings, pp. 42-54, 2006, Springer, 3-540-45374-1. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
19 | Anton Bezuglov, Juan E. Vargas |
Simulated Annealing Algorithm with Biased Neighborhood Distribution for Training Profile Models. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISMIS ![In: Foundations of Intelligent Systems, 16th International Symposium, ISMIS 2006, Bari, Italy, September 27-29, 2006, Proceedings, pp. 642-651, 2006, Springer, 3-540-45764-X. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
19 | Thomas Rattei, Mathias C. Walter, Roland Arnold, David P. Anderson, Hans-Werner Mewes |
Using Public Resource Computing and Systematic Pre-calculation for Large Scale Sequence Analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
GCCB ![In: Distributed, High-Performance and Grid Computing in Computational Biology , International Workshop, GCCB 2006, Eilat, Israel, January 21, 2007, Proceeding, pp. 11-18, 2006, Springer, 3-540-69841-8. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
sequence similarity, protein homology, public resource computing, grid computing, sequence analysis, protein domain |
19 | Vipin Sachdeva, Michael Kistler, Evan Speight |
Poster reception - Pairwise alignments on the cell processor. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SC ![In: Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, November 11-17, 2006, Tampa, FL, USA, pp. 171, 2006, ACM Press, 0-7695-2700-0. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
19 | Yan Liu 0002, Jaime G. Carbonell, Peter Weigele, Vanathi Gopalakrishnan |
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings, pp. 408-422, 2005, Springer, 3-540-25866-3. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
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19 | Fabiano Pazzini, Fernanda Oliveira, Jorge A. Guimarães, Hermes Luís Neubauer de Amorim |
Prediction of Myotoxic and Neurotoxic Activities in Phospholipases A2 from Primary Sequence Analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BSB ![In: Advances in Bioinformatics and Computational Biology, Brazilian Symposium on Bioinformatics, BSB 2005, Sao Leopoldo, Brazil, July 27-29, 2005, Proceedings, pp. 194-197, 2005, Springer, 3-540-28008-1. The full citation details ...](Pics/full.jpeg) |
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19 | Xing-Ming Zhao, De-Shuang Huang, Yiu-ming Cheung, Hong-Qiang Wang, Xin Huang |
A Novel Hybrid GA/SVM System for Protein Sequences Classification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IDEAL ![In: Intelligent Data Engineering and Automated Learning - IDEAL 2004, 5th International Conference, Exeter, UK, August 25-27, 2004, Proceedings, pp. 11-16, 2004, Springer, 3-540-22881-0. The full citation details ...](Pics/full.jpeg) |
2004 |
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