Search results for "Metagenomic"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
134	Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, Elena Marchiori	Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data.	PRIB	2009	DBLP DOI BibTeX RDF
111	Hongwei Wu	PCA-based linear combinations of oligonucleotide frequencies for metagenomic DNA fragment binning.	CIBCB	2008	DBLP DOI BibTeX RDF
111	Nigel McCoy, Shaun Mahony, Aaron Golden	Gene Prediction in Metagenomic Libraries Using the Self Organising Map and High Performance Computing Techniques.	GCCB	2006	DBLP DOI BibTeX RDF	MPI, HPC, Self Organising Map, Metagenomics
64	Changjun Wu, Ananth Kalyanaraman	An efficient parallel approach for identifying protein families in large-scale metagenomic data sets.	SC	2008	DBLP DOI BibTeX RDF
50	Non Yok, Gail Rosen	Comparison of Gene Prediction Programs for Metagenomic Data.	BIBE	2010	DBLP DOI BibTeX RDF	Orphelia, MGA, GeneMark, specificity, error, sensitivity, fragments, Metagenomic
47	Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, Jonathan A. Eisen	CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads.	RECOMB	2008	DBLP DOI BibTeX RDF	weighted PCA, DNA composition metrics, Genome Signatures, Feature Extraction, Metagenomics, Normalized Cut, Binning
34	Fangyu Yu, Ziming Yan, Fu Liu	Viabin: A novel method for Overlapped Binning of Metagenomic Contigs using ZINB-autodecoder and Assembly Graphs: Viabin: a metagenomic contigs binning tool.	BIC	2023	DBLP DOI BibTeX RDF
34	Carlo Ferravante, Domenico Memoli, Domenico A. Palumbo, Paolo Ciaramella, Antonio Di Loria, Ylenia D'Agostino, Giovanni Nassa, Francesca Rizzo 0002, Roberta Tarallo, Alessandro Weisz, Giorgio Giurato	HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
34	Ziye Wang, Ying Wang, Jed A. Fuhrman, Fengzhu Sun, Shanfeng Zhu	Corrigendum to: Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
34	Ziye Wang, Ying Wang, Jed A. Fuhrman, Fengzhu Sun, Shanfeng Zhu	Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.	Briefings Bioinform.	2020	DBLP DOI BibTeX RDF
33	Stuart King, Yanni Sun, James R. Cole, Sakti Pramanik	BLAST Tree: Fast Filtering for Genomic Sequence Classification.	BIBE	2010	DBLP DOI BibTeX RDF	component, Bioinformatics, Blast, Homology, Metagenomic, Trie, Hmmer
23	Mark Menor, Kyungim Baek, Mahdi Belcaid, Yannick Gingras, Guylaine Poisson	Virus DNA-fragment classification using taxonomic hidden Markov model profiles.	SAC	2010	DBLP DOI BibTeX RDF	machine learning, annotation, viruses, metagenomics
23	Bin Yang, Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Jing-Chi Chen, Francis Y. L. Chin	Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers.	DTMBIO	2009	DBLP DOI BibTeX RDF	dna composition features, k-mer, modified chebychev distance, k-mean clustering, metagenomics, binning
23	Saket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford	Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information.	RECOMB	2009	DBLP DOI BibTeX RDF	Hierarchical Tree Decompositions, Variation of Information, OTUs, Clustering, Protein Interaction Networks, Metagenomics
17	Josip Maric, Kresimir Krizanovic, Sylvain Riondet, Niranjan Nagarajan, Mile Sikic	Comparative analysis of metagenomic classifiers for long-read sequencing datasets.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
17	Andrew Zheng, Jim Shaw, Yun William Yu	Mora: abundance aware metagenomic read re-assignment for disentangling similar strains.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
17	Anmol M. Kiran, Mariem Hanachi, Nihad Alsayed, Meriem Fassatoui, Ovokeraye Achinike-Oduaran, Imane Allali, Suresh Maslamoney, Ayton Meintjes, Lyndon Zass, Jorge Da Rocha, Rym Kefi, Alia Benkahla, Kais Ghedira, Sumir Panji, Nicola J. Mulder, Faisal M. Fadlelmola, Oussema Souiai	The African Human Microbiome Portal: a public web portal of curated metagenomic metadata.	Database J. Biol. Databases Curation	2024	DBLP DOI BibTeX RDF
17	Kristofer Sandås, Jacob Lewerentz, Edvin Karlsson, Linda Karlsson, David Sundell, Kotryna Simonyté-Sjödin, Andreas Sjödin	Nanometa Live: a user-friendly application for real-time metagenomic data analysis and pathogen identification.	Bioinform.	2024	DBLP DOI BibTeX RDF
17	David Koslicki, Stephen White, Chunyu Ma, Alexei Novikov	YACHT: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample.	Bioinform.	2024	DBLP DOI BibTeX RDF
17	Hannah-Marie Martiny, Nikiforos Pyrounakis, Thomas Nordahl Petersen, Oksana Lukjancenko, Frank Aarestrup, Philip T. L. C. Clausen, Patrick Munk	ARGprofiler - a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets.	Bioinform.	2024	DBLP DOI BibTeX RDF
17	Diogo Pratas, Armando J. Pinho	An experimental sorting method for improving metagenomic data encoding.	CoRR	2024	DBLP DOI BibTeX RDF
17	Ali Azizpour, Advait Balaji, Todd J. Treangen, Santiago Segarra	GraSSRep: Graph-Based Self-Supervised Learning for Repeat Detection in Metagenomic Assembly.	CoRR	2024	DBLP DOI BibTeX RDF
17	Somayeh Mohammadi, Latif Pourkarimi, Manuel Zschäbitz, Tristan Aretz, Ninon De Mecquenem, Ulf Leser, Knut Reinert	Optimizing Job/Task Granularity for Metagenomic Workflows in Heterogeneous Cluster Infrastructures.	EDBT/ICDT Workshops	2024	DBLP BibTeX RDF
17	Xi Chen	Computational Analyses of Metagenomic Data		2024	RDF
17	Ramakrishnan Raman 0001, Amit Barve, R. Meenakshi, G. M. Jayaseelan, P. Ganeshan, Syed Noeman Taqui, Hesham S. Almoallim, Sulaiman Ali Alharbi, S. S. Raghavan	Classifying the bacterial taxonomy with its metagenomic data using the deep neural network model.	J. Intell. Fuzzy Syst.	2023	DBLP DOI BibTeX RDF
17	Oliver S. Bak, Marcus D. Jensen, Frederik M. Trudslev, Andreas Windfeld, Andre Lamurias	BinChill: A Metagenomic Binning Ensemble Method.	IEEE Access	2023	DBLP DOI BibTeX RDF
17	Vicky Zheng, Ahmet Erdem Sariyüce, Jaroslaw Zola	Identifying Taxonomic Units in Metagenomic DNA Streams on Mobile Devices.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
17	Lijia Ma, Wenwei Deng, Yuan Bai, Zhanwei Du, Minfeng Xiao, Lin Wang 0012, Jianqiang Li 0001, Asoke K. Nandi	Identifying Phage Sequences From Metagenomic Data Using Deep Neural Network With Word Embedding and Attention Mechanism.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
17	K. Syama, J. Angel Arul Jothi, Namita Khanna	Correction: Automatic disease prediction from human gut metagenomic data using boosting GraphSAGE.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
17	Xu Zhu, Lili Zhao, Lihong Huang, Wenxian Yang, Liansheng Wang, Rongshan Yu	cgMSI: pathogen detection within species from nanopore metagenomic sequencing data.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
17	K. Syama, J. Angel Arul Jothi, Namita Khanna	Automatic disease prediction from human gut metagenomic data using boosting GraphSAGE.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
17	Fotis A. Baltoumas, Evangelos Karatzas, David Páez-Espino, Nefeli K. Venetsianou, Eleni Aplakidou, Anastasis Oulas, Robert D. Finn, Sergey Ovchinnikov, Evangelos Pafilis, Nikos Kyrpides, Georgios A. Pavlopoulos	Exploring microbial functional biodiversity at the protein family level - From metagenomic sequence reads to annotated protein clusters.	Frontiers Bioinform.	2023	DBLP DOI BibTeX RDF
17	Camilo Valdes, Vitalii Stebliankin, Daniel Ruiz-Perez, Ji In Park, Hajeong Lee, Giri Narasimhan	Microbiome maps: Hilbert curve visualizations of metagenomic profiles.	Frontiers Bioinform.	2023	DBLP DOI BibTeX RDF
17	Sosie Yorki, Terrance Shea, Christina Cuomo, Bruce J. Walker, Regina C. Larocque, Abigail L. Manson, Ashlee M. Earl, Colin J. Worby	Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
17	Jiayin Zhou, Wen Song, Qichao Tu	To assemble or not to assemble: metagenomic profiling of microbially mediated biogeochemical pathways in complex communities.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
17	Xuebin Wang, Taifu Wang, Zhihao Xie, Youjin Zhang, Shiqiang Xia, Ruixue Sun, Xinqiu He, Ruizhi Xiang, Qiwen Zheng, Zhencheng Liu, Jin'an Wang, Honglong Wu, Xiangqian Jin, Weijun Chen, Dongfang Li, Zengquan He	GPMeta: a GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
17	Zhenmiao Zhang, Chao Yang, Werner Pieter Veldsman, Xiaodong Fang, Lu Zhang 0061	Benchmarking genome assembly methods on metagenomic sequencing data.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
17	Gustavo Henrique Cervi, Cecilia Dias Flores, Claudia Elizabeth Thompson	The MetaGens algorithm for metagenomic database lossy compression and subject alignment.	Database J. Biol. Databases Curation	2023	DBLP DOI BibTeX RDF
17	Wei Shen, Hongyan Xiang, Tianquan Huang, Hui Tang, Mingli Peng, Dachuan Cai, Peng Hu, Hong Ren	KMCP: accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping.	Bioinform.	2023	DBLP DOI BibTeX RDF
17	Boyan Zhou, Huilin Li	STEMSIM: a simulator of within-strain short-term evolutionary mutations for longitudinal metagenomic data.	Bioinform.	2023	DBLP DOI BibTeX RDF
17	Guowei Chen, Xubo Tang, Mang Shi, Yanni Sun	VirBot: an RNA viral contig detector for metagenomic data.	Bioinform.	2023	DBLP DOI BibTeX RDF
17	Samuel Martin, Martin Ayling, Livia Patrono, Mario Cáccamo, Pablo Murcia, Richard M. Leggett	Capturing variation in metagenomic assembly graphs with MetaCortex.	Bioinform.	2023	DBLP DOI BibTeX RDF
17	Daniel Chang, Vinod K. Gupta, Benjamin Hur, Kevin Cunningham, Jaeyun Sung	GMWI-webtool: a user-friendly browser application for assessing health through metagenomic gut microbiome profiling.	Bioinform.	2023	DBLP DOI BibTeX RDF
17	Chunyu Zhao, Boris Dimitrov, Miriam Goldman, Stephen Nayfach, Katherine S. Pollard	MIDAS2: Metagenomic Intra-species Diversity Analysis System.	Bioinform.	2023	DBLP DOI BibTeX RDF
17	Andrew J. Mikalsen, Jaroslaw Zola	Coriolis: enabling metagenomic classification on lightweight mobile devices.	Bioinform.	2023	DBLP DOI BibTeX RDF
17	Wei Wei, Andrew Millward, David Koslicki	Finding phylogeny-aware and biologically meaningful averages of metagenomic samples: L2UniFrac.	Bioinform.	2023	DBLP DOI BibTeX RDF
17	Anupam Gautam, Wenhuan Zeng, Daniel H. Huson	MeganServer: facilitating interactive access to metagenomic data on a server.	Bioinform.	2023	DBLP DOI BibTeX RDF
17	Arvid E. Gollwitzer, Mohammed Alser, Joel Bergtholdt, Joël Lindegger, Maximilian-David Rumpf, Can Firtina, Serghei Mangul, Onur Mutlu	MetaFast: Enabling Fast Metagenomic Classification via Seed Counting and Edit Distance Approximation.	CoRR	2023	DBLP DOI BibTeX RDF
17	Nika Mansouri-Ghiasi, Mohammad Sadrosadati, Harun Mustafa, Arvid Gollwitzer, Can Firtina, Julien Eudine, Haiyu Mao, Joël Lindegger, Meryem Banu Cavlak, Mohammed Alser, Jisung Park 0001, Onur Mutlu	MetaStore: High-Performance Metagenomic Analysis via In-Storage Computing.	CoRR	2023	DBLP DOI BibTeX RDF
17	Wan Xiang Shen, Shu Ran Liang, Yu Yang Jiang, Yu Zong Chen	Enhanced metagenomic deep learning for disease prediction and consistent signature recognition by restructured microbiome 2D representations.	Patterns	2023	DBLP DOI BibTeX RDF
17	Wan Xiang Shen, Yu Zong Chen	Toward ordered -omics data science: Researchers on the magic of turning metagenomic chaos into image-like patterns.	Patterns	2023	DBLP DOI BibTeX RDF
17	Zhaoqian Liu, Qi Wang, Anjun Ma, Shaohong Feng, Dongjun Chung, Jing Zhao, Qin Ma 0003, Bingqiang Liu	Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
17	Rohit Roy Chowdhury, Jesmita Dhar, Stephy Mol Robinson, Abhishake Lahiri, Kausik Basak, Sandip Paul, Rachana Banerjee	MACI: A machine learning-based approach to identify drug classes of antibiotic resistance genes from metagenomic data.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
17	Hongxuan Zhai, Julia Fukuyama	A convenient correspondence between k-mer-based metagenomic distances and phylogenetically-informed β-diversity measures.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
17	James D. Brunner, Laverne A. Gallegos-Graves, Marie E. Kroeger	Inferring microbial interactions with their environment from genomic and metagenomic data.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
17	Saima Sultana Tithi, Frank O. Aylward, Roderick V. Jensen, Liqing Zhang 0002	FastViromeExplorer-Novel: Recovering Draft Genomes of Novel Viruses and Phages in Metagenomic Data.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
17	Margherita Cavattoni, Matteo Comin	ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
17	Rudolf Mayer, Alicja Karlowicz, Markus Hittmeir	k-Anonymity on Metagenomic Features in Microbiome Databases.	ARES	2023	DBLP DOI BibTeX RDF
17	Nguyen Phi Khanh, Le Van Vinh	An Improved Method for Assembling Metagenomic Sequences.	ICSSE	2023	DBLP DOI BibTeX RDF
17	Josipa Lipovac, Kresimir Krizanovic	Using De Novo Metagenome Assembly for Improved Metagenomic Classification.	MIPRO	2023	DBLP DOI BibTeX RDF
17	Xianhui Shen, Bo Jin, Ying Wang, Yunfei Bai	Speedy-Mcrio: An Easy-to-use, Comprehensive, Reads-based Pipeline for Metagenomic Shotgun Sequencing Data Analysis.	ICBBT	2023	DBLP DOI BibTeX RDF
17	Andre Lamurias, Alessandro Tibo, Katja Hose, Mads Albertsen, Thomas Dyhre Nielsen	Metagenomic Binning using Connectivity-constrained Variational Autoencoders.	ICML	2023	DBLP BibTeX RDF
17	Jacqueline Rehner, Georges Pierre Schmartz, Laura Groeger, Jan Dastbaz, Nicole Ludwig 0001, Matthias Hannig, Stefan Rupf, Berthold Seitz, Elias Flockerzi, Tim Berger, Matthias Christian Reichert, Marcin Krawczyk, Eckart Meese, Christian Herr, Robert Bals, Sören L. Becker, Andreas Keller, Rolf Müller 0002	Systematic Cross-biospecimen Evaluation of DNA Extraction Kits for Long- and Short-read Multi-metagenomic Sequencing Studies.	Genom. Proteom. Bioinform.	2022	DBLP DOI BibTeX RDF
17	Zhenwei Liu, Tao Zhang, Keke Wu, Zhongshan Li, Xiaomin Chen, Shan Jiang, Lifeng Du, Saisai Lu, Chongxiang Lin, Jinyu Wu, Xiaobing Wang	Metagenomic Analysis Reveals A Possible Association Between Respiratory Infection and Periodontitis.	Genom. Proteom. Bioinform.	2022	DBLP DOI BibTeX RDF
17	Huynh Quang Bao, Le Van Vinh, Tran Van Hoai	A Deep Embedded Clustering Algorithm for the Binning of Metagenomic Sequences.	IEEE Access	2022	DBLP DOI BibTeX RDF
17	Davide Storato, Matteo Comin	K2Mem: Discovering Discriminative K-mers From Sequencing Data for Metagenomic Reads Classification.	IEEE ACM Trans. Comput. Biol. Bioinform.	2022	DBLP DOI BibTeX RDF
17	Ken Hung-On Yu, Xiunan Fang, Haobin Yao, Bond Ng, Tak Kwan Leung, Ling-Ling Wang, Chi Ho Lin, Agnes Sze Wah Chan, Wai Keung Leung, Suet Yi Leung, Joshua Wing Kei Ho	Evaluation of Experimental Protocols for Shotgun Whole-Genome Metagenomic Discovery of Antibiotic Resistance Genes.	IEEE ACM Trans. Comput. Biol. Bioinform.	2022	DBLP DOI BibTeX RDF
17	Ankit Gupta, Aditya S. Malwe, Gopal N. Srivastava, Parikshit Thoudam, Keshav Hibare, Vineet K. Sharma	MP4: a machine learning based classification tool for prediction and functional annotation of pathogenic proteins from metagenomic and genomic datasets.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
17	Daniel M. Portik, C. Titus Brown, N. Tessa Pierce-Ward	Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
17	Zhongjun Jiang, Xiaobo Li, Lijun Guo	MetaCRS: unsupervised clustering of contigs with the recursive strategy of reducing metagenomic dataset's complexity.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
17	Byron J. Smith, Xiangpeng Li, Zhou Jason Shi, Adam R. Abate, Katherine S. Pollard	Scalable Microbial Strain Inference in Metagenomic Data Using StrainFacts.	Frontiers Bioinform.	2022	DBLP DOI BibTeX RDF
17	Lucas Czech, Alexandros Stamatakis, Micah Dunthorn, Pierre Barbera	Metagenomic Analysis Using Phylogenetic Placement - A Review of the First Decade.	Frontiers Bioinform.	2022	DBLP DOI BibTeX RDF
17	Robert A. Player, Angeline Aguinaldo, Brian B. Merritt, Lisa N. Maszkiewicz, Oluwaferanmi E. Adeyemo, Ellen R. Forsyth, Kathleen J. Verratti, Brant W. Chee, Sarah L. Grady, Christopher E. Bradburne	The META tool optimizes metagenomic analyses across sequencing platforms and classifiers.	Frontiers Bioinform.	2022	DBLP DOI BibTeX RDF
17	Carmen Saenz, Eleonora Nigro, Vithiagaran Gunalan, Manimozhiyan Arumugam	MIntO: A Modular and Scalable Pipeline For Microbiome Metagenomic and Metatranscriptomic Data Integration.	Frontiers Bioinform.	2022	DBLP DOI BibTeX RDF
17	Xubo Tang, Jiayu Shang, Yanni Sun	RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
17	Zhi Ruan, Shengmei Zou, Zeyu Wang, Luhan Zhang, Hangfei Chen, Yuye Wu, Huiqiong Jia, Mohamed S. Draz, Ye Feng	Toward accurate diagnosis and surveillance of bacterial infections using enhanced strain-level metagenomic next-generation sequencing of infected body fluids.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
17	Oskar Hickl, Pedro Queirós, Paul Wilmes, Patrick May, Anna Heintz-Buschart	binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
17	Jiayu Shang, Xubo Tang, Ruocheng Guo, Yanni Sun	Accurate identification of bacteriophages from metagenomic data using Transformer.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
17	Georges Pierre Schmartz, Pascal Hirsch, Jérémy Amand, Jan Dastbaz, Tobias Fehlmann, Fabian Kern, Rolf Müller 0002, Andreas Keller	BusyBee Web: towards comprehensive and differential composition-based metagenomic binning.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
17	Christopher Pockrandt, Aleksey V. Zimin, Steven L. Salzberg	Metagenomic classification with KrakenUniq on low-memory computers.	J. Open Source Softw.	2022	DBLP DOI BibTeX RDF
17	Jun Chen, Xianyang Zhang	dICC: distance-based intraclass correlation coefficient for metagenomic reproducibility studies.	Bioinform.	2022	DBLP DOI BibTeX RDF
17	Andre Lamurias, Mantas Sereika, Mads Albertsen, Katja Hose, Thomas Dyhre Nielsen	Metagenomic binning with assembly graph embeddings.	Bioinform.	2022	DBLP DOI BibTeX RDF
17	Yuxuan Du, Fengzhu Sun	HiFine: integrating Hi-C-based and shotgun-based methods to refine binning of metagenomic contigs.	Bioinform.	2022	DBLP DOI BibTeX RDF
17	Andrzej Zielezinski, Sebastian Deorowicz, Adam Gudys	PHIST: fast and accurate prediction of prokaryotic hosts from metagenomic viral sequences.	Bioinform.	2022	DBLP DOI BibTeX RDF
17	Sunera Chandrasiri, Thumula Perera, Anjala Dilhara, Indika Perera, Vijini Mallawaarachchi	CH-Bin: A convex hull based approach for binning metagenomic contigs.	Comput. Biol. Chem.	2022	DBLP DOI BibTeX RDF
17	Vijini Mallawaarachchi, Yu Lin 0001	Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs.	J. Comput. Biol.	2022	DBLP DOI BibTeX RDF
17	Yuxuan Du, Sarah M. Laperriere, Jed A. Fuhrman, Fengzhu Sun	Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial Regression.	J. Comput. Biol.	2022	DBLP DOI BibTeX RDF
17	Jorge Miguel Silva, João Rafael Almeida, José Luís Oliveira	Classifying and discovering genomic sequences in metagenomic repositories.	CENTERIS/ProjMAN/HCist	2022	DBLP DOI BibTeX RDF
17	Pengfei Zhang, Zhengyuan Jiang, Yixuan Wang, Yu Li 0006	CLMB: Deep Contrastive Learning for Robust Metagenomic Binning.	RECOMB	2022	DBLP DOI BibTeX RDF
17	Vijini Mallawaarachchi, Yu Lin 0001	MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs.	RECOMB	2022	DBLP DOI BibTeX RDF
17	Lei Xiao, Li Deng, Xiao Liu	Metagenomic Sequence Classification based on One-Dimensional Convolutional Neural Network.	ICCPR	2022	DBLP DOI BibTeX RDF
17	Hansheng Xue, Vijini Mallawaarachchi, Yujia Zhang, Vaibhav Rajan, Yu Lin 0001	RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning.	AAAI	2022	DBLP DOI BibTeX RDF
17	Jolanta Kawulok, Michal Kawulok	A genetic algorithm for classifying metagenomic data.	GECCO Companion	2022	DBLP DOI BibTeX RDF
17	Piotr Grzesik, Dariusz Mrozek	Accelerating Edge Metagenomic Analysis with Serverless-Based Cloud Offloading.	ICCS (1)	2022	DBLP DOI BibTeX RDF
17	Yu Zhang, Chenchen Li, Haodi Feng, Daming Zhu	DLmeta: a deep learning method for metagenomic identification.	BIBM	2022	DBLP DOI BibTeX RDF
17	Brook Stacy, Jason Hauzel, Mikael Lindvall, Adam A. Porter, Mihai Pop	Metamorphic Testing in Bioinformatics Software: A Case Study on Metagenomic Assembly.	MET@ICSE	2022	DBLP DOI BibTeX RDF
17	Emrecan Ozdogan, Adriana Fasino, Rachel Nguyen, Bahrad A. Sokhansanj, Gail Rosen, Robi Polikar	Semi-supervised and Incremental VSEARCH for Metagenomic Classification.	SSCI	2022	DBLP DOI BibTeX RDF
17	Yuqing Yang, Xin Wang, Kaikun Xie, Congmin Zhu, Ning Chen 0002, Ting Chen 0006	kLDM: Inferring Multiple Metagenomic Association Networks Based on the Variation of Environmental Factors.	Genom. Proteom. Bioinform.	2021	DBLP DOI BibTeX RDF
17	Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin 0001	Improving metagenomic binning results with overlapped bins using assembly graphs.	Algorithms Mol. Biol.	2021	DBLP DOI BibTeX RDF
17	Derek Reiman, Ahmed Metwally 0002, Jun Sun, Yang Dai	Meta-Signer: Metagenomic Signature Identifier based onrank aggregation of features.	F1000Research	2021	DBLP DOI BibTeX RDF