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Publication years (Num. hits)
1996-2004 (21) 2005-2007 (20) 2008-2011 (15) 2012-2021 (17) 2022-2023 (6)
Publication types (Num. hits)
article(46) incollection(2) inproceedings(31)
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The graphs summarize 40 occurrences of 29 keywords

Results
Found 79 publication records. Showing 79 according to the selection in the facets
Hits ? Authors Title Venue Year Link Author keywords
73Maricel Kann, Richard A. Goldstein Optimizing for success: a new score function for distantly related protein sequence comparison. Search on Bibsonomy RECOMB The full citation details ... 2000 DBLP  DOI  BibTeX  RDF
55Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna Structural Alignment of Pseudoknotted RNA. Search on Bibsonomy RECOMB The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
49Arvind K. Bansal, Christopher Woolverton Applying Automatically Derived Gene-Groups to Automatically Predict and Refine Metabolic Pathways. Search on Bibsonomy IEEE Trans. Knowl. Data Eng. The full citation details ... 2003 DBLP  DOI  BibTeX  RDF enzymes, gene-groups, microbes, operons, orthologs, pathogenicity, Automation, homologs, drug-discovery, pathway, metabolic pathway, bacteria
44Guillaume Blin, Annie Chateau, Cédric Chauve, Yannick Gingras Inferring Positional Homologs with Common Intervals of Sequences. Search on Bibsonomy Comparative Genomics The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
44Guillaume Bourque, Yasmine Yacef, Nadia El-Mabrouk Maximizing Synteny Blocks to Identify Ancestral Homologs. Search on Bibsonomy Comparative Genomics The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
44Yuheng Li, Mario Lauria, Ralf Bundschuh Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches. Search on Bibsonomy BIBE The full citation details ... 2005 DBLP  DOI  BibTeX  RDF PSI-BLAST, suboptimal alignment, sequence alignment, hybrid algorithm, forward-backward algorithm
37Shaojie Zhang, Brian Haas, Eleazar Eskin, Vineet Bafna Searching Genomes for Noncoding RNA Using FastR. Search on Bibsonomy IEEE ACM Trans. Comput. Biol. Bioinform. The full citation details ... 2005 DBLP  DOI  BibTeX  RDF Noncoding RNA, riboswitch, bacterial genome, filtration, database search
37Rose Hoberman, David Sankoff, Dannie Durand The Statistical Significance of Max-Gap Clusters. Search on Bibsonomy Comparative Genomics The full citation details ... 2004 DBLP  DOI  BibTeX  RDF
37Vineet Bafna, Shaojie Zhang FastR: Fast Database Search Tool for Non-Coding RNA. Search on Bibsonomy CSB The full citation details ... 2004 DBLP  DOI  BibTeX  RDF non-coding RNA genes, dynamic programming, sequence alignment, RNA, filtration, database search
37Hsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Cheng-Yan Kao, Jorng-Tzong Horng A Data Mining Method to Predict Transcriptional Regulatory Sites Based on Differentially Expressed Genes in Human Genome. Search on Bibsonomy BIBE The full citation details ... 2003 DBLP  DOI  BibTeX  RDF regulatory site, data mining gene expression, transcription factor
37Parvin Mousavi, Sidney S. Fels, Rabab Kreidieh Ward, Peter M. Lansdorp Classification of homologous human chromosomes using mutual information maximization. Search on Bibsonomy ICIP (2) The full citation details ... 2001 DBLP  DOI  BibTeX  RDF
31Ankit Agrawal 0001, Xiaoqiu Huang 0001 Pairwise statistical significance of local sequence alignment using multiple parameter sets. Search on Bibsonomy DTMBIO The full citation details ... 2008 DBLP  DOI  BibTeX  RDF database statistical significance, pairwise statistical significance, sequence alignment, homologs, parameter set
31Ankit Agrawal 0001, Volker Brendel, Xiaoqiu Huang 0001 Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences. Search on Bibsonomy ISBRA The full citation details ... 2008 DBLP  DOI  BibTeX  RDF Database statistical significance, Pairwise local alignment, Pairwise statistical significance, Homologs
26Kenneth J. Bures Cracking PURPLE: the identification of homologs in the cryptanalysis of the Angooki Taipu B cipher machine. Search on Bibsonomy Cryptologia The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
26Sumit Mukherjee, Matan Drory Retwitzer, Sara M. Hubbell, Michelle M. Meyer, Danny Barash A computational approach for the identification of distant homologs of bacterial riboswitches based on inverse RNA folding. Search on Bibsonomy Briefings Bioinform. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
26Sizhen Li, Ning Dai, He Zhang, Apoorv Malik, David H. Mathews, Liang Huang 0001 LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs. Search on Bibsonomy CoRR The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
26Tatsuya Yoshizawa, Shoichi Ishida, Tomohiro Sato, Masateru Ohta, Teruki Honma, Kei Terayama Selective Inhibitor Design for Kinase Homologs Using Multiobjective Monte Carlo Tree Search. Search on Bibsonomy J. Chem. Inf. Model. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
26Neeladri Sen, Ivan Anishchenko, Nicola Bordin, Ian Sillitoe, Sameer Velankar, David Baker, Christine A. Orengo Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs. Search on Bibsonomy Briefings Bioinform. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
26Jayanta Kumar Das, Christian Heryakusuma, Dwi Susanti, Pabitra Pal Choudhury, Biswarup Mukhopadhyay Reduced protein sequence patterns in identifying key structural elements of dissimilatory sulfite reductase homologs. Search on Bibsonomy Comput. Biol. Chem. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
26Chloé Quignot, Guillaume Postic, Hélène Bret, Julien Rey, Pierre Granger, Samuel Murail, Pablo Chacón, Jessica Andreani, Pierre Tufféry, Raphaël Guérois InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based contact maps. Search on Bibsonomy Nucleic Acids Res. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
26Sizhen Li, He Zhang, Liang Zhang, Kaibo Liu, Boxiang Liu, David H. Mathews, Liang Huang 0001 LinearTurboFold: Linear-time global prediction of conserved structures for RNA homologs with applications to SARS-CoV-2. Search on Bibsonomy Proc. Natl. Acad. Sci. USA The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
26Adrian C. D. Fuchs, Vikram Alva, Andrei N. Lupas An astonishing wealth of new proteasome homologs. Search on Bibsonomy Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
26Richard A. Schäfer, Steffen Lott, Jens Georg, Björn A. Grüning, Wolfgang R. Hess, Björn Voß GLASSgo in Galaxy: high-throughput, reproducible and easy-to-integrate prediction of sRNA homologs. Search on Bibsonomy Bioinform. The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
26Archana Pal Negi, Ratnesh Singh, Anupma Sharma, Vishal Singh Negi Insights into high mobility group A (HMGA) proteins from Poaceae family: An in silico approach for studying homologs. Search on Bibsonomy Comput. Biol. Chem. The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
26William R. Pearson Identification of Homologs. Search on Bibsonomy Encyclopedia of Bioinformatics and Computational Biology (3) The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
26David Sankoff, Chunfang Zheng, Yue Zhang, Joao Meidanis, Eric Lyons 0002, Haibao Tang Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics. Search on Bibsonomy IEEE ACM Trans. Comput. Biol. Bioinform. The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
26P. Chellapandi, R. Prathiviraj, A. Prisilla Deciphering structure, function and mechanism of Plasmodium IspD homologs from their evolutionary imprints. Search on Bibsonomy J. Comput. Aided Mol. Des. The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
26Nelson Gil, András Fiser The choice of sequence homologs included in multiple sequence alignments has a dramatic impact on evolutionary conservation analysis. Search on Bibsonomy Bioinform. The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
26Siavash Sheikhizadeh, Dick de Ridder, M. Eric Schranz, Sandra Smit Efficient inference of homologs in large eukaryotic pan-proteomes. Search on Bibsonomy BMC Bioinform. The full citation details ... 2018 DBLP  DOI  BibTeX  RDF
26Pablo Mier, Antonio J. Pérez-Pulido, Miguel A. Andrade-Navarro Automated selection of homologs to track the evolutionary history of proteins. Search on Bibsonomy BMC Bioinform. The full citation details ... 2018 DBLP  DOI  BibTeX  RDF
26Christian D. Schenkelberg, Christopher Bystroff Protein backbone ensemble generation explores the local structural space of unseen natural homologs. Search on Bibsonomy Bioinform. The full citation details ... 2016 DBLP  DOI  BibTeX  RDF
26Beibei Wang, Joshua Francis, Monika Sharma, Sean M. Law, Alexander V. Predeus, Michael Feig Long-Range Signaling in MutS and MSH Homologs via Switching of Dynamic Communication Pathways. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2016 DBLP  DOI  BibTeX  RDF
26Qingzhen Hou, Bas E. Dutilh, Martijn A. Huynen, Jaap Heringa, K. Anton Feenstra Sequence specificity between interacting and non-interacting homologs identifies interface residues - a homodimer and monomer use case. Search on Bibsonomy BMC Bioinform. The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
26Svenja Alter, Kai Christian Bader, Manuel Spannagl, Yu Wang 0008, Eva Bauer, Chris-Carolin Schön, Klaus F. X. Mayer DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species. Search on Bibsonomy Database J. Biol. Databases Curation The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
26Simone Zorzan, Erika Lorenzetto, Michele Ettorre, Valeria Pontelli, Carlo Laudanna, Mario Buffelli HOMECAT: consensus homologs mapping for interspecific knowledge transfer and functional genomic data integration. Search on Bibsonomy Bioinform. The full citation details ... 2013 DBLP  DOI  BibTeX  RDF
26Melvin Zhang, Hon Wai Leong BBH-LS: an algorithm for computing positional homologs using sequence and gene context similarity. Search on Bibsonomy BMC Syst. Biol. The full citation details ... 2012 DBLP  DOI  BibTeX  RDF
26Maria D. Chikina, Olga G. Troyanskaya Accurate Quantification of Functional Analogy among Close Homologs. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2011 DBLP  DOI  BibTeX  RDF
26Andrew Kuziemko, Barry Honig, Donald Petrey Using Structure to Explore the Sequence Alignment Space of Remote Homologs. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2011 DBLP  DOI  BibTeX  RDF
26Gaurav Sharma 0001, Arif Ozgun Harmanci, David H. Mathews Iterative estimation of structures of multiple RNA homologs: Turbofold. Search on Bibsonomy ICASSP The full citation details ... 2011 DBLP  DOI  BibTeX  RDF
26Weilong Hao OrgConv: detection of gene conversion using consensus sequences and its application in plant mitochondrial and chloroplast homologs. Search on Bibsonomy BMC Bioinform. The full citation details ... 2010 DBLP  DOI  BibTeX  RDF
26Like Fokkens, Sandra M. C. Botelho, Jos Boekhorst, Berend Snel Enrichment of homologs in insignificant BLAST hits by co-complex network alignment. Search on Bibsonomy BMC Bioinform. The full citation details ... 2010 DBLP  DOI  BibTeX  RDF
26Ganesan Pugalenthi, E. Ke Tang, Ponnuthurai N. Suganthan, Saikat Chakrabarti 0001 Identification of structurally conserved residues of proteins in absence of structural homologs using neural network ensemble. Search on Bibsonomy Bioinform. The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
26Anoop Kumar, Lenore Cowen Augmented training of hidden Markov models to recognize remote homologs via simulated evolution. Search on Bibsonomy Bioinform. The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
26Vesselin Baev, Evelina Daskalova, Ivan Nikiforov Minkov Computational identification of novel microRNA homologs in the chimpanzee genome. Search on Bibsonomy Comput. Biol. Chem. The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
26Gérard Ramstein, Nicolas Beaume, Yannick Jacques Detection of Remote Protein Homologs Using Social Programming. Search on Bibsonomy Foundations of Computational Intelligence (4) The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
26Usman Roshan, Satish Chikkagoudar, Dennis R. Livesay Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities. Search on Bibsonomy BMC Bioinform. The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
26Jos Boekhorst, Berend Snel Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties. Search on Bibsonomy BMC Bioinform. The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
26Masako Ogura, J. Christian Perez, Peer R. E. Mittl, Hae-Kyung Lee, Geidrius Dailide, Shumin Tan, Yoshiyuki Ito, Ousman Secka, Daiva Dailidiene, Kalyani Putty, Douglas E. Berg, Awdhesh Kalia Helicobacter pylori Evolution: Lineage- Specific Adaptations in Homologs of Eukaryotic Sel1-Like Genes. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
26Tzu-Hao Chang, Hsien-Da Huang, Tzu-Neng Chuang, Dray-Ming Shien, Jorng-Tzong Horng RNAMST: efficient and flexible approach for identifying RNA structural homologs. Search on Bibsonomy Nucleic Acids Res. The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
26Tobias Dezulian, Michael Remmert, Javier F. Palatnik, Detlef Weigel, Daniel H. Huson Identification of plant microRNA homologs. Search on Bibsonomy Bioinform. The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
26Jakob Fredslund, Leif Schauser, Lene H. Madsen, Niels Sandal, Jens Stougaard PriFi: using a multiple alignment of related sequences to find primers for amplification of homologs. Search on Bibsonomy Nucleic Acids Res. The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
26Ruslan Sadreyev, Nick V. Grishin Quality of alignment comparison by COMPASS improves with inclusion of diverse confident homologs. Search on Bibsonomy Bioinform. The full citation details ... 2004 DBLP  DOI  BibTeX  RDF
26Robert J. Klein, Sean R. Eddy RSEARCH: Finding homologs of single structured RNA sequences. Search on Bibsonomy BMC Bioinform. The full citation details ... 2003 DBLP  DOI  BibTeX  RDF
26Alexei E. Kazakov, Olga Vassieva, Mikhail S. Gelfand, Andrei Osterman, Ross A. Overbeek Bioinformatics classification and functional analysis of PhoH homologs. Search on Bibsonomy Silico Biol. The full citation details ... 2003 DBLP  BibTeX  RDF
26Maricel Kann, Richard A. Goldstein OPTIMA: A New Score Function for the Detection of Remote Homologs. Search on Bibsonomy Mathematical Methods for Protein Structure Analysis and Design The full citation details ... 2003 DBLP  DOI  BibTeX  RDF
26Janusz M. Bujnicki, Leszek Rychlewski RNA: (guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited - bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure. Search on Bibsonomy BMC Bioinform. The full citation details ... 2002 DBLP  DOI  BibTeX  RDF
26Wei Zhu 0001, Volker Brendel Gene structure identification with MyGV using cDNA evidence and protein homologs to improve ab initio predictions. Search on Bibsonomy Bioinform. The full citation details ... 2002 DBLP  DOI  BibTeX  RDF
26Anders Wallqvist, Yoshifumi Fukunishi, Lynne Reed Murphy, Addi Fadel, Ronald M. Levy Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases. Search on Bibsonomy Bioinform. The full citation details ... 2000 DBLP  DOI  BibTeX  RDF
26Miguel A. Andrade Position-Specific Annotation of Protein Function Based on Multiple Homologs. Search on Bibsonomy ISMB The full citation details ... 1999 DBLP  BibTeX  RDF
26Azat Ya. Badretdinov, Alexei V. Finkelstein How Homologs Can Help to Predict Protein Folds Even Though They Cannot Be Predicted for Individual Sequences. Search on Bibsonomy J. Comput. Biol. The full citation details ... 1998 DBLP  DOI  BibTeX  RDF
26Peter J. van der Spek, André Eker, Suzanne Rademakers, Cécile Visser, Kaoru Sugasawa, Chikahide Masutani, Fumio Hanaoka, Dirk Bootsma, Jan H. J. Hoeijmakers XPC and human homologs of RAD23: intracellular localization and relationship to other nucleotide excision repair complexes. Search on Bibsonomy Nucleic Acids Res. The full citation details ... 1996 DBLP  DOI  BibTeX  RDF
18Server Kasap, Khaled Benkrid, Ying Liu 0003 A high performance fpga-based implementation of position specific iterated blast. Search on Bibsonomy FPGA The full citation details ... 2009 DBLP  DOI  BibTeX  RDF psi-blast, fpga, blast, handel c
18Olivier Perriquet, Pedro Barahona Constraint-Based Strategy for Pairwise RNA Secondary Structure Prediction. Search on Bibsonomy EPIA The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
18Nazar Zaki Protein-Protein Interaction Prediction Using Homology and Inter-domain Linker Region Information. Search on Bibsonomy World Congress on Engineering (Selected Papers) The full citation details ... 2008 DBLP  DOI  BibTeX  RDF Inter-domain Linker Region, yeast protein, Prediction, Protein-Protein Interaction, Homology
18Yue Lu, Sing-Hoi Sze Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences. Search on Bibsonomy RECOMB The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
18Viktor Martyanov, Larkin Elderon, Amy Gladfelter, Dhanalakshmi R. Nair, Robert H. Gross Identifying Fungal Regulatory Motif Patterns Using SCOPE, an Ensemble Learning Method Motif Finder. Search on Bibsonomy BIBE The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
18David A. Lightfoot, Mengxia Michelle Zhu Using The Soybean Genome Database (SoyGD) To Display and Analyze a 1 Gbp Genome Sequence. Search on Bibsonomy BIBE The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
18Deepak Perumal, Chu Sing Lim, Meena K. Sakharkar In silico Identification of Putative Drug Targets in Pseudomonas aeruginosa Through Metabolic Pathway Analysis. Search on Bibsonomy PRIB The full citation details ... 2007 DBLP  DOI  BibTeX  RDF Pseudomonas aeruginosa, Homo sapiens, Comparative microbial genomics, KEGG, kdsA, kdsB, waaG, lpxC, Potential drug targets, MODELLER, Homology
18Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. Search on Bibsonomy IEEE ACM Trans. Comput. Biol. Bioinform. The full citation details ... 2006 DBLP  DOI  BibTeX  RDF Structure-sequence alignment, RNA structure homology search, dynamic programming, tree decomposition, parameterized algorithm, protein threading
18Nan Song, R. D. Sedgewick, Dannie Durand Domain Architecture in Homolog Identification. Search on Bibsonomy Comparative Genomics The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
18Fa Zhang 0001, Lin Xu, Bo Yuan A method to improve structural modeling based on conserved domain clusters. Search on Bibsonomy IPDPS The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
18Xiaoxu Han Inferring Species Phylogenies: A Microarray Approach. Search on Bibsonomy ICIC (3) The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
18Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. Search on Bibsonomy WABI The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
18Walter L. Ruzzo Searching for Non-coding RNA. Search on Bibsonomy BSB The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
18Zasha Weinberg, Walter L. Ruzzo Faster genome annotation of non-coding RNA families without loss of accuracy. Search on Bibsonomy RECOMB The full citation details ... 2004 DBLP  DOI  BibTeX  RDF covariance models, gene families, genome annotation, histone downstream element, hyperthermophile archaea snoRNA, iron response element, rigorous filter, profile hidden Markov models, non-coding RNA
18Yonghua Han, Bin Ma 0002, Kaizhong Zhang SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error. Search on Bibsonomy CSB The full citation details ... 2004 DBLP  DOI  BibTeX  RDF de novo sequencing, sequence tags, database search, protein identification
18Kyungsook Han, Byungkyu Park A Database Server for Predicting Protein-Protein Interactions. Search on Bibsonomy International Conference on Computational Science The full citation details ... 2004 DBLP  DOI  BibTeX  RDF
18Gaurav Narale, Jacques Beaumont, Philip A. Rice, Mark E. Schmitt Computational Identification of RNA Motifs in Genome Sequences. Search on Bibsonomy IEA/AIE The full citation details ... 2004 DBLP  DOI  BibTeX  RDF
18Ying Xu 0001, Dong Xu 0002, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu Protein structure determination using protein threading and sparse NMR data (extended abstract). Search on Bibsonomy RECOMB The full citation details ... 2000 DBLP  DOI  BibTeX  RDF fold recognition, protein structure determination, energy minimization, protein threading, NMR
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