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Found 97 publication records. Showing 97 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 41 | Shibin Qiu, Terran Lane, Cundong Yang |
Efficient search algorithms for RNAi target detection.  |
J. Supercomput.  |
2007 |
DBLP DOI BibTeX RDF |
RNAi target detection, String inexact matching, Reverse string search, Off-target, siRNA seed region, String kernels |
| 38 | Shibin Qiu, Terran Lane |
String Kernels of Imperfect Matches for Off-target Detection in RNA Interference. |
International Conference on Computational Science (2) |
2005 |
DBLP DOI BibTeX RDF |
|
| 21 | Christian Anthon, Giulia Ilaria Corsi, Jan Gorodkin |
CRISPRon/off: CRISPR/Cas9 on- and off-target gRNA design. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 21 | Doha Naga, Wolfgang Muster, Eunice Musvasva, Gerhard F. Ecker |
Off-targetP ML: an open source machine learning framework for off-target panel safety assessment of small molecules. |
J. Cheminformatics |
2022 |
DBLP DOI BibTeX RDF |
|
| 19 | Wei-Xin Hu, Yu Rong, Yan Guo, Feng Jiang, Wen Tian, Hao Chen, Shan-Shan Dong, Tie-Lin Yang |
ExsgRNA: reduce off-target efficiency by on-target mismatched sgRNA. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 19 | Fiaz Ahmad, Baijing Qiu, Xiaoya Dong, Jing Ma, Xin Huang, Shibbir Ahmed, Farman Ali Chandio |
Effect of operational parameters of UAV sprayer on spray deposition pattern in target and off-target zones during outer field weed control application. |
Comput. Electron. Agric. |
2020 |
DBLP DOI BibTeX RDF |
|
| 19 | Piotr J. Kamola, Yuko Nakano, Tomoko Takahashi, Paul A. Wilson 0002, Kumiko Ui-Tei |
The siRNA Non-seed Region and Its Target Sequences Are Auxiliary Determinants of Off-Target Effects. |
PLoS Comput. Biol. |
2015 |
DBLP DOI BibTeX RDF |
|
| 19 | Thomas J. Cradick, Giovanna Ambrosini, Christian Iseli, Philipp Bucher, Anton P. McCaffrey |
ZFN-Site searches genomes for zinc finger nuclease target sites and off-target sites. |
BMC Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
| 13 | Tareian A. Cazares, Richard E. Higgs, Jibo Wang, Hatice Gulcin Ozer |
SeedMatchR: identify off-target effects mediated by siRNA seed regions in RNA-seq experiments. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 13 | Davin Choo, Kirankumar Shiragur, Caroline Uhler |
Causal Discovery under Off-Target Interventions. |
CoRR |
2024 |
DBLP DOI BibTeX RDF |
|
| 13 | Ye Luo, Yaowen Chen, Huanzeng Xie, Wentao Zhu, Guishan Zhang |
Interpretable CRISPR/Cas9 off-target activities with mismatches and indels prediction using BERT. |
Comput. Biol. Medicine |
2024 |
DBLP DOI BibTeX RDF |
|
| 13 | Rico Sennrich, Jannis Vamvas, Alireza Mohammadshahi |
Mitigating Hallucinations and Off-target Machine Translation with Source-Contrastive and Language-Contrastive Decoding. |
EACL (2) |
2024 |
DBLP BibTeX RDF |
|
| 13 | Davin Choo, Kirankumar Shiragur, Caroline Uhler |
Causal Discovery under Off-Target Interventions. |
AISTATS |
2024 |
DBLP BibTeX RDF |
|
| 13 | Yazdan Maghsoud, Vindi M. Jayasinghe-Arachchige, Pratibha Kumari 0003, G. Andrés Cisneros, Jin Liu 0005 |
Leveraging QM/MM and Molecular Dynamics Simulations to Decipher the Reaction Mechanism of the Cas9 HNH Domain to Investigate Off-Target Effects. |
J. Chem. Inf. Model. |
2023 |
DBLP DOI BibTeX RDF |
|
| 13 | Zijun Zhang, Adam R. Lamson, Michael J. Shelley, Olga G. Troyanskaya |
Interpretable neural architecture search and transfer learning for understanding CRISPR-Cas9 off-target enzymatic reactions. |
Nat. Comput. Sci. |
2023 |
DBLP DOI BibTeX RDF |
|
| 13 | Zengrui Guan, Zhenran Jiang |
Transformer-based anti-noise models for CRISPR-Cas9 off-target activities prediction. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 13 | Zeinab Sherkatghanad, Moloud Abdar, Jérémy Charlier, Vladimir Makarenkov |
Using traditional machine learning and deep learning methods for on- and off-target prediction in CRISPR/Cas9: a review. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 13 | Guishan Zhang, Ye Luo, Xianhua Dai, Zhiming Dai |
Benchmarking deep learning methods for predicting CRISPR/Cas9 sgRNA on- and off-target activities. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 13 | Rico Sennrich, Jannis Vamvas, Alireza Mohammadshahi |
Mitigating Hallucinations and Off-target Machine Translation with Source-Contrastive and Language-Contrastive Decoding. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
| 13 | Liang Chen 0024, Shuming Ma, Dongdong Zhang 0001, Furu Wei, Baobao Chang |
On the Off-Target Problem of Zero-Shot Multilingual Neural Machine Translation. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
| 13 | Fengkai Tian, Caio Canella Vieira, Jing Zhou, Jianfeng Zhou, Pengyin Chen |
Estimation of Off-Target Dicamba Damage on Soybean Using UAV Imagery and Deep Learning. |
Sensors |
2023 |
DBLP DOI BibTeX RDF |
|
| 13 | Zheming Jin, Jeffrey S. Vetter |
Experience Migrating OpenCL to SYCL: A Case Study on Searches for Potential Off-Target Sites of Cas9 RNA-Guided Endonucleases on AMD GPUs. |
SOCC |
2023 |
DBLP DOI BibTeX RDF |
|
| 13 | Liang Chen 0024, Shuming Ma, Dongdong Zhang 0001, Furu Wei, Baobao Chang |
On the Off-Target Problem of Zero-Shot Multilingual Neural Machine Translation. |
ACL (Findings) |
2023 |
DBLP DOI BibTeX RDF |
|
| 13 | Caio Canella Vieira, Shagor Sarkar, Fengkai Tian, Jing Zhou, Diego Jarquin, Henry T. Nguyen, Jianfeng Zhou, Pengyin Chen |
Differentiate Soybean Response to Off-Target Dicamba Damage Based on UAV Imagery and Machine Learning. |
Remote. Sens. |
2022 |
DBLP DOI BibTeX RDF |
|
| 13 | Francisco Javier López-González, Alejandro Costoya-Sánchez, José Paredes-Pacheco, Alexis Moscoso, Jesús Silva-Rodríguez, Pablo Aguiar 0001 |
Impact of spill-in counts from off-target regions on [18F]Flortaucipir PET quantification. |
NeuroImage |
2022 |
DBLP DOI BibTeX RDF |
|
| 13 | Ofir Yaish, Maor Asif, Yaron Orenstein |
A systematic evaluation of data processing and problem formulation of CRISPR off-target site prediction. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 13 | Thomas W. Laver, Elisa De Franco, Matthew B. Johnson, Kashyap A. Patel, Sian Ellard, Michael N. Weedon, Sarah E. Flanagan, Matthew Wakeling |
SavvyCNV: Genome-wide CNV calling from off-target reads. |
PLoS Comput. Biol. |
2022 |
DBLP DOI BibTeX RDF |
|
| 13 | Shreya Gupta, Chia-Yi Yeh, Edward W. Knightly |
Stealthy Off-Target Coupled-Control-Plane Jamming. |
CNS |
2022 |
DBLP DOI BibTeX RDF |
|
| 13 | Joseph Bingham, Netanel Arussy, Saman A. Zonouz |
Guide-Guard: Off-Target Predicting in CRISPR Applications. |
IDEAL |
2022 |
DBLP DOI BibTeX RDF |
|
| 13 | Tomasz Kuchta, Bartosz Zator |
Auto Off-Target: Enabling Thorough and Scalable Testing for Complex Software Systems. |
ASE |
2022 |
DBLP DOI BibTeX RDF |
|
| 13 | Eleni Koutsoni, Vasileios Konstantakos, Anastasios Nentidis, Anastasia Krithara, Georgios Paliouras |
Modeling the off-target effects of CRISPR-Cas9 experiments for the treatment of Duchenne Muscular Dystrophy. |
SETN |
2022 |
DBLP DOI BibTeX RDF |
|
| 13 | Jinzhuang Dou, Degang Wu, Lin Ding, Kai Wang, Minghui Jiang 0005, Xiaoran Chai, Dermot F. Reilly, E. Shyong Tai, Jianjun Liu, Xueling Sim, Shanshan Cheng, Chaolong Wang |
Using off-target data from whole-exome sequencing to improve genotyping accuracy, association analysis and polygenic risk prediction. |
Briefings Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 13 | Florian Störtz, Peter Minary |
crisprSQL: a novel database platform for CRISPR/Cas off-target cleavage assays. |
Nucleic Acids Res. |
2021 |
DBLP DOI BibTeX RDF |
|
| 13 | Jérémy Charlier, Robert Nadon, Vladimir Makarenkov |
Accurate deep learning off-target prediction with novel sgRNA-DNA sequence encoding in CRISPR-Cas9 gene editing. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 13 | Prasoon Kumar Vinodkumar, Cagri Ozcinar, Gholamreza Anbarjafari |
Prediction of sgRNA Off-Target Activity in CRISPR/Cas9 Gene Editing Using Graph Convolution Network. |
Entropy |
2021 |
DBLP DOI BibTeX RDF |
|
| 13 | Weiming Xiang 0003, Dong Chen 0013, Yingbo Cui, Shaoliang Peng |
H-VAE: A Hybrid Variational AutoEncoder with Data Augmentation in Predicting CRISPR/Cas9 Off-target. |
BIBM |
2021 |
DBLP DOI BibTeX RDF |
|
| 13 | Yu Zhang 0084, Yahui Long, Rui Yin 0002, Chee Keong Kwoh 0001 |
DL-CRISPR: A Deep Learning Method for Off-Target Activity Prediction in CRISPR/Cas9 With Data Augmentation. |
IEEE Access |
2020 |
DBLP DOI BibTeX RDF |
|
| 13 | Qiaoyue Liu, Xiang Cheng, Gan Liu, Bohao Li, Xiuqin Liu |
Deep learning improves the ability of sgRNA off-target propensity prediction. |
BMC Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 13 | Daria Pawlik, Antoine Leuzy, Olof Strandberg, Ruben Smith |
Compensating for choroid plexus based off-target signal in the hippocampus using 18F-flortaucipir PET. |
NeuroImage |
2020 |
DBLP DOI BibTeX RDF |
|
| 13 | Yuli Gao, Guohui Chuai, Weichuan Yu, Shen Qu, Qi Liu 0019 |
Data imbalance in CRISPR off-target prediction. |
Briefings Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 13 | Samuele Cancellieri, Matthew C. Canver, Nicola Bombieri, Rosalba Giugno, Luca Pinello |
CRISPRitz: rapid, high-throughput and variant-aware in silico off-target site identification for CRISPR genome editing. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 13 | Yuyu Zheng, Xiangyu Meng, Pierre Zweigenbaum, Lingling Chen, Jingbo Xia |
Hybrid phenotype mining method for investigating off-target protein and underlying side effects of anti-tumor immunotherapy. |
BMC Medical Informatics Decis. Mak. |
2020 |
DBLP DOI BibTeX RDF |
|
| 13 | Dong Chen 0013, Wenjie Shu, Shaoliang Peng |
Predicting CRISPR-Cas9 Off-target with Self-supervised Neural Networks. |
BIBM |
2020 |
DBLP DOI BibTeX RDF |
|
| 13 | Julien Rey, Inès Rasolohery, Pierre Tufféry, Frédéric Guyon, Gautier Moroy |
PatchSearch: a web server for off-target protein identification. |
Nucleic Acids Res. |
2019 |
DBLP DOI BibTeX RDF |
|
| 13 | Shixiong Zhang, Xiangtao Li, Qiuzhen Lin, Ka-Chun Wong |
Synergizing CRISPR/Cas9 off-target predictions for ensemble insights and practical applications. |
Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
| 13 | Jerzy Tiuryn, Ewa Szczurek |
Learning signaling networks from combinatorial perturbations by exploiting siRNA off-target effects. |
Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
| 13 | Mohan S. Rao, Rishi Gupta, Michael J. Liguori, Mufeng Hu, Xin Huang, Srinivasa R. Mantena, Scott W. Mittelstadt, Eric A. G. Blomme, Terry R. Van Vleet |
Novel Computational Approach to Predict Off-Target Interactions for Small Molecules. |
Frontiers Big Data |
2019 |
DBLP DOI BibTeX RDF |
|
| 13 | Qiao Liu, Di He 0003, Lei Xie 0006 |
Prediction of off-target specificity and cell-specific fitness of CRISPR-Cas System using attention boosted deep learning and network-based gene feature. |
PLoS Comput. Biol. |
2019 |
DBLP DOI BibTeX RDF |
|
| 13 | Dejian Zhao, Deyou Zheng |
SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis. |
BMC Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 13 | Jongyeun Park, Seung Hyun Ahn, Kwang Moon Cho, Dowoon Gu, Eun-Sook Jang, Sung Wook Chi |
siAbasic: a comprehensive database for potent siRNA-6Ø sequences without off-target effects. |
Database J. Biol. Databases Curation |
2018 |
DBLP DOI BibTeX RDF |
|
| 13 | Jiecong Lin, Ka-Chun Wong |
Off-target predictions in CRISPR-Cas9 gene editing using deep learning. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 13 | Hui Peng, Yi Zheng, Zhixun Zhao, Tao Liu 0031, Jinyan Li 0001 |
Recognition of CRISPR/Cas9 off-target sites through ensemble learning of uneven mismatch distributions. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 13 | Sumana Srivatsa, Jack Kuipers, Fabian Schmich, Simone Eicher, Mario Emmenlauer, Christoph Dehio, Niko Beerenwinkel |
Improved pathway reconstruction from RNA interference screens by exploiting off-target effects. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 13 | Chunkun Bo, Vinh Dang, Elaheh Sadredini, Kevin Skadron |
Searching for Potential gRNA Off-Target Sites for CRISPR/Cas9 Using Automata Processing Across Different Platforms. |
HPCA |
2018 |
DBLP DOI BibTeX RDF |
|
| 13 | Beomjoon Kim, Leslie Pack Kaelbling, Tomás Lozano-Pérez |
Guiding Search in Continuous State-Action Spaces by Learning an Action Sampler From Off-Target Search Experience. |
AAAI |
2018 |
DBLP DOI BibTeX RDF |
|
| 13 | Kaiyin Zhou, Sheng Zhang, Xiangyu Meng, Qi Luo, Yuxing Wang, Ke Ding, Yukun Feng, Mo Chen, Kevin Cohen 0001, Jingbo Xia |
CRF-LSTM Text Mining Method Unveiling the Pharmacological Mechanism of Off-target Side Effect of Anti-Multiple Myeloma Drugs. |
BioNLP |
2018 |
DBLP DOI BibTeX RDF |
|
| 13 | Joseph D. Barry, Svetlana Shulga Morskaya, Tuyen Nguyen, Sarah Solomon, Kevin Fitzgerald, Stuart Milstein, Greg Hinkle |
RNA-Seq Dose Response Experiments for Quantification of Off-Target Effects with RNAi Therapeutics. |
BCB |
2018 |
DBLP DOI BibTeX RDF |
|
| 13 | Zhining Sa, Jingqi Zhou, Yangyun Zou, Zhixi Su, Xun Gu |
Paralog-divergent Features May Help Reduce Off-target Effects of Drugs: Hints from Glucagon Subfamily Analysis. |
Genom. Proteom. Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
| 13 | Inès Rasolohery, Gautier Moroy, Frédéric Guyon |
PatchSearch: A Fast Computational Method for Off-Target Detection. |
J. Chem. Inf. Model. |
2017 |
DBLP DOI BibTeX RDF |
|
| 13 | Beomjoon Kim, Leslie Pack Kaelbling, Tomás Lozano-Pérez |
Guiding the search in continuous state-action spaces by learning an action sampling distribution from off-target samples. |
CoRR |
2017 |
DBLP BibTeX RDF |
|
| 13 | Riwal Lefort, Ludovico Fusco, Olivier Pertz, François Fleuret |
Machine learning-based tools to model and to remove the off-target effect. |
Pattern Anal. Appl. |
2017 |
DBLP DOI BibTeX RDF |
|
| 13 | Xiaofei Zhang, Amir Kucharski, Wibe A. de Jong, Sally R. Ellingson |
Towards a better understanding of on and off target effects of the lymphocyte-specific kinase LCK for the development of novel and safer pharmaceuticals. |
ICCS |
2017 |
DBLP DOI BibTeX RDF |
|
| 13 | Hansaim Lim, Aleksandar Poleksic, Yuan Yao 0001, Hanghang Tong, Di He 0003, Luke Zhuang, Patrick Meng, Lei Xie 0006 |
Large-Scale Off-Target Identification Using Fast and Accurate Dual Regularized One-Class Collaborative Filtering and Its Application to Drug Repurposing. |
PLoS Comput. Biol. |
2016 |
DBLP DOI BibTeX RDF |
|
| 13 | Michael Zhou, Daisy Li, Xiaoli Huan, Joseph Manthey, Ekaterina Lioutikova, Hong Zhou |
Mathematical and computational analysis of CRISPR Cas9 sgRNA off-target homologies. |
BIBM |
2016 |
DBLP DOI BibTeX RDF |
|
| 13 | Björn-Oliver Gohlke, Tim Overkamp, Anja Richter, Antje Richter, Peter T. Daniel, Bernd Gillissen, Robert Preissner |
2D and 3D similarity landscape analysis identifies PARP as a novel off-target for the drug Vatalanib. |
BMC Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
| 13 | Robert P. Sheridan, Daniel R. McMasters, Johannes H. Voigt, Mary Jo Wildey |
eCounterscreening: Using QSAR Predictions to Prioritize Testing for Off-Target Activities and Setting the Balance between Benefit and Risk. |
J. Chem. Inf. Model. |
2015 |
DBLP DOI BibTeX RDF |
|
| 13 | Yuki Naito, Kimihiro Hino, Hidemasa Bono, Kumiko Ui-Tei |
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites. |
Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
| 13 | Bahar Yilmazel, Yanhui Hu, Frederic Sigoillot, Jennifer A. Smith, Caroline E. Shamu, Norbert Perrimon, Stephanie E. Mohr |
Online GESS: prediction of miRNA-like off-target effects in large-scale RNAi screen data by seed region analysis. |
BMC Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
| 13 | Lennart T. Anger, Antje Wolf, Klaus-Jürgen Schleifer, Dieter Schrenk, Sebastian G. Rohrer |
Generalized Workflow for Generating Highly Predictive in Silico Off-Target Activity Models. |
J. Chem. Inf. Model. |
2014 |
DBLP DOI BibTeX RDF |
|
| 13 | Robert P. Sheridan |
Global Quantitative Structure-Activity Relationship Models vs Selected Local Models as Predictors of Off-Target Activities for Project Compounds. |
J. Chem. Inf. Model. |
2014 |
DBLP DOI BibTeX RDF |
|
| 13 | H. Zhou, H. Wang |
A Database-Based Two-Phase Algorithm For Efficient and Complete Detection of siRNA Off-Target Homology. |
Informatica (Slovenia) |
2014 |
DBLP BibTeX RDF |
|
| 13 | An Xiao, Zhenchao Cheng, Lei Kong, Zuoyan Zhu, Shuo Lin, Ge Gao, Bo Zhang |
CasOT: a genome-wide Cas9/gRNA off-target searching tool. |
Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
| 13 | Evangelos Bellos 0002, Lachlan J. M. Coin |
cnvOffSeq: detecting intergenic copy number variation using off-target exome sequencing data. |
Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
| 13 | Sangsu Bae, Jeongbin Park, Jin-Soo Kim |
Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases. |
Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
| 13 | Emmanuel R. Yera, Ann E. Cleves, Ajay N. Jain |
Prediction of Off-Target Drug Effects Through Data Fusion. |
Pacific Symposium on Biocomputing |
2014 |
DBLP BibTeX RDF |
|
| 13 | Tony Ngo, Timothy J. Nicholas, Junli Chen, Angela M. Finch, Renate Griffith |
5-HT1A receptor pharmacophores to screen for off-target activity of α1-adrenoceptor antagonists. |
J. Comput. Aided Mol. Des. |
2013 |
DBLP DOI BibTeX RDF |
|
| 13 | Jan Grau, Jens Boch, Stefan Posch |
TALENoffer: genome-wide TALEN off-target prediction. |
Bioinform. |
2013 |
DBLP DOI BibTeX RDF |
|
| 13 | Karol Kozak, Sandra Kaestner, Thomas Wild, Andreas Vonderheit, Benjamin Misselwitz, Ulrike Kutay, Gabor Csucs |
New Algorithm for Analysis of Off-target Effects in siRNA Screens. |
BIOINFORMATICS |
2013 |
DBLP BibTeX RDF |
|
| 13 | Billur Engin |
A novel structural protein-protein interaction network model: Its applications on drug off-target prediction and genotype-phenotype linkage (Yeni bir yapısal protein-protein etkileşimi ağ modeli: Bu modelin ilaç uzak-hedeflerinin tahmininde ve genotip-fenotip bağlantısı kurmaktaki uygulamaları) |
|
2013 |
RDF |
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| 13 | ShengJun Fan, Qiang Geng, Zhen-Yu Pan, Xin Li, Lu Tie, Yan Pan, Xuejun Li |
Clarifying off-target effects for torcetrapib using network pharmacology and reverse docking approach. |
BMC Syst. Biol. |
2012 |
DBLP DOI BibTeX RDF |
|
| 13 | Thomas Evangelidis, Philip E. Bourne, Li Xie 0002, Lei Xie 0006 |
An integrated workflow for proteome-wide off-target identification and polypharmacology drug design. |
BIBM Workshops |
2012 |
DBLP DOI BibTeX RDF |
|
| 13 | Ankit Gupta, Xiangdong Meng, Lihua Julie Zhu, Nathan D. Lawson, Scot A. Wolfe |
Zinc finger protein-dependent and -independent contributions to the in vivo off-target activity of zinc finger nucleases. |
Nucleic Acids Res. |
2011 |
DBLP DOI BibTeX RDF |
|
| 13 | Xiaohua Douglas Zhang, Francesca Santini, Raul Lacson, Shane D. Marine, Qian Wu, Luca Benetti, Ruojing Yang, Alex McCampbell, Joel P. Berger, Dawn M. Toolan, Erica M. Stec, Daniel J. Holder, Keith A. Soper, Joseph F. Heyse, Marc Ferrer |
cSSMD: assessing collective activity for addressing off-target effects in genome-scale RNA interference screens. |
Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
| 13 | Michelle L. Wynn, Alejandra C. Ventura, Jacques-A. Sepulchre, Héctor J. García, Sofía D. Merajver |
Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity. |
BMC Syst. Biol. |
2011 |
DBLP DOI BibTeX RDF |
|
| 13 | Yunfeng Feng, Linghu Nie, Meghna Das Thakur, Qin Su, Zhenfen Chi, Yongliang Zhao, Gregory D. Longmore |
A Multifunctional Lentiviral-Based Gene Knockdown with Concurrent Rescue that Controls for Off-Target Effects of RNAi. |
Genom. Proteom. Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
|
| 13 | Roger L. Chang, Li Xie 0002, Lei Xie 0006, Philip E. Bourne, Bernhard Ø. Palsson |
Drug Off-Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model. |
PLoS Comput. Biol. |
2010 |
DBLP DOI BibTeX RDF |
|
| 13 | Yuki Naito, Jun Yoshimura, Shinichi Morishita, Kumiko Ui-Tei |
siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect. |
BMC Bioinform. |
2009 |
DBLP DOI BibTeX RDF |
|
| 13 | Josef Scheiber, Bin Chen, Mariusz Milik, Sai Chetan K. Sukuru, Andreas Bender 0002, Dmitri Mikhailov, Steven Whitebread, Jacques Hamon, Kamal Azzaoui, Laszlo Urban, Meir Glick, John W. Davies, Jeremy L. Jenkins |
Gaining Insight into Off-Target Mediated Effects of Drug Candidates with a Comprehensive Systems Chemical Biology Analysis. |
J. Chem. Inf. Model. |
2009 |
DBLP DOI BibTeX RDF |
|
| 13 | Shibin Qiu, Terran Lane |
RNA string kernels for RNAi off-target evaluation. |
Int. J. Bioinform. Res. Appl. |
2006 |
DBLP DOI BibTeX RDF |
|
| 13 | Hong Zhou, Yufang Wang, Xiao Zeng |
Fast and Complete Search of siRNA Off-target Sequences. |
BIOCOMP |
2006 |
DBLP BibTeX RDF |
|
| 13 | Yuki Naito, Tomoyuki Yamada, Takahiro Matsumiya, Kumiko Ui-Tei, Kaoru Saigo, Shinichi Morishita |
dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference. |
Nucleic Acids Res. |
2005 |
DBLP DOI BibTeX RDF |
|
| 13 | Tomoyuki Yamada, Shinichi Morishita |
Accelerated off-target search algorithm for siRNA. |
Bioinform. |
2005 |
DBLP DOI BibTeX RDF |
|
| 13 | Wenzhong Zhao, Terran Lane |
siRNA off-target search: a hybrid q-gram based filtering approach. |
BIOKDD |
2005 |
DBLP DOI BibTeX RDF |
|
| 8 | Shibin Qiu, Terran Lane |
The RNA String Kernel for siRNA Efficacy Prediction. |
BIBE |
2007 |
DBLP DOI BibTeX RDF |
|
| 8 | Mun-Ho Choi, In-Seon Jeong, Seung-Ho Kang, Hyeong-Seok Lim |
An Efficient Algorithm for Finding Gene-Specific Probes for DNA Microarrays. |
ISBRA |
2007 |
DBLP DOI BibTeX RDF |
|
| 8 | Simon Rowe, Andrew Blake 0001 |
Statistical Feature Modelling for Active Contours. |
ECCV (2) |
1996 |
DBLP DOI BibTeX RDF |
|
| 5 | Ashish Jain |
Model-Based Testing for Enterprise Software Solutions. |
COMPSAC (1) |
2005 |
DBLP DOI BibTeX RDF |
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