Search results for "PROSITE"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
186	Reece Hart, Ajay K. Royyuru, Gustavo Stolovitzky, Andrea Califano	Systematic and automated discovery of patterns in PROSITE families.	RECOMB	2000	DBLP DOI BibTeX RDF
72	Elena Zheleva, Abdullah N. Arslan	Fast Motif Search in Protein Sequence Databases.	CSR	2006	DBLP DOI BibTeX RDF	motif search, PROSITE pattern, heuristic, suffix tree, preprocessing, regular expression matching
72	Gonzalo Navarro 0001, Mathieu Raffinot	Fast and simple character classes and bounded gaps pattern matching, with application to protein searching.	RECOMB	2001	DBLP DOI BibTeX RDF	PROSITE, information retrieval, pattern matching, computational biology, bit-parallelism
49	Pedro Gabriel Ferreira, Paulo J. Azevedo	Evaluating Protein Motif Significance Measures: A Case Study on Prosite Patterns.	CIDM	2007	DBLP DOI BibTeX RDF
39	Bill C. H. Chang, Asanga Ratnaweera, Saman K. Halgamuge, Harry C. Watson	Particle Swarm Optimisation for Protein Motif Discovery.	Genet. Program. Evolvable Mach.	2004	DBLP DOI BibTeX RDF	protein sequence motif, symbolic data optimisation, motif discovery, particle swarm optimisation
30	Quangang Zheng, Haidong Lan, Weiguo Liu	XPFS: A new parallel PROSITE profile search algorithm on Xeon Phi.	BIBM	2014	DBLP DOI BibTeX RDF
30	Christian J. A. Sigrist, Edouard De Castro, Lorenzo Cerutti, Béatrice A. Cuche, Nicolas Hulo, Alan J. Bridge, Lydie Bougueleret, Ioannis Xenarios	New and continuing developments at PROSITE.	Nucleic Acids Res.	2013	DBLP DOI BibTeX RDF
30	Thierry Schüpbach, Marco Pagni, Alan J. Bridge, Lydie Bougueleret, Ioannis Xenarios, Lorenzo Cerutti	pfsearchV3: a code acceleration and heuristic to search PROSITE profiles.	Bioinform.	2013	DBLP DOI BibTeX RDF
30	Christian J. A. Sigrist, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Virginie Bulliard, Amos Bairoch, Nicolas Hulo	PROSITE, a protein domain database for functional characterization and annotation.	Nucleic Acids Res.	2010	DBLP DOI BibTeX RDF
30	Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Béatrice A. Cuche, Edouard De Castro, Corinne Lachaize, Petra S. Langendijk-Genevaux, Christian J. A. Sigrist	The 20 years of PROSITE.	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
30	Sungroh Yoon, Jessica C. Ebert, Eui-Young Chung, Giovanni De Micheli, Russ B. Altman	Clustering protein environments for function prediction: finding PROSITE motifs in 3D.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
30	Edouard De Castro, Christian J. A. Sigrist, Alexandre Gattiker, Virginie Bulliard, Petra S. Langendijk-Genevaux, Elisabeth Gasteiger, Amos Bairoch, Nicolas Hulo	ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins.	Nucleic Acids Res.	2006	DBLP DOI BibTeX RDF
30	Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Marco Pagni, Christian J. A. Sigrist	The PROSITE database.	Nucleic Acids Res.	2006	DBLP DOI BibTeX RDF
30	Christian J. A. Sigrist, Edouard De Castro, Petra S. Langendijk-Genevaux, Virginie Le Saux, Amos Bairoch, Nicolas Hulo	ProRule: a new database containing functional and structural information on PROSITE profiles.	Bioinform.	2005	DBLP DOI BibTeX RDF
30	Nicolas Hulo, Christian J. A. Sigrist, Virginie Le Saux, Petra S. Langendijk-Genevaux, Lorenza Bordoli, Alexandre Gattiker, Edouard De Castro, Philipp Bucher, Amos Bairoch	Recent improvements to the PROSITE database.	Nucleic Acids Res.	2004	DBLP DOI BibTeX RDF
30	Edward de Oliveira Ribeiro, Gustavo G. Zerlotini, Irving Lopes, Victor Ribeiro, Alba Cristina Magalhaes Alves de Melo, Maria Emília Telles Walter, Marcos Motta	Rede BIOFOCO: A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation.	WOB	2004	DBLP BibTeX RDF
30	Christian J. A. Sigrist, Lorenzo Cerutti, Nicolas Hulo, Alexandre Gattiker, Laurent Falquet, Marco Pagni, Amos Bairoch, Philipp Bucher	PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors.	Briefings Bioinform.	2002	DBLP DOI BibTeX RDF
30	Laurent Falquet, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J. A. Sigrist, Kay Hofmann, Amos Bairoch	The PROSITE database, its status in 2002.	Nucleic Acids Res.	2002	DBLP DOI BibTeX RDF
30	Jean-Paul Comet, Jacques Henry	Pairwise Sequence Alignment using a PROSITE Pattern-derived Similarity Score.	Comput. Chem.	2002	DBLP DOI BibTeX RDF
30	Xiangyun Wang, Diane Schroeder, Drena Dobbs, Vasant G. Honavar	Data-Driven Discovery of Protein Function Classifiers: Decision Trees Based on MEME Motifs outperform PROSITE Patterns and Profiles on Peptidase Families.	JCIS	2002	DBLP BibTeX RDF
30	Kim Laurio, Fredrik Linåker, Ajit Narayanan	Recognizing PROSITE Patterns with Cellular Automata.	JCIS	2002	DBLP BibTeX RDF
30	Kay Hofmann, Philipp Bucher, Laurent Falquet, Amos Bairoch	The PROSITE database, its status in 1999.	Nucleic Acids Res.	1999	DBLP DOI BibTeX RDF
30	Amos Bairoch, Philipp Bucher, Kay Hofmann	The PROSITE database, its status in 1997.	Nucleic Acids Res.	1997	DBLP DOI BibTeX RDF
30	Amos Bairoch, Philipp Bucher, Kay Hofmann	The PROSITE database, its status in 1995.	Nucleic Acids Res.	1996	DBLP DOI BibTeX RDF
30	Cathy H. Wu, Sheng Zhao, Hsi-Lien Chen	A Protein Class Database Organized with ProSite Protein Groups and PIR Superfamilies.	J. Comput. Biol.	1996	DBLP DOI BibTeX RDF
30	Amos Bairoch	The PROSITE dictionary of sites and patterns in proteins, its current status.	Nucleic Acids Res.	1993	DBLP DOI BibTeX RDF
30	Peter R. Sibbald, Hubert Sommerfeldt, P. Argos	Automated protein sequence pattern handling and PROSITE searching.	Comput. Appl. Biosci.	1991	DBLP DOI BibTeX RDF
20	Yanni Sun, Jeremy Buhler	Designing Patterns and Profiles for Faster HMM Search.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	bioinformatics databases, sequence similarity search, hidden Markov models, Biology and genetics
20	Tobias Marschall, Sven Rahmann	Probabilistic Arithmetic Automata and Their Application to Pattern Matching Statistics.	CPM	2008	DBLP DOI BibTeX RDF
20	Greg Paperin	Evolving sequence patterns for prediction of sub-cellular locations of eukaryotic proteins.	GECCO	2008	DBLP DOI BibTeX RDF	classifier learning, protein localisation, genetic algorithm
20	Pratibha Mehta Luthra, Sandeep Kumar Barodia, Amresh Prakash, Ramraghubir	cDNA-Derived Amino Acid Sequence from Rat Brain A2aR Possesses Conserved Motifs PMNYM of TM 5 Domain, Which May Be Involved in Dimerization of A2aR.	PRIB	2007	DBLP DOI BibTeX RDF	Adenosine A2a receptor, cDNA, GPCRs, RT-PCR, TM 5
20	Peera Liewlom, Thanawin Rakthanmanon, Kitsana Waiyamai	Prediction of Enzyme Class by Using Reactive Motifs Generated from Binding and Catalytic Sites.	ADMA	2007	DBLP DOI BibTeX RDF	mutation control, sequence motif, reactive motif, enzyme function prediction, catalytic site, amino acid substitution group, binding site
20	Bouchra Bouqata, Christopher D. Carothers, Boleslaw K. Szymanski, Mohammed Javeed Zaki	VOGUE: A Novel Variable Order-Gap State Machine for Modeling Sequences.	PKDD	2006	DBLP DOI BibTeX RDF
20	Luiz Henrique de Campos Merschmann, Alexandre Plastino 0001	A Bayesian approach for protein classification.	SAC	2006	DBLP DOI BibTeX RDF	data mining, bayesian classifier, protein classification
20	Yun Sheng Chung, Chin Lung Lu, Chuan Yi Tang	Efficient Algorithms for Regular Expression Constrained Sequence Alignment.	CPM	2006	DBLP DOI BibTeX RDF
20	Luiz Henrique de Campos Merschmann, Alexandre Plastino 0001	HiSP: A Probabilistic Data Mining Technique for Protein Classification.	International Conference on Computational Science (2)	2006	DBLP DOI BibTeX RDF
20	Yen Kaow Ng, Hirotaka Ono 0001, Takeshi Shinohara	Measuring Over-Generalization in the Minimal Multiple Generalizations of Biosequences.	Discovery Science	2005	DBLP DOI BibTeX RDF
20	Mehmet M. Dalkilic	An Architecture and Application for Integrating Curation Data at the Residue Level for Proteins.	DILS	2005	DBLP DOI BibTeX RDF
20	Rolv Seehuus, Amund Tveit, Ole Edsberg	Discovering biological motifs with genetic programming.	GECCO	2005	DBLP DOI BibTeX RDF	protein motifs, genetic programming, representations
20	Zhiping Wang, Mehmet M. Dalkilic, Sun Kim	Guiding motif discovery by iterative pattern refinement.	SAC	2004	DBLP DOI BibTeX RDF	framework, bioinformatics, pattern, Motif
20	Pierre Nicodème, Bruno Salvy, Philippe Flajolet	Motif Statistics.	ESA	1999	DBLP DOI BibTeX RDF
20	Erika Tateishi, Osamu Maruyama, Satoru Miyano	Extracting Best Consensus Motifs from Positive and Negative Examples.	STACS	1996	DBLP DOI BibTeX RDF	algorithms and computational complexity, genome informatics
20	Satoru Miyano	Algorithmic Problems Arising from Genome Informatics (Abstract).	ISAAC	1995	DBLP DOI BibTeX RDF