Search results for "InterPro"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
60	Jaehee Jung, Michael R. Thon	Automatic Annotation of Protein Functional Class from Sparse and Imbalanced Data Sets.	VDMB	2006	DBLP DOI BibTeX RDF	Gene Annotation, InterPro, Feature Selection, Gene Ontology, Imbalanced Data
57	Philip Jones, David Binns, Conor McMenamin, Craig McAnulla, Sarah Hunter	The InterPro BioMart: federated query and web service access to the InterPro Resource.	Database J. Biol. Databases Curation	2011	DBLP DOI BibTeX RDF
47	Byung-Hoon Park, George Ostrouchov, Gong-Xin Yu, Al Geist, Andrey Gorin, Nagiza F. Samatova	Inference of Protein-Protein Interactions by Unlikely Profile Pair.	ICDM	2003	DBLP DOI BibTeX RDF
47	Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose	Protein-Based Analysis of Alternative Splicing in the Human Genome.	CSB	2002	DBLP DOI BibTeX RDF
29	Typhaine Paysan-Lafosse, Matthias Blum, Sara Chuguransky, Tiago Grego, Beatriz Lázaro Pinto, Gustavo A. Salazar, Maxwell L. Bileschi, Peer Bork, Alan J. Bridge, Lucy J. Colwell, Julian Gough, Daniel H. Haft, Ivica Letunic, Aron Marchler-Bauer, Huaiyu Mi, Darren A. Natale, Christine A. Orengo, Arun Prasad Pandurangan, Catherine Rivoire, Christian J. A. Sigrist, Ian Sillitoe, Narmada Thanki, Paul D. Thomas, Silvio C. E. Tosatto, Cathy H. Wu, Alex Bateman	InterPro in 2022.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
29	Matthias Blum, Hsin-Yu Chang, Sara Chuguransky, Tiago Grego, Swaathi Kandasamy, Alex L. Mitchell, Gift Nuka, Typhaine Paysan-Lafosse, Matloob Qureshi, Shriya Raj, Lorna J. Richardson, Gustavo A. Salazar, Lowri Williams, Peer Bork, Alan J. Bridge, Julian Gough, Daniel H. Haft, Ivica Letunic, Aron Marchler-Bauer, Huaiyu Mi, Darren A. Natale, Marco Necci, Christine A. Orengo, Arun Prasad Pandurangan, Catherine Rivoire, Christian J. A. Sigrist, Ian Sillitoe, Narmada Thanki, Paul D. Thomas, Silvio C. E. Tosatto, Cathy H. Wu, Alex Bateman, Robert D. Finn	The InterPro protein families and domains database: 20 years on.	Nucleic Acids Res.	2021	DBLP DOI BibTeX RDF
29	Alex L. Mitchell, Teresa K. Attwood, Patricia C. Babbitt, Matthias Blum, Peer Bork, Alan J. Bridge, Shoshana D. Brown, Hsin-Yu Chang, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft, Hongzhan Huang, Ivica Letunic, Rodrigo Lopez, Aurelien Luciani, Fábio Madeira, Aron Marchler-Bauer, Huaiyu Mi, Darren A. Natale, Marco Necci, Gift Nuka, Christine A. Orengo, Arun Prasad Pandurangan, Typhaine Paysan-Lafosse, Sebastien Pesseat, Simon C. Potter, Matloob Qureshi, Neil D. Rawlings, Nicole Redaschi, Lorna J. Richardson, Catherine Rivoire, Gustavo A. Salazar, Amaia Sangrador-Vegas, Christian J. A. Sigrist, Ian Sillitoe, Granger G. Sutton, Narmada Thanki, Paul D. Thomas, Silvio C. E. Tosatto, Siew-Yit Yong, Robert D. Finn	InterPro in 2019: improving coverage, classification and access to protein sequence annotations.	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF
29	Lorna J. Richardson, Neil D. Rawlings, Gustavo A. Salazar, Alexandre Almeida, David Haft, Gregory Ducq, Granger G. Sutton, Robert D. Finn	Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes.	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF
29	Irina M. Armean, Kathryn S. Lilley, Matthew W. B. Trotter, Nicholas Charles Victor Pilkington, Sean B. Holden	Co-complex protein membership evaluation using Maximum Entropy on GO ontology and InterPro annotation.	Bioinform.	2018	DBLP DOI BibTeX RDF
29	Robert D. Finn, Teresa K. Attwood, Patricia C. Babbitt, Alex Bateman, Peer Bork, Alan J. Bridge, Hsin-Yu Chang, Zsuzsanna Dosztányi, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft, Gemma L. Holliday, Hongzhan Huang, Xiaosong Huang, Ivica Letunic, Rodrigo Lopez, Shennan Lu, Aron Marchler-Bauer, Huaiyu Mi, Jaina Mistry, Darren A. Natale, Marco Necci, Gift Nuka, Christine A. Orengo, Young Mi Park, Sebastien Pesseat, Damiano Piovesan, Simon C. Potter, Neil D. Rawlings, Nicole Redaschi, Lorna J. Richardson, Catherine Rivoire, Amaia Sangrador-Vegas, Christian J. A. Sigrist, Ian Sillitoe, Ben Smithers, Silvano Squizzato, Granger G. Sutton, Narmada Thanki, Paul D. Thomas, Silvio C. E. Tosatto, Cathy H. Wu, Ioannis Xenarios, Lai-Su L. Yeh, Siew-Yit Yong, Alex L. Mitchell	InterPro in 2017 - beyond protein family and domain annotations.	Nucleic Acids Res.	2017	DBLP DOI BibTeX RDF
29	Amaia Sangrador-Vegas, Alex L. Mitchell, Hsin-Yu Chang, Siew-Yit Yong, Robert D. Finn	GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations.	Database J. Biol. Databases Curation	2016	DBLP DOI BibTeX RDF
29	Alex L. Mitchell, Hsin-Yu Chang, Louise C. Daugherty, Matthew Fraser, Sarah Hunter, Rodrigo Lopez, Craig McAnulla, Conor McMenamin, Gift Nuka, Sebastien Pesseat, Amaia Sangrador-Vegas, Maxim Scheremetjew, Claudia Rato, Siew-Yit Yong, Alex Bateman, Marco Punta, Teresa K. Attwood, Christian J. A. Sigrist, Nicole Redaschi, Catherine Rivoire, Ioannis Xenarios, Daniel Kahn, Dominique Guyot, Peer Bork, Ivica Letunic, Julian Gough, Matt E. Oates, Daniel H. Haft, Hongzhan Huang, Darren A. Natale, Cathy H. Wu, Christine A. Orengo, Ian Sillitoe, Huaiyu Mi, Paul D. Thomas, Robert D. Finn	The InterPro protein families database: the classification resource after 15 years.	Nucleic Acids Res.	2015	DBLP DOI BibTeX RDF
29	Ahmet Süreyya Rifaioglu, Tunca Dogan, Tolga Can	Unsupervised identification of redundant domain entries in InterPro database using clustering techniques.	BCB	2015	DBLP DOI BibTeX RDF
29	Luna De Ferrari, Stuart Aitken, Jano I. van Hemert, Igor Goryanin	EnzML: multi-label prediction of enzyme classes using InterPro signatures.	BMC Bioinform.	2012	DBLP DOI BibTeX RDF
29	Sarah W. Burge, Elizabeth Kelly, David Lonsdale, Prudence Mutowo-Meullenet, Craig McAnulla, Alex L. Mitchell, Amaia Sangrador-Vegas, Siew-Yit Yong, Nicola J. Mulder, Sarah Hunter	Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation.	Database J. Biol. Databases Curation	2012	DBLP DOI BibTeX RDF
29	Sarah Hunter, Philip Jones, Alex L. Mitchell, Rolf Apweiler, Teresa K. Attwood, Alex Bateman, Thomas Bernard, David Binns, Peer Bork, Sarah W. Burge, Edouard De Castro, Penny C. Coggill, Matthew Corbett, Ujjwal Das, Louise C. Daugherty, Lauranne Duquenne, Robert D. Finn, Matthew Fraser, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Conor McMenamin, Huaiyu Mi, Prudence Mutowo-Meullenet, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Sebastien Pesseat, Marco Punta, Antony F. Quinn, Catherine Rivoire, Amaia Sangrador-Vegas, Jeremy D. Selengut, Christian J. A. Sigrist, Maxim Scheremetjew, John G. Tate, Manjulapramila Thimmajanarthanan, Paul D. Thomas, Cathy H. Wu, Corin Yeats, Siew-Yit Yong	InterPro in 2011: new developments in the family and domain prediction database.	Nucleic Acids Res.	2012	DBLP DOI BibTeX RDF
29	Sarah Hunter, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise C. Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. A. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats	InterPro: the integrative protein signature database.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
29	Florian Hahne, Alexander Mehrle, Dorit Arlt, Annemarie Poustka, Stefan Wiemann, Tim Beißbarth	Extending pathways based on gene lists using InterPro domain signatures.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
29	Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise C. Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats	New developments in the InterPro database.	Nucleic Acids Res.	2007	DBLP DOI BibTeX RDF
29	Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex L. Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan 0001, Cathy H. Wu	InterPro, progress and status in 2005.	Nucleic Acids Res.	2005	DBLP DOI BibTeX RDF
29	Edward de Oliveira Ribeiro, Gustavo G. Zerlotini, Irving Lopes, Victor Ribeiro, Alba Cristina Magalhaes Alves de Melo, Maria Emília Telles Walter, Marcos Motta	Rede BIOFOCO: A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation.	WOB	2004	DBLP BibTeX RDF
29	Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan 0001, Evgeni M. Zdobnov	The InterPro Database, 2003 brings increased coverage and new features.	Nucleic Acids Res.	2003	DBLP DOI BibTeX RDF
29	Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose	Exploring Alternative Transcript Structure in the Humangenome Using Blocks and Interpro.	J. Bioinform. Comput. Biol.	2003	DBLP DOI BibTeX RDF
29	Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist	InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites	Briefings Bioinform.	2002	DBLP DOI BibTeX RDF
29	Margaret Biswas, Joseph F. O'Rourke, Evelyn Camon, Gillian Fraser, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler	Applications of InterPro in Protein Annotation and Genome Analysis.	Briefings Bioinform.	2002	DBLP DOI BibTeX RDF
29	Alex Bateman, Daniel H. Haft	HMM-based databases in InterPro.	Briefings Bioinform.	2002	DBLP DOI BibTeX RDF
29	Alexander Kanapin, Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Florence Servant, Evgeni M. Zdobnov	Interactive InterPro-based comparisons of proteins in whole genomes.	Bioinform.	2002	DBLP DOI BibTeX RDF
29	Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Evgeni M. Zdobnov	Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.	Nucleic Acids Res.	2001	DBLP DOI BibTeX RDF
29	Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov	The InterPro database, an integrated documentation resource for protein families, domains and functional sites.	Nucleic Acids Res.	2001	DBLP DOI BibTeX RDF
29	Evgeni M. Zdobnov, Rolf Apweiler	InterProScan - an integration platform for the signature-recognition methods in InterPro.	Bioinform.	2001	DBLP DOI BibTeX RDF
29	Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov	InterPro-an integrated documentation resource for protein families, domains and functional sites.	Bioinform.	2000	DBLP DOI BibTeX RDF
29	Margaret Biswas, Rolf Apweiler, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Evgeni M. Zdobnov	Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes.	German Conference on Bioinformatics	2000	DBLP BibTeX RDF
23	Marco Masseroli	Management and Analysis of Genomic Functional and Phenotypic Controlled Annotations to Support Biomedical Investigation and Practice.	IEEE Trans. Inf. Technol. Biomed.	2007	DBLP DOI BibTeX RDF
23	Fa Zhang 0001, Zhaoyun Ma, Zhiyong Liu 0002, Bo Yuan	Using Domain-Based Structural Ensemble to Improve Structure Modeling.	BIBE	2007	DBLP DOI BibTeX RDF
23	Yu Xue 0001, Changjiang Jin, Xuebiao Yao	HSPPIP: An Online Tool for Prediction of Protein-Protein Interactions in Humans.	ICIC (3)	2006	DBLP DOI BibTeX RDF
23	Tuan Nam Tran, Kenji Satou, Tu Bao Ho	Using Inductive Logic Programming for Predicting Protein-Protein Interactions from Multiple Genomic Data.	PKDD	2005	DBLP DOI BibTeX RDF
23	Lev Soinov, Alexander Kanapin, Misha Kapushesky	Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation.	WABI	2004	DBLP DOI BibTeX RDF